i5k initiative (ID 163993) - BioProject

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Accession: PRJNA163993 ID: 163993

i5k initiative (arthropods)

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This project is a component of the Earth BioGenome Project (EBP)

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40 additional projects are components of the Earth BioGenome Project (EBP).

The i5k initiative plans to sequence the genomes of 5,000 insect and related arthropod species. This project will be transformative because it aims to sequence the genomes of all insect species known to be important to worldwide agriculture, food safety, medicine, and energy production; all those used as models in biology; the most abundant in world ecosystems; and representatives in every branch of insect phylogeny so as to achieve a deep understanding of arthropod evolution and phylogeny.

Accession	PRJNA163993
Type	Umbrella project (Subtype:Funding initiative)
Organism	Arthropoda[Taxonomy ID: 6656] Eukaryota; Metazoa; Ecdysozoa; Arthropoda
Submission	Registration date: 9-May-2012 i5k consortium
Related Resources	i5k initiative

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1553645
WGS master	83
TSA master	12
Genomic DNA	56
Genomic RNA	3
Transcript	832557
SRA Experiments	1091
Protein Sequences	615225
Publications
PubMed	56
PMC	34
Other datasets
BioSample	769
Assembly	93

SRA Data Details

Parameter	Value
Data volume, Gbases	13,323
Data volume, Tbytes	8.01

i5k initiative encompasses the following 49 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Complete genome
Chromosomes
Scaffolds
Contigs
No data links
Total

2
7
31
3
1
44

BioProject accession	Assembly level	Name	Title
PRJNA256171	Contigs	Aethina tumida	Aethina tumida Genome sequencing and assembly (Small Hive Beetle Consortium)
PRJNA254820	Scaffolds	Amyelois transitella	Amyelois transitella strain:UIUC subculture of SPIRL-1966 Genome sequencing and assembly (University of Illinois at...)
PRJNA288990	Scaffolds	Bactrocera oleae	Bactrocera oleae isolate:Demokritus Genome sequencing and assembly (McGill University)
PRJNA312470	Complete genome	Bemisia tabaci and endosymbionts	Whitefly (Bemisia tabaci) MEAM1 genome sequencing (Cornell University)
PRJNA61101	Scaffolds	Bombus impatiens	Bombus impatiens genome sequencing project (Biotechnology Center, University...)

