biofilm metagenome (ID 615962) - BioProject

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Accession: PRJNA615962 ID: 615962

biofilm metagenome

Microbial dark matter driven degradation of carbon fiber polymer composites

This study aimed to identify the effects of microorganisms on the structure of polymer composites. More...

Accession	PRJNA615962
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	biofilm metagenome[Taxonomy ID: 718308] unclassified sequences; metagenomes; ecological metagenomes; biofilm metagenome
Submission	Registration date: 11-Jun-2020 Univerisity of Wisconsin--Madison
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	121
SRA Experiments	2
Other datasets
BioSample	123
Assembly	121

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

115
5
120

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_013335845.1	JAAXUU000000000	SAMN14482926	W4_Combined_metabat2_085	Actinomycetota bacterium
GCA_013335085.1	JAAXWE000000000	SAMN14482962	W9_Combined_metabat1_116	Alphaproteobacteria bacterium
GCA_013335185.1	JAAXWA000000000	SAMN14482958	W9_Combined_metabat1_111	Anaerolineaceae bacterium
GCA_013335895.1	JAAXUT000000000	SAMN14482925	W4_Combined_metabat2_079	Anaerolineaceae bacterium
GCA_013336335.1	JAAXTU000000000	SAMN14482900	W4_Combined_metabat1_115	Anaerolineaceae bacterium
GCA_013334685.1	JAAXXC000000000	SAMN14482986	W9_Combined_metabat2_061	Anaerolineaceae bacterium
GCA_013336325.1	JAAXTW000000000	SAMN14482902	W4_Combined_metabat1_120	Anaerolineales bacterium
GCA_013335305.1	JAAXVW000000000	SAMN14482954	W9_Combined_metabat1_098	Anaerolineales bacterium
GCA_013335365.1	JAAXVT000000000	SAMN14482951	W9_Combined_metabat1_086	Anaerolineales bacterium
GCA_013335535.1	JAAXVL000000000	SAMN14482943	W9_Combined_metabat1_055	Azonexaceae bacterium
GCA_013336455.1	JAAXTP000000000	SAMN14482895	W4_Combined_metabat1_092	Bacteroidales bacterium
GCA_013335885.1	JAAXUS000000000	SAMN14482924	W4_Combined_metabat2_070	Bacteroidales bacterium
GCA_013335275.1	JAAXVX000000000	SAMN14482955	W9_Combined_metabat1_100	Bacteroidales bacterium
GCA_013334735.1	JAAXXA000000000	SAMN14482984	W9_Combined_metabat2_052	Bacteroidota bacterium
GCA_013336475.1	JAAXTN000000000	SAMN14482893	W4_Combined_metabat1_075	Burkholderiaceae bacterium
GCA_013335045.1	JAAXWJ000000000	SAMN14482967	W9_Combined_metabat1_132	Caldisericota bacterium
GCA_013350285.1	JAAXWG000000000	SAMN14482964	W9_Combined_metabat1_119	Candidatus Altimarinota bacterium
GCA_013350265.1	JAAXTY000000000	SAMN14482904	W4_Combined_metabat1_125	Candidatus Altimarinota bacterium
GCA_013336435.1	JAAXTQ000000000	SAMN14482896	W4_Combined_metabat1_094	Candidatus Aminicenantes bacterium
GCA_013335065.1	JAAXWI000000000	SAMN14482966	W9_Combined_metabat1_131	Candidatus Aminicenantes bacterium
GCA_013335665.1	JAAXVE000000000	SAMN14482936	W4_Combined_metabat2_115	Candidatus Falkowbacteria bacterium
GCA_013336275.1	JAAXUA000000000	SAMN14482906	W4_Combined_metabat1_130	Candidatus Falkowbacteria bacterium
GCA_013335425.1	JAAXVQ000000000	SAMN14482948	W9_Combined_metabat1_077	Candidatus Firestonebacteria bacterium
GCA_013335735.1	JAAXVB000000000	SAMN14482933	W4_Combined_metabat2_105	Candidatus Moraniibacteriota bacterium
