human gut metagenome (ID 593787) - BioProject

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Accession: PRJNA593787 ID: 593787

human gut metagenome

Sulfoquinovose is a selective nutrient for bacteria in the human gut

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This project is a component of the Organosulfonate degradation in the human gut

Exploration of sulfoquinovose degradation by the human gut microbiota. Homogenized human feces from 8 vegetarians was used to construct microcosms, which were amended with sulfoquinovose and controls (e. More...

Accession	PRJNA593787
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human gut metagenome[Taxonomy ID: 408170] unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
Grants	"PHYSIOLOGICAL INTERACTIONS OF SALMONELLA AND THE INTESTINAL MICROBIOTA: ECOLOGICAL AND GENETIC FITNESS DETERMINANTS IN COLONIZATION RESISTANCE AND INFLAMMATION" (Grant ID I2320-B22, Austrian Science Fund)
Submission	Registration date: 4-May-2021 - University of Vienna - Division of Microbial Ecology, University of Vienna, Austria
Related Resources	Divison of Microbial Ecology
Relevance	Human gut microbiome

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	93
SRA Experiments	340
Other datasets
BioSample	166
Assembly	93

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

91
2
93

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_018264925.1	JABMAF000000000	SAMN14944954	SQ_MAG_56	Acholeplasmatales bacterium
GCA_018265935.1	JABLYI000000000	SAMN14944905	SQ_MAG_7	Acidaminococcaceae bacterium
GCA_018264395.1	JABMBF000000000	SAMN14944980	SQ_MAG_82	Acidaminococcaceae bacterium
GCA_018264315.1	JABMBL000000000	SAMN14944986	SQ_MAG_88	Acidaminococcaceae bacterium
GCA_018265195.1	JABLZQ000000000	SAMN14944939	SQ_MAG_41	Agathobacter sp.
GCA_018265175.1	JABLZS000000000	SAMN14944941	SQ_MAG_43	Akkermansia sp.
GCA_018265095.1	JABLZX000000000	SAMN14944946	SQ_MAG_48	Alistipes sp.
GCA_018265315.1	JABLZN000000000	SAMN14944936	SQ_MAG_38	Alistipes sp.
GCA_018265975.1	JABLYE000000000	SAMN14944901	SQ_MAG_3	Alistipes sp.
GCA_018265915.1	JABLYH000000000	SAMN14944904	SQ_MAG_6	Alistipes sp.
GCA_018265225.1	JABLZU000000000	SAMN14944943	SQ_MAG_45	Anaerostipes sp.
GCA_018264505.1	JABMBA000000000	SAMN14944975	SQ_MAG_77	Anaerotignum sp.
GCA_018264885.1	JABMAG000000000	SAMN14944955	SQ_MAG_57	Angelakisella sp.
GCA_018265555.1	JABLYY000000000	SAMN14944921	SQ_MAG_23	Bacilli bacterium
GCA_018264305.1	JABMBH000000000	SAMN14944982	SQ_MAG_84	Bacillota bacterium
GCA_018264735.1	JABMAP000000000	SAMN14944964	SQ_MAG_66	Bacteroides sp.
GCA_018264655.1	JABMAT000000000	SAMN14944968	SQ_MAG_70	Bacteroides sp.
GCA_018264635.1	JABMAU000000000	SAMN14944969	SQ_MAG_71	Bacteroides sp.
GCA_018265735.1	JABLYS000000000	SAMN14944915	SQ_MAG_17	Bacteroides sp.
GCA_018265275.1	JABLZO000000000	SAMN14944937	SQ_MAG_39	Bacteroides sp.
GCA_018265455.1	JABLZC000000000	SAMN14944925	SQ_MAG_27	Bacteroides sp.
