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Accession: PRJNA640378 ID: 640378

Metagenomes from Northern California groundwater

Metagenomes from eight shallow groundwater sites across Northern California. "Huge and variable diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems", by He et al.
AccessionPRJNA640378
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismgroundwater metagenome[Taxonomy ID: 717931]
unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
Publications
  • Published online: He C et al., "Huge and variable diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems", name, 2020;
SubmissionRegistration date: 21-Dec-2020
Innovative Genomics Institute
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2007
WGS master1988
Genomic DNA19
SRA Experiments53
Protein Sequences18231
Other datasets
BioSample2073
Assembly2007
Assembly details:
Assembly levelNumber of Assemblies
19
637
1350
2006
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
GCA_016213825.1ContigJACQZP000000000
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NC_groundwater_1810_Pr3_B-0.1um_69_14
GCA_016215215.1ScaffoldJACRKW000000000
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NC_groundwater_1865_Pr3_B-0.1um_64_10
GCA_016213785.1ContigJACQZQ000000000
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GCA_016213755.1ContigJACQZT000000000
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GCA_016235065.1ScaffoldJACRMB000000000
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GCA_016209585.1ContigJACQVU000000000
SAMN15436118
NC_groundwater_1471_Ag_S-0.65um_69_23
GCA_016209535.1ContigJACQVW000000000
SAMN15436120
NC_groundwater_1473_Ag_S-0.65um_71_22
GCA_016209495.1ContigJACQVX000000000
SAMN15436121
NC_groundwater_1474_Ag_S-0.65um_73_34
GCA_016209685.1ContigJACQVQ000000000
SAMN15436114
NC_groundwater_1467_Ag_S-0.65um_52_288
GCA_016209665.1ContigJACQVT000000000
SAMN15436117
NC_groundwater_1470_Ag_S-0.65um_67_16
GCA_016177925.1ScaffoldJACOUH000000000
SAMN15434384
NC_groundwater_65_Pr7_S-0.65um_66_14
GCA_016178505.1ContigJACOTG000000000
SAMN15434357
NC_groundwater_38_Pr7_B-0.1um_65_11
GCA_016178485.1ScaffoldJACOTF000000000
SAMN15434356
NC_groundwater_37_Pr7_B-0.1um_61_7
GCA_016179685.1ScaffoldJACPCR000000000
SAMN15434607
NC_groundwater_288_Ag_S-0.65um_63_14
GCA_016178855.1ContigJACOTE000000000
SAMN15434355
NC_groundwater_36_Pr7_B-0.1um_57_54
GCA_016188675.1ScaffoldJACPHJ000000000
SAMN15434907
NC_groundwater_411_Ag_B-0.1um_42_12
GCA_016187625.1ContigJACPJJ000000000
SAMN15434960
NC_groundwater_464_Ag_B-0.1um_38_350
GCA_016187595.1ScaffoldJACPJK000000000
SAMN15434961
NC_groundwater_465_Ag_B-0.1um_42_7
GCA_016187585.1ScaffoldJACPJL000000000
SAMN15434962
NC_groundwater_466_Ag_B-0.1um_43_26
GCA_016191165.1ScaffoldJACPPF000000000
SAMN15435116
NC_groundwater_620_Pr5_B-0.1um_61_30
GCA_016190155.1ContigJACPRB000000000
SAMN15435164
NC_groundwater_668_Ag_B-0.1um_65_30
GCA_016190175.1ContigJACPRC000000000
SAMN15435165
NC_groundwater_669_Ag_B-0.1um_68_34
GCA_016190145.1ContigJACPRD000000000