GCA_013336285.1	JAAXTX000000000	SAMN14482903	W4_Combined_metabat1_121	Candidatus Moraniibacteriota bacterium
GCA_013336235.1	JAAXTZ000000000	SAMN14482905	W4_Combined_metabat1_127	Candidatus Moraniibacteriota bacterium
GCA_013336225.1	JAAXUC000000000	SAMN14482908	W4_Combined_metabat1_134	Candidatus Moraniibacteriota bacterium
GCA_013336155.1	JAAXUE000000000	SAMN14482910	W4_Combined_metabat2_009	Candidatus Moraniibacteriota bacterium
GCA_013336545.1	JAAXTJ000000000	SAMN14482889	W4_Combined_metabat1_007	Candidatus Moraniibacteriota bacterium
GCA_013334765.1	JAAXWW000000000	SAMN14482980	W9_Combined_metabat2_046	Candidatus Moraniibacteriota bacterium
GCA_013334575.1	JAAXXG000000000	SAMN14482990	W9_Combined_metabat2_075	Candidatus Moraniibacteriota bacterium
GCA_013334245.1	JAAXXZ000000000	SAMN14483009	W9_Combined_metabat2_155	Candidatus Moraniibacteriota bacterium
GCA_013334235.1	JAAXXW000000000	SAMN14483006	W9_Combined_metabat2_136	Candidatus Moraniibacteriota bacterium
GCA_013335325.1	JAAXVU000000000	SAMN14482952	W9_Combined_metabat1_094	Candidatus Omnitrophota bacterium
GCA_013335175.1	JAAXWC000000000	SAMN14482960	W9_Combined_metabat1_114	Candidatus Roizmanbacteria bacterium
GCA_013334845.1	JAAXWV000000000	SAMN14482979	W9_Combined_metabat2_043	Candidatus Roizmanbacteria bacterium
GCA_013334475.1	JAAXXM000000000	SAMN14482996	W9_Combined_metabat2_110	Candidatus Saccharibacteria bacterium
GCA_013334425.1	JAAXXN000000000	SAMN14482997	W9_Combined_metabat2_114	Candidatus Saccharibacteria bacterium
GCA_013334825.1	JAAXWR000000000	SAMN14482975	W9_Combined_metabat2_032	Candidatus Yonathbacteria bacterium
GCA_013335575.1	JAAXVH000000000	SAMN14482939	W4_Combined_metabat2_135	Candidatus Yonathbacteria bacterium
GCA_013335985.1	JAAXUO000000000	SAMN14482920	W4_Combined_metabat2_051	Candidatus Yonathbacteria bacterium
GCA_013336055.1	JAAXUK000000000	SAMN14482916	W4_Combined_metabat2_034	Cellulomonadaceae bacterium
GCA_013336535.1	JAAXTK000000000	SAMN14482890	W4_Combined_metabat1_028	Chlorobaculum sp.
GCA_013334645.1	JAAXXE000000000	SAMN14482988	W9_Combined_metabat2_065	Chlorobaculum sp.
GCA_013334655.1	JAAXXD000000000	SAMN14482987	W9_Combined_metabat2_063	Chlorobaculum sp.
GCA_013334855.1	JAAXWU000000000	SAMN14482978	W9_Combined_metabat2_041	Chlorobaculum sp.
GCA_013334865.1	JAAXWS000000000	SAMN14482976	W9_Combined_metabat2_034	Chlorobiaceae bacterium
GCA_013334995.1	JAAXWN000000000	SAMN14482971	W9_Combined_metabat2_021	Chlorobiaceae bacterium
GCA_013334975.1	JAAXWL000000000	SAMN14482969	W9_Combined_metabat2_016	Chlorobiaceae bacterium
GCA_013334925.1	JAAXWP000000000	SAMN14482973	W9_Combined_metabat2_025	Chlorobiaceae bacterium
GCA_013334965.1	JAAXWO000000000	SAMN14482972	W9_Combined_metabat2_022	Chlorobiaceae bacterium
GCA_013334435.1	JAAXXP000000000	SAMN14482999	W9_Combined_metabat2_117	Chlorobiaceae bacterium
GCA_013334335.1	JAAXXR000000000	SAMN14483001	W9_Combined_metabat2_120	Chlorobiaceae bacterium
GCA_013334485.1	JAAXXL000000000	SAMN14482995	W9_Combined_metabat2_105	Chlorobiaceae bacterium
GCA_013334565.1	JAAXXI000000000	SAMN14482992	W9_Combined_metabat2_091	Chlorobiaceae bacterium