List all 44 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA256171	Contigs	Aethina tumida	Aethina tumida Genome sequencing and assembly (Small Hive Beetle Consortium)
PRJNA254820	Scaffolds	Amyelois transitella	Amyelois transitella strain:UIUC subculture of SPIRL-1966 Genome sequencing and assembly (University of Illinois at...)
PRJNA288990	Scaffolds	Bactrocera oleae	Bactrocera oleae isolate:Demokritus Genome sequencing and assembly (McGill University)
PRJNA312470	Complete genome	Bemisia tabaci and endosymbionts	Whitefly (Bemisia tabaci) MEAM1 genome sequencing (Cornell University)
PRJNA61101	Scaffolds	Bombus impatiens	Bombus impatiens genome sequencing project (Biotechnology Center, University...)
PRJNA291918	Chromosomes	Bradysia coprophila	Bradysia coprophila strain:Holo2 and endosymbiont Genome sequencing and assembly (Brown University)
PRJNA315816	Scaffolds	Calopteryx splendens	Calopteryx splendens genome sequencing (i5k initiative)
PRJNA416902	Scaffolds	Campodea augens	Campodea augens isolate:MM-2018 Genome sequencing and assembly (University of Geneva)
PRJNA168335	Scaffolds	Cephus cinctus	Wheatstem sawfly Cephus cinctus Genome Sequencing (University of Illinois at...)
PRJNA624215	Scaffolds	Chelonus insularis	Chelonus insularis isolate:UGA/USDA-ARS -01 Genome sequencing and assembly (University of Georgia, Athens)
PRJNA395945	Scaffolds	Clitarchus hookeri	Clitarchus hookeri Genome and transcriptome sequencing project (Landcare Research)
PRJNA565389	Scaffolds	Contarinia nasturtii	Contarinia nasturtii isolate:CC-2019 Genome sequencing and assembly (Agriculture Canada)
PRJNA284396	Scaffolds	Diachasma alloeum	Diachasma alloeum isolate:Michigan Genome sequencing and assembly (University of Illinois at...)
PRJNA29447	Complete genome	Diaphorina citri	Asian citrus psyllid genome sequencing project (International Psyllid Genome...)
PRJNA279825	Scaffolds	Dufourea novaeangliae	Dufourea novaeangliae isolate:0120121106 Genome sequencing and assembly (BGI)
PRJNA279814	Scaffolds	Eufriesea mexicana	Eufriesea mexicana isolate:0111107269 Genome sequencing and assembly (BGI)
PRJNA388474	Scaffolds	Euglossa dilemma	Euglossa dilemma isolate:1 Genome sequencing and assembly (University of California,...)
PRJNA258104	Scaffolds	Fopius arisanus	Fopius arisanus strain:USDA-PBARC FA_bdor Genome sequencing and assembly (USDA ARS)
PRJNA494147	Scaffolds	Galleria mellonella	Galleria mellonella isolate:Carbio01_MB Genome sequencing and assembly (University of Illinois at...)
PRJNA416901	No data links	Galloisiana yuasai	Galloisiana yuasai Genome sequencing and assembly (University of Geneva)
PRJNA279436	Scaffolds	Habropoda laboriosa	Habropoda laboriosa Genome sequencing and assembly (BGI)
PRJNA379496	Scaffolds	Heliothis virescens	Heliothis virescens Genome sequencing and assembly (University of Maryland College...)
PRJNA384703	Scaffolds	Holacanthella duospinosa	New Zealand giant collembola (Holacanthella duospinosa) genome and transcriptome sequencing project (Landcare Research)
PRJNA393384	Scaffolds	Laodelphax striatellus	Laodelphax striatellus isolate:Lst14 Genome sequencing and assembly (Institute of Zoology, Chinese...)
PRJNA835455	Chromosomes	Leguminivora glycinivorella	Leguminivora glycinivorella isolate:SPB_JAAS2020 RefSeq Genome sequencing and assembly (NCBI)
PRJNA602506	Contigs	Lucilia sericata	Lucilia sericata Genome Assembly and Differential Expression Analysis (North Carolina State University)
PRJNA380242	Scaffolds	Mamestra configurata	Mamestra configurata isolate:AAFC colony Genome sequencing and assembly (Agriculture and Agri-food...)
PRJNA658700	Chromosomes	Manduca sexta	De novo genome assembly of the Tobacco Hornworm moth (Manduca sexta) (Johns Hopkins University)
PRJNA45867	Scaffolds	Mayetiola destructor	Mayetiola destructor genome sequencing project (Baylor College of Medicine)
PRJNA369247	Scaffolds	Medauroidea extradentata	Medauroidea extradentata isolate:BJ-2015 Genome sequencing and assembly (University of California,...)
PRJNA66515	Scaffolds	Megachile rotundata	Megachile rotundata genome sequencing project (University of Maryland)
PRJNA279820	Scaffolds	Melipona quadrifasciata	Melipona quadrifasciata isolate:0111107301 Genome sequencing and assembly (BGI)
PRJNA195937	Scaffolds	Microplitis demolitor	Microplitis demolitor strain:Queensland-Clemson subculture Genome sequencing and assembly (University of Illinois at...)
PRJNA280451	Chromosomes	Neodiprion lecontei	Neodiprion lecontei Genome sequencing and assembly (University of Kentucky)
PRJNA284849	Scaffolds	Nicrophorus vespilloides	Nicrophorus vespilloides Genome sequencing and assembly (University of Georgia)
PRJNA517949	Scaffolds	Nylanderia fulva	Nylanderia fulva isolate:TAMU-Nful-2015 Genome sequencing and assembly (Global Ant Genomics Alliance)
PRJNA432980	Scaffolds	Odontomachus brunneus	Odontomachus brunneus whole genome sequencing (University of Illinois at...)
PRJNA553797	Contigs	Osmia lignaria	Osmia lignaria Genome sequencing and assembly (United States Department...)
PRJNA312025	Scaffolds	Rhipicephalus microplus	Rhipicephalus microplus and endosymbiont (Murdoch University)
PRJNA237968	Chromosomes	Tigriopus californicus	Tigriopus californicus strain:San Diego Genome sequencing and assembly (Scripps Institution of Oceanography)
PRJNA1009447	Chromosomes	Tigriopus californicus	Tigriopus californicus strain:San Diego RefSeq Genome sequencing (NCBI)
PRJNA668153	Scaffolds	Tribolium madens	Tribolium madens strain:KSU Genome sequencing and assembly (Kansas State University)
PRJNA736740	Chromosomes	Venturia canescens	Venturia canescens isolate:UGA Genome sequencing and assembly (USDA-ARS)
PRJNA259565	Scaffolds	Zeugodacus cucurbitae	Zeugodacus cucurbitae strain:USDA-PBARC White Pupae T1 Genome sequencing and assembly (USDA ARS)

Less...

Umbrella project

BioProject accession	Name	Title
PRJNA163991	Apidae	whole genome assembly of various bee species (Baylor College of Medicine...)
PRJNA163973	Arthropoda	i5k Arthropod Genome Pilot Project (i5k Consortium)
PRJNA772720	Genomic comparison of the sister species V. destructor and V. jacobsoni mite	Genomic comparison of the sister species V. destructor and V. jacobsoni mite (Ecology and Evolution Lab,...)
PRJNA165207	Tribolium	Whole genome assemblies of Tribolium species (The Tribolium genome consortium)
PRJNA922191	Zeugodacus cucurbitae	Genome sequencing of Zeugodacus cucurbitae (melon fly) adult male (United States Department...)

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