GCA_018265885.1	JABLYJ000000000	SAMN14944906	SQ_MAG_8	Barnesiella sp.
GCA_018264855.1	JABMAK000000000	SAMN14944959	SQ_MAG_61	Bifidobacterium sp.
GCA_018264375.1	JABMBJ000000000	SAMN14944984	SQ_MAG_86	Blautia sp.
GCA_018264195.1	JABMBQ000000000	SAMN14944991	SQ_MAG_93	Christensenellaceae bacterium
GCA_018264325.1	JABMBI000000000	SAMN14944983	SQ_MAG_85	Christensenellaceae bacterium
GCA_018265985.1	JABLYF000000000	SAMN14944902	SQ_MAG_4	Christensenellaceae bacterium
GCA_018266015.1	JABLYD000000000	SAMN14944900	SQ_MAG_2	Christensenellaceae bacterium
GCA_018265595.1	JABLZA000000000	SAMN14944923	SQ_MAG_25	Christensenellaceae bacterium
GCA_018265495.1	JABLZB000000000	SAMN14944924	SQ_MAG_26	Christensenellaceae bacterium
GCA_018265715.1	JABLYR000000000	SAMN14944914	SQ_MAG_16	Clostridia bacterium
GCA_018265655.1	JABLYU000000000	SAMN14944917	SQ_MAG_19	Clostridia bacterium
GCA_018264835.1	JABMAJ000000000	SAMN14944958	SQ_MAG_60	Clostridia bacterium
GCA_018265255.1	JABLZP000000000	SAMN14944938	SQ_MAG_40	Clostridia bacterium
GCA_018264675.1	JABMAR000000000	SAMN14944966	SQ_MAG_68	Clostridia bacterium
GCA_018264425.1	JABMBD000000000	SAMN14944978	SQ_MAG_80	Clostridia bacterium
GCA_018264435.1	JABMBE000000000	SAMN14944979	SQ_MAG_81	Clostridiales bacterium
GCA_018264215.1	JABMBO000000000	SAMN14944989	SQ_MAG_91	Clostridium sp.
GCA_018264405.1	JABMBG000000000	SAMN14944981	SQ_MAG_83	Clostridium sp.
GCA_018265215.1	JABLZR000000000	SAMN14944940	SQ_MAG_42	Clostridium sp.
GCA_018265855.1	JABLYN000000000	SAMN14944910	SQ_MAG_12	Coprobacter sp.
GCA_018265765.1	JABLYP000000000	SAMN14944912	SQ_MAG_14	Desulfovibrionaceae bacterium
GCA_018264495.1	JABMAY000000000	SAMN14944973	SQ_MAG_75	Dialister sp.
GCA_018264295.1	JABMBK000000000	SAMN14944985	SQ_MAG_87	Dialister sp.
GCA_018264995.1	JABMAD000000000	SAMN14944952	SQ_MAG_54	Dorea sp.
GCA_018265695.1	JABLYT000000000	SAMN14944916	SQ_MAG_18	Duodenibacillus sp.
GCA_018264715.1	JABMAO000000000	SAMN14944963	SQ_MAG_65	Faecalibacterium sp.
GCA_018265635.1	JABLYW000000000	SAMN14944919	SQ_MAG_21	Flavonifractor sp.
GCA_018264475.1	JABMBC000000000	SAMN14944977	SQ_MAG_79	Lachnospira sp.
GCA_018264975.1	JABMAC000000000	SAMN14944951	SQ_MAG_53	Lachnospira sp.
GCA_018264915.1	JABMAH000000000	SAMN14944956	SQ_MAG_58	Lachnospira sp.
GCA_018264955.1	JABMAE000000000	SAMN14944953	SQ_MAG_55	Lachnospiraceae bacterium
GCA_018265875.1	JABLYL000000000	SAMN14944908	SQ_MAG_10	Lachnospiraceae bacterium
GCA_018264525.1	JABMAX000000000	SAMN14944972	SQ_MAG_74	Lachnospiraceae bacterium
GCA_018265615.1	JABLYX000000000	SAMN14944920	SQ_MAG_22	Lentisphaeria bacterium
GCA_018265375.1	JABLZJ000000000	SAMN14944932	SQ_MAG_34	Lentisphaeria bacterium
GCA_018264225.1	JABMBN000000000	SAMN14944988	SQ_MAG_90	Massiliimalia sp.
GCA_018265395.1	JABLZH000000000	SAMN14944930	SQ_MAG_32	Odoribacter sp.
GCA_018265795.1	JABLYO000000000	SAMN14944911	SQ_MAG_13	Odoribacter sp.
