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Accession: PRJNA330672 ID: 330672

sediment metagenome

Carbon and Sulfur Cycling in Prairie Pothole Wetland Sediments

This study aimed to provide the first information on coupled geochemistry and microbial communities in wetland sediments from the largest wetland ecosystem in the US, the Prairie Pothole Region (PPR). More...
AccessionPRJNA330672
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismsediment metagenome[Taxonomy ID: 749907]
unclassified sequences; metagenomes; ecological metagenomes; sediment metagenome
PublicationsDalcin Martins P et al., "Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems.", Microbiome, 2018 Aug 7;6(1):138
Grants
  • "Hydrology and Geochemistry of Prairie Pothole Lake Sedimentary Pore Waters: Implications for the Attenuation of Pesticides" (Grant ID EAR-1246594, National Science Foundation)
  • "Seasonal sulfur cycling as a control on methane flux in carbon-rich prairie pothole sediment ecosystems" (Grant ID 2025, Joint Genome Institute)
SubmissionRegistration date: 25-Nov-2018
The Ohio State University
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)72338
WGS master84
SRA Experiments219
Protein Sequences263895
Publications
PubMed1
PMC1
Other datasets
BioSample307
Assembly84
Assembly details:
Assembly levelNumber of Assemblies
84
84
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_003820405.1ContigRPQE00000000SAMN10417373
metabat2.166
GCA_003820335.1ContigRPON00000000SAMN10417330
bin.240
GCA_003820245.1ContigRPOY00000000SAMN10417341
maxbin2.0065
GCA_003820235.1ContigRPOZ00000000SAMN10417342
maxbin2.0082
GCA_003820265.1ContigRPOT00000000SAMN10417336
maxbin2.0013
GCA_003819755.1ContigRPQK00000000SAMN10417379
metabat2.299
GCA_003818475.1ContigRPRM00000000SAMN10417407
metabat2.851
GCA_003819745.1ContigRPQM00000000SAMN10417381
metabat2.324
GCA_003819835.1ContigRPQG00000000SAMN10417375
metabat2.191
GCA_003820435.1ContigRPQB00000000SAMN10417370
metabat2.143
GCA_003820585.1ContigRPOX00000000SAMN10417340
maxbin2.0055
GCA_003820255.1ContigRPOV00000000SAMN10417338
maxbin2.0024
GCA_003818205.1ContigRPRQ00000000SAMN10417411
metabat2.99
GCA_003819945.1ContigRPPV00000000SAMN10417364
maxbin2.1578
GCA_003819825.1ContigRPQI00000000SAMN10417377
metabat2.25
GCA_003820645.1ContigRPOR00000000SAMN10417334
concoct.173
GCA_003818515.1ContigRPRG00000000SAMN10417401
metabat2.76
GCA_003818495.1ContigRPRK00000000SAMN10417405
metabat2.802
GCA_003818595.1ContigRPQV00000000SAMN10417390
metabat2.451
GCA_003820495.1ContigRPPG00000000SAMN10417349
maxbin2.0329
GCA_003820615.1ContigRPOU00000000SAMN10417337
maxbin2.0022
GCA_003818485.1ContigRPRL00000000SAMN10417406
metabat2.850
GCA_003818605.1ContigRPQS00000000SAMN10417387
metabat2.380
GCA_003818195.1ContigRPRN00000000SAMN10417408
metabat2.854
GCA_003818555.1ContigRPRE00000000SAMN10417399
metabat2.725
GCA_003818635.1ContigRPPO00000000SAMN10417357
maxbin2.0642
GCA_003820595.1ContigRPOW00000000SAMN10417339
maxbin2.0031
GCA_003819735.1ContigRPQT00000000SAMN10417388
metabat2.402
GCA_003820065.1ContigRPPQ00000000SAMN10417359
maxbin2.1011
GCA_003820075.1ContigRPPP00000000SAMN10417358
maxbin2.0908
GCA_003819865.1ContigRPQF00000000SAMN10417374
metabat2.178
