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Accession: PRJNA996196 ID: 996196

Transcriptome analysis of cadmium and mercury tolerant rhizobia and the impacts of tolerance on symbiosis with legumes

We have measured cadmium (Cd) and mercury (Hg) tolerance in a collection of Sinorhizobium medicae (recently changed to Ensifer medicae) and Rhizobium leguminosarum from the Almaden mine region in Central Spain. We have assembled and annotated the genomes of 16 strains from this collection using PacBio sequencing. Transcriptomics analysis was conducted on Cd and Hg tolerant and susceptible E. medicae strains to identify genome wide and single gene responses to these metals. The strains Amp08 and SMp01 both have a mercury reductase operon, which is not commonly found in alpha-proteobacteria.
AccessionPRJNA996196
TypeUmbrella project
SubmissionRegistration date: 18-Jul-2023
DOE Joint Genome Institute
Related Resources
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments57
Other datasets
BioSample57
SRA Data Details
ParameterValue
Data volume, Gbases135
Data volume, Mbytes41376
This project encompasses the following 57 sub-projects:
Project TypeNumber of Projects
transcriptome57
BioProject
accession
OrganismTitle
PRJNA978825Rhizobium leguminosarumRhizobium leguminosarum VTc07 transcriptome - VTc07_Hg3 (DOE Joint Genome Institute)
PRJNA978824Rhizobium leguminosarumRhizobium leguminosarum VTc07 transcriptome - VTc07_Hg2 (DOE Joint Genome Institute)
PRJNA978823Rhizobium leguminosarumRhizobium leguminosarum VTc07 transcriptome - VTc07_Hg1 (DOE Joint Genome Institute)
PRJNA978822Rhizobium leguminosarumRhizobium leguminosarum VTc07 transcriptome - VTc07_Cd3 (DOE Joint Genome Institute)
PRJNA978821Rhizobium leguminosarumRhizobium leguminosarum VTc07 transcriptome - VTc07_Cd2 (DOE Joint Genome Institute)
List all 57 'transcriptome' projects...

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