Escherichia coli (ID 596168) - BioProject

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Accession: PRJNA596168 ID: 596168

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli

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9338 additional projects are related by organism.

To describe the molecular epidemiology of antibiotic-resistant Escherichia coli isolated from an intensive pig production system in the uMgungundlovu District, South Africa, using WGS.

Accession	PRJNA596168
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 4-Nov-2020 University of KwaZulu-Natal (UKZN), South Africa
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	38
Other datasets
BioSample	43
Assembly	38

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

38
38

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_015230085.1	JAALJG000000000	SAMN14168429	CAC1-7	Escherichia coli
GCA_015230045.1	JAALJF000000000	SAMN14168430	CS4-7	Escherichia coli
GCA_015229895.1	JAAAGI000000000	SAMN13836684	A2-10-R4	Escherichia coli
GCA_015229905.1	JAAAGH000000000	SAMN13836683	A1-10-R8	Escherichia coli
GCA_015229875.1	JAAAGJ000000000	SAMN13836685	A2-10-R7	Escherichia coli
GCA_015229835.1	JAAAGL000000000	SAMN13836687	A2-5-R3	Escherichia coli
GCA_015229825.1	JAAAGK000000000	SAMN13836686	A2-4-R2	Escherichia coli
GCA_015229815.1	JAAAGM000000000	SAMN13836688	A3-10-R4	Escherichia coli
GCA_015229795.1	JAAAGO000000000	SAMN13836690	A5-5-R3	Escherichia coli
GCA_015229765.1	JAAAGN000000000	SAMN13836689	A5-1-1R4	Escherichia coli
GCA_015229535.1	JAAAHA000000000	SAMN13836703	CS4-4	Escherichia coli
GCA_015229545.1	JAAAGZ000000000	SAMN13836702	CR2-3	Escherichia coli
GCA_015229495.1	JAAAHB000000000	SAMN13836704	H1-1	Escherichia coli
GCA_015229485.1	JAAAHF000000000	SAMN13836709	TA2-7	Escherichia coli
GCA_015229475.1	JAAAHC000000000	SAMN13836705	H2-2-12	Escherichia coli
GCA_015229455.1	JAAAHD000000000	SAMN13836707	T3-9	Escherichia coli
GCA_015229425.1	JAAAHE000000000	SAMN13836708	TA2-6	Escherichia coli
GCA_015229415.1	JAAAHG000000000	SAMN13836710	TA3-1	Escherichia coli
GCA_015229395.1	JAAAHH000000000	SAMN13836711	TA3-6	Escherichia coli
GCA_015229355.1	JAAAHI000000000	SAMN13836712	TB3-10	Escherichia coli
GCA_015229335.1	JAAAHJ000000000	SAMN13836713	TB3-2	Escherichia coli
GCA_015229345.1	JAAAHK000000000	SAMN13836715	W1-7-R5	Escherichia coli
GCA_015229315.1	JAAAHL000000000	SAMN13836716	W2-4-R8	Escherichia coli
GCA_015229295.1	JAAAHO000000000	SAMN13836720	WB1-1-R2	Escherichia coli
GCA_015229275.1	JAAAHM000000000	SAMN13836717	W5R4	Escherichia coli
GCA_015229235.1	JAAAHN000000000	SAMN13836718	WA2-4-R1	Escherichia coli
GCA_015229225.1	JAAAHP000000000	SAMN13836721	WB3-1-R7	Escherichia coli
GCA_015229195.1	JAAAHQ000000000	SAMN13836722	WB1-1-R8	Escherichia coli
GCA_015229745.1	JAAAGP000000000	SAMN13836691	B1-1-R8	Escherichia coli
GCA_015229735.1	JAAAGR000000000	SAMN13836693	B3-1-8	Escherichia coli
GCA_015229715.1	JAAAGQ000000000	SAMN13836692	B2-2-R1	Escherichia coli
GCA_015229695.1	JAAAGS000000000	SAMN13836694	B3-7-R12	Escherichia coli
GCA_015229675.1	JAAAGT000000000	SAMN13836695	B4-6-R4	Escherichia coli
GCA_015229655.1	JAAAGV000000000	SAMN13836697	B5-3-R8	Escherichia coli
GCA_015229635.1	JAAAGX000000000	SAMN13836699	CAC1-8	Escherichia coli
GCA_015229595.1	JAAAGW000000000	SAMN13836698	B5-8-R8	Escherichia coli
GCA_015229605.1	JAAAGU000000000	SAMN13836696	B4-9-R5	Escherichia coli
GCA_015229575.1	JAAAGY000000000	SAMN13836701	CR1-2	Escherichia coli

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Escherichia coli Genome sequencing and assembly

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