GCA_003820175.1ContigRPPI00000000SAMN10417351
maxbin2.0347
GCA_003818365.1ContigRPQW00000000SAMN10417391
metabat2.561
GCA_003820345.1ContigRPOM00000000SAMN10417329
bin.204
GCA_003820095.1ContigRPPM00000000SAMN10417355
maxbin2.0541
GCA_003819885.1ContigRPPY00000000SAMN10417367
maxbin2.1689
GCA_003818655.1ContigRPPL00000000SAMN10417354
maxbin2.0512
GCA_003820545.1ContigRPPC00000000SAMN10417345
maxbin2.0177
GCA_003818455.1ContigRPQP00000000SAMN10417384
metabat2.358
GCA_003856895.1ContigRPOL00000000SAMN10417328
bin.182
GCA_003856915.1ContigRPOQ00000000SAMN10417333
bin.737
GCA_003818345.1ContigRPQY00000000SAMN10417393
metabat2.665
GCA_003818505.1ContigRPRI00000000SAMN10417403
metabat2.783
GCA_003820165.1ContigRPPF00000000SAMN10417348
maxbin2.0325
GCA_003819975.1ContigRPPU00000000SAMN10417363
maxbin2.1429
GCA_003820505.1ContigRPPE00000000SAMN10417347
maxbin2.0272
GCA_003820185.1ContigRPPB00000000SAMN10417344
maxbin2.0126
GCA_003818175.1ContigRPRJ00000000SAMN10417404
metabat2.793
GCA_003857395.1ContigRPRC00000000SAMN10417397
metabat2.715
GCA_003857415.1ContigRPQA00000000SAMN10417369
metabat2.124
GCA_003820085.1ContigRPPN00000000SAMN10417356
maxbin2.0610
GCA_003819725.1ContigRPQQ00000000SAMN10417385
metabat2.370
GCA_003818375.1ContigRPQX00000000SAMN10417392
metabat2.590
GCA_003819955.1ContigRPPW00000000SAMN10417365
maxbin2.1615
GCA_003819985.1ContigRPPT00000000SAMN10417362
maxbin2.1403
GCA_003820005.1ContigRPPS00000000SAMN10417361
maxbin2.1368
GCA_003820375.1ContigRPQH00000000SAMN10417376
metabat2.211
GCA_003819715.1ContigRPQN00000000SAMN10417382
metabat2.334
GCA_003820475.1ContigRPPZ00000000SAMN10417368
maxbin2.1823
GCA_003819815.1ContigRPQJ00000000SAMN10417378
metabat2.256
GCA_003818235.1ContigRPRH00000000SAMN10417402
metabat2.764
GCA_003818425.1ContigRPQR00000000SAMN10417386
metabat2.373
GCA_003820275.1ContigRPOP00000000SAMN10417332
bin.732
GCA_003819845.1ContigRPQC00000000SAMN10417371
metabat2.147
GCA_003857025.1ContigRPOO00000000SAMN10417331
bin.308
GCA_003857425.1ContigRPQL00000000SAMN10417380
metabat2.308
GCA_003818285.1ContigRPRB00000000SAMN10417396
metabat2.71
GCA_003856905.1ContigRPPJ00000000SAMN10417352
maxbin2.0428
GCA_003820555.1ContigRPPA00000000SAMN10417343
maxbin2.0118
GCA_003820425.1ContigRPQD00000000SAMN10417372
metabat2.164
GCA_003818215.1ContigRPRD00000000SAMN10417398
metabat2.72
GCA_003818305.1ContigRPRA00000000SAMN10417395
metabat2.703
GCA_003820145.1ContigRPPK00000000SAMN10417353
maxbin2.0432
GCA_003820055.1ContigRPPR00000000SAMN10417360
maxbin2.1320
GCA_003819915.1ContigRPPX00000000SAMN10417366
maxbin2.1616
GCA_003817095.1ContigRPRO00000000SAMN10417409
metabat2.867
GCA_003818675.1ContigRPPD00000000SAMN10417346
maxbin2.0195
GCA_003820485.1ContigRPPH00000000SAMN10417350
maxbin2.0342
GCA_003818625.1ContigRPQO00000000SAMN10417383
metabat2.341
GCA_003820635.1ContigRPOS00000000SAMN10417335
concoct.366
GCA_003818395.1ContigRPQU00000000SAMN10417389
metabat2.423
GCA_003818335.1ContigRPQZ00000000SAMN10417394
metabat2.7
GCA_003818245.1ContigRPRF00000000SAMN10417400
metabat2.747
GCA_003818125.1ContigRPRP00000000SAMN10417410
metabat2.90
SRA Data Details
ParameterValue
Data volume, Gbases255
Data volume, Tbytes0.20

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