GCA_018264275.1	JABMBP000000000	SAMN14944990	SQ_MAG_92	Opitutales bacterium
GCA_018265155.1	JABLZT000000000	SAMN14944942	SQ_MAG_44	Oscillibacter sp.
GCA_018265115.1	JABLZW000000000	SAMN14944945	SQ_MAG_47	Oscillospiraceae bacterium
GCA_018265385.1	JABLZK000000000	SAMN14944933	SQ_MAG_35	Oscillospiraceae bacterium
GCA_018265295.1	JABLZL000000000	SAMN14944934	SQ_MAG_36	Oscillospiraceae bacterium
GCA_018265435.1	JABLZG000000000	SAMN14944929	SQ_MAG_31	Oscillospiraceae bacterium
GCA_018265355.1	JABLZI000000000	SAMN14944931	SQ_MAG_33	Oscillospiraceae bacterium
GCA_018265075.1	JABLZY000000000	SAMN14944947	SQ_MAG_49	Oscillospiraceae bacterium
GCA_018264795.1	JABMAN000000000	SAMN14944962	SQ_MAG_64	Oscillospiraceae bacterium
GCA_018264875.1	JABMAI000000000	SAMN14944957	SQ_MAG_59	Oscillospiraceae bacterium
GCA_018264775.1	JABMAM000000000	SAMN14944961	SQ_MAG_63	Oscillospiraceae bacterium
GCA_018265815.1	JABLYM000000000	SAMN14944909	SQ_MAG_11	Oscillospiraceae bacterium
GCA_018265675.1	JABLYV000000000	SAMN14944918	SQ_MAG_20	Oscillospiraceae bacterium
GCA_018265835.1	JABLYK000000000	SAMN14944907	SQ_MAG_9	Oscillospiraceae bacterium
GCA_018265575.1	JABLYZ000000000	SAMN14944922	SQ_MAG_24	Oscillospiraceae bacterium
GCA_018265525.1	JABLZE000000000	SAMN14944927	SQ_MAG_29	Oscillospiraceae bacterium
GCA_018264555.1	JABMAZ000000000	SAMN14944974	SQ_MAG_76	Oscillospiraceae bacterium
GCA_018264605.1	JABMAW000000000	SAMN14944971	SQ_MAG_73	Oscillospiraceae bacterium
GCA_018264575.1	JABMBB000000000	SAMN14944976	SQ_MAG_78	Parabacteroides sp.
GCA_018265325.1	JABLZM000000000	SAMN14944935	SQ_MAG_37	Parabacteroides sp.
GCA_018265515.1	JABLZF000000000	SAMN14944928	SQ_MAG_30	Parabacteroides sp.
GCA_018264685.1	JABMAQ000000000	SAMN14944965	SQ_MAG_67	Parasutterella sp.
GCA_018265015.1	JABMAB000000000	SAMN14944950	SQ_MAG_52	Prevotella sp.
GCA_018266035.1	JABLYC000000000	SAMN14944899	SQ_MAG_1	Rikenellaceae bacterium
GCA_018265055.1	JABLZZ000000000	SAMN14944948	SQ_MAG_50	Ruminiclostridium sp.
GCA_018265465.1	JABLZD000000000	SAMN14944926	SQ_MAG_28	Ruminiclostridium sp.
GCA_018265035.1	JABMAA000000000	SAMN14944949	SQ_MAG_51	Ruminococcus sp.
GCA_018264815.1	JABMAL000000000	SAMN14944960	SQ_MAG_62	Ruminococcus sp.
GCA_018265955.1	JABLYG000000000	SAMN14944903	SQ_MAG_5	Ruminococcus sp.
GCA_018264745.1	JABMAS000000000	SAMN14944967	SQ_MAG_69	Subdoligranulum sp.
GCA_018265135.1	JABLZV000000000	SAMN14944944	SQ_MAG_46	Subdoligranulum sp.
GCA_018265755.1	JABLYQ000000000	SAMN14944913	SQ_MAG_15	Sutterella sp.
GCA_018264595.1	JABMAV000000000	SAMN14944970	SQ_MAG_72	Sutterella sp.
GCA_018264235.1	JABMBM000000000	SAMN14944987	SQ_MAG_89	Thomasclavelia sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	78
Data volume, Mbytes	32230

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human gut metagenome

Sulfoquinovose is a selective nutrient for bacteria in the human gut

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