GCA_013334525.1	JAAXXK000000000	SAMN14482994	W9_Combined_metabat2_098	Chlorobiaceae bacterium
GCA_013334225.1	JAAXXY000000000	SAMN14483008	W9_Combined_metabat2_148	Chlorobiaceae bacterium
GCA_013336375.1	JAAXTS000000000	SAMN14482898	W4_Combined_metabat1_108	Chlorobiaceae bacterium
GCA_013335795.1	JAAXUZ000000000	SAMN14482931	W4_Combined_metabat2_102	Chlorobiaceae bacterium
GCA_013335785.1	JAAXUY000000000	SAMN14482930	W4_Combined_metabat2_098	Chlorobiaceae bacterium
GCA_013335825.1	JAAXUW000000000	SAMN14482928	W4_Combined_metabat2_095	Chlorobiaceae bacterium
GCA_013336025.1	JAAXUM000000000	SAMN14482918	W4_Combined_metabat2_036	Chlorobiaceae bacterium
GCA_013335525.1	JAAXVK000000000	SAMN14482942	W9_Combined_metabat1_033	Chlorobiaceae bacterium
GCA_013335725.1	JAAXVA000000000	SAMN14482932	W4_Combined_metabat2_104	Chlorobiaceae bacterium
GCA_013335675.1	JAAXVC000000000	SAMN14482934	W4_Combined_metabat2_109	Chlorobiaceae bacterium
GCA_013335115.1	JAAXWQ000000000	SAMN14482974	W9_Combined_metabat2_031	Chlorobiaceae bacterium
GCA_013335405.1	JAAXVR000000000	SAMN14482949	W9_Combined_metabat1_079	Chlorobiaceae bacterium
GCA_013335465.1	JAAXVM000000000	SAMN14482944	W9_Combined_metabat1_056	Chlorobiaceae bacterium
GCA_013334605.1	JAAXXH000000000	SAMN14482991	W9_Combined_metabat2_086	Chlorobiales bacterium
GCA_013334725.1	JAAXWZ000000000	SAMN14482983	W9_Combined_metabat2_051	Chlorobiales bacterium
GCA_013335335.1	JAAXVV000000000	SAMN14482953	W9_Combined_metabat1_095	Chlorobium limicola
GCA_013335765.1	JAAXUX000000000	SAMN14482929	W4_Combined_metabat2_097	Chlorobium limicola
GCA_013336035.1	JAAXUL000000000	SAMN14482917	W4_Combined_metabat2_035	Chloroflexales bacterium
GCA_013334875.1	JAAXWT000000000	SAMN14482977	W9_Combined_metabat2_037	Chloroflexota bacterium
GCA_013336425.1	JAAXTR000000000	SAMN14482897	W4_Combined_metabat1_105	Clostridiales bacterium
GCA_013336465.1	JAAXTO000000000	SAMN14482894	W4_Combined_metabat1_078	Clostridiales bacterium
GCA_013336165.1	JAAXUF000000000	SAMN14482911	W4_Combined_metabat2_014	Coriobacteriia bacterium
GCA_013334745.1	JAAXWY000000000	SAMN14482982	W9_Combined_metabat2_048	Coriobacteriia bacterium
GCA_013334945.1	JAAXWM000000000	SAMN14482970	W9_Combined_metabat2_020	Deltaproteobacteria bacterium
GCA_013335955.1	JAAXUQ000000000	SAMN14482922	W4_Combined_metabat2_064	Deltaproteobacteria bacterium
GCA_013335485.1	JAAXVO000000000	SAMN14482946	W9_Combined_metabat1_062	Deltaproteobacteria bacterium
GCA_013335925.1	JAAXUR000000000	SAMN14482923	W4_Combined_metabat2_067	Demequinaceae bacterium
GCA_013335565.1	JAAXVJ000000000	SAMN14482941	W9_Combined_metabat1_009	Desulfobulbaceae bacterium
GCA_013335025.1	JAAXWK000000000	SAMN14482968	W9_Combined_metabat2_014	Desulfobulbaceae bacterium
GCA_013335225.1	JAAXWB000000000	SAMN14482959	W9_Combined_metabat1_113	Desulfobulbaceae bacterium
GCA_013334445.1	JAAXXO000000000	SAMN14482998	W9_Combined_metabat2_115	Desulfobulbaceae bacterium
GCA_013334325.1	JAAXXT000000000	SAMN14483003	W9_Combined_metabat2_129	Erysipelotrichaceae bacterium
GCA_013336245.1	JAAXUB000000000	SAMN14482907	W4_Combined_metabat1_131	Erysipelotrichaceae bacterium
GCA_013335935.1	JAAXUP000000000	SAMN14482921	W4_Combined_metabat2_052	Eubacteriaceae bacterium
