We report the first haplotype-resolved chromosome-scale genome assembly of Quercus alba and conducted comparative analyses of genome structure and gene content against other published Fagaceae genomes. In addition, we probed the genetic diversity of this widespread species and investigated its phylogenetic relationships with other oaks using whole genome data.
| Accession | PRJNA1061205 |
| Type | Umbrella project |
| Organism | Quercus alba[Taxonomy ID: 3513] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus; Quercus alba |
| Submission | Registration date: 4-Jan-2024
University of Tennessee, Knoxville |
| Relevance | Evolution |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 26 |
| WGS master | 2 |
| SRA Experiments | 36 |
| Other datasets |
| BioSample | 36 |
| Assembly | 2 |
This project encompasses the following 2 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes |
2
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1021599 | Chromosomes | A haplotype-resolved reference genome of Quercus alba sheds light on the evolutionary history of oaks | A haplotype-resolved reference genome of Quercus alba sheds light on the evolutionary history of oaks (University of Tennessee,...) | | PRJNA1049782 | Chromosomes | Quercus alba | Quercus alba Genome sequencing and assembly (University of Tennessee,...) |
|