GCA_013336525.1	JAAXTM000000000	SAMN14482892	W4_Combined_metabat1_071	Geobacteraceae bacterium
GCA_013334255.1	JAAXXX000000000	SAMN14483007	W9_Combined_metabat2_139	Geobacteraceae bacterium
GCA_013334345.1	JAAXXU000000000	SAMN14483004	W9_Combined_metabat2_132	Geobacteraceae bacterium
GCA_013335635.1	JAAXVG000000000	SAMN14482938	W4_Combined_metabat2_134	Holophaga sp.
GCA_013334395.1	JAAXXS000000000	SAMN14483002	W9_Combined_metabat2_127	Holophagaceae bacterium
GCA_013336205.1	JAAXUD000000000	SAMN14482909	W4_Combined_metabat2_004	Lentimicrobium sp.
GCA_013336125.1	JAAXUG000000000	SAMN14482912	W4_Combined_metabat2_017	Methanoregulaceae archaeon
GCA_013335855.1	JAAXUV000000000	SAMN14482927	W4_Combined_metabat2_094	Methanoregulaceae archaeon
GCA_013335585.1	JAAXVI000000000	SAMN14482940	W9_Combined_metabat1_001	Methanothrix sp.
GCA_013335125.1	JAAXWH000000000	SAMN14482965	W9_Combined_metabat1_126	Methanothrix sp.
GCA_013335235.1	JAAXVZ000000000	SAMN14482957	W9_Combined_metabat1_108	Nanoarchaeota archaeon
GCA_013335375.1	JAAXVS000000000	SAMN14482950	W9_Combined_metabat1_085	Nitrospirales bacterium
GCA_013336065.1	JAAXUJ000000000	SAMN14482915	W4_Combined_metabat2_032	Nitrospirota bacterium
GCA_013334545.1	JAAXXJ000000000	SAMN14482993	W9_Combined_metabat2_096	Nitrospirota bacterium
GCA_013336095.1	JAAXUI000000000	SAMN14482914	W4_Combined_metabat2_030	Nostocales cyanobacterium W4_Combined_metabat2_030
GCA_013335625.1	JAAXVF000000000	SAMN14482937	W4_Combined_metabat2_130	Oscillochloris sp.
GCA_013334385.1	JAAXXQ000000000	SAMN14483000	W9_Combined_metabat2_119	Oscillochloris sp.
GCA_013336555.1	JAAXTL000000000	SAMN14482891	W4_Combined_metabat1_050	Oscillochloris sp.
GCA_013336365.1	JAAXTT000000000	SAMN14482899	W4_Combined_metabat1_111	Peptococcaceae bacterium
GCA_013336135.1	JAAXUH000000000	SAMN14482913	W4_Combined_metabat2_024	Syntrophaceae bacterium
GCA_013336345.1	JAAXTV000000000	SAMN14482901	W4_Combined_metabat1_119	Syntrophaceae bacterium
GCA_013335475.1	JAAXVN000000000	SAMN14482945	W9_Combined_metabat1_059	Syntrophaceae bacterium
GCA_013334265.1	JAAXXV000000000	SAMN14483005	W9_Combined_metabat2_134	Syntrophaceae bacterium
GCA_013334625.1	JAAXXF000000000	SAMN14482989	W9_Combined_metabat2_074	Syntrophobacteraceae bacterium
GCA_013335265.1	JAAXVY000000000	SAMN14482956	W9_Combined_metabat1_105	Syntrophobacteraceae bacterium
GCA_013335705.1	JAAXVD000000000	SAMN14482935	W4_Combined_metabat2_111	Syntrophobacteraceae bacterium
GCA_013335435.1	JAAXVP000000000	SAMN14482947	W9_Combined_metabat1_065	Thiobacillus sp.
GCA_013336005.1	JAAXUN000000000	SAMN14482919	W4_Combined_metabat2_049	Zoogloea sp.
GCA_013335165.1	JAAXWD000000000	SAMN14482961	W9_Combined_metabat1_115	bacterium
GCA_013334705.1	JAAXXB000000000	SAMN14482985	W9_Combined_metabat2_054	bacterium
GCA_013335095.1	JAAXWF000000000	SAMN14482963	W9_Combined_metabat1_117	candidate division WWE3 bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	86
Data volume, Mbytes	28652

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biofilm metagenome

Microbial dark matter driven degradation of carbon fiber polymer composites

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