SAMN15435166
NC_groundwater_670_Ag_B-0.1um_68_49
GCA_016235865.1ContigJACRIK000000000
SAMN15436601
NC_groundwater_1801_Pr3_B-0.1um_50_33
GCA_016235875.1ContigJACRII000000000
SAMN15436599
NC_groundwater_1799_Pr3_B-0.1um_42_210
GCA_016235825.1ContigJACRIL000000000
SAMN15436602
NC_groundwater_1802_Pr3_B-0.1um_59_14
GCA_016235815.1ContigJACRIM000000000
SAMN15436603
NC_groundwater_1803_Pr3_B-0.1um_60_64
GCA_016235155.1ScaffoldJACRLW000000000
SAMN15436691
NC_groundwater_1891_Pr3_B-0.1um_70_9
GCA_016235145.1ScaffoldJACRLV000000000
SAMN15436690
NC_groundwater_1890_Pr3_B-0.1um_65_8
GCA_016220095.1ContigJACRIJ000000000
SAMN15436600
NC_groundwater_1800_Pr3_B-0.1um_47_15
GCA_016220085.1ContigJACRIN000000000
SAMN15436604
NC_groundwater_1804_Pr3_B-0.1um_70_16
GCA_016220045.1ContigJACRIP000000000
SAMN15436606
NC_groundwater_1806_Pr3_B-0.1um_71_12
GCA_016220035.1ContigJACRIO000000000
SAMN15436605
NC_groundwater_1805_Pr3_B-0.1um_71_11
GCA_016219565.1ScaffoldJACRLU000000000
SAMN15436689
NC_groundwater_1889_Pr3_B-0.1um_46_7
GCA_016222845.1ScaffoldJACRQD000000000
SAMN15436804
NC_groundwater_2004_Pr3_S-0.65um_41_2
GCA_016185115.1ContigJACPOF000000000
SAMN15435090
NC_groundwater_594_Pr5_B-0.1um_59_23
GCA_016192025.1ContigJACPUY000000000
SAMN15435409
NC_groundwater_770_Ag_S2p5_64_6
GCA_016185255.1ContigJACPNY000000000
SAMN15435083
NC_groundwater_587_Pr5_B-0.1um_44_23
GCA_016183985.1ContigJACPDN000000000
SAMN15434806
NC_groundwater_310_Ag_B-0.1um_62_28
GCA_016178915.1ScaffoldJACOSK000000000
SAMN15434335
NC_groundwater_16_Pr7_B-0.1um_66_19
GCA_016177455.1ContigJACOVE000000000
SAMN15434411
NC_groundwater_92_Ag_S2p5_36_30
GCA_016195095.1ContigJACQAE000000000
SAMN15435547
NC_groundwater_908_Pr1_S-0.2um_65_18
GCA_016195115.1ContigJACQAI000000000
SAMN15435551
NC_groundwater_912_Pr1_S-0.2um_69_16
GCA_016195085.1ContigJACQAG000000000
SAMN15435549
NC_groundwater_910_Pr1_S-0.2um_66_28
GCA_016195065.1ContigJACQAH000000000
SAMN15435550
NC_groundwater_911_Pr1_S-0.2um_68_35
GCA_016195185.1ScaffoldJACQAA000000000
SAMN15435543
NC_groundwater_904_Pr1_S-0.2um_52_13
GCA_016195245.1ContigJACQAC000000000
SAMN15435545
NC_groundwater_906_Pr1_S-0.2um_62_15
GCA_016195205.1ContigJACQAB000000000
SAMN15435544
NC_groundwater_905_Pr1_S-0.2um_57_15
GCA_016198545.1ContigJACQIJ000000000
SAMN15435763
NC_groundwater_1122_Ag_S-0.1um_56_24
GCA_016201015.1ScaffoldJACQDQ000000000
SAMN15435637
NC_groundwater_998_Pr1_S-0.65um_66_10
GCA_016202695.1ContigJACQOE000000000
SAMN15435914
NC_groundwater_1273_Ag_S-0.2um_71_98
GCA_016201105.1ContigJACQDN000000000
SAMN15435634
NC_groundwater_995_Pr1_S-0.65um_61_14
GCA_016199775.1ScaffoldJACQGA000000000
SAMN15435700
NC_groundwater_1061_Pr2_B-0.1um_60_12
GCA_016235765.1ContigJACRIZ000000000
SAMN15436616
NC_groundwater_1816_Pr3_B-0.1um_66_141
GCA_016235745.1ContigJACRJA000000000
SAMN15436617
NC_groundwater_1817_Pr3_B-0.1um_66_22
GCA_016235805.1ContigJACRIY000000000
SAMN15436615
NC_groundwater_1815_Pr3_B-0.1um_65_54
GCA_016235165.1ScaffoldJACRLX000000000
SAMN15436692
NC_groundwater_1892_Pr3_B-0.1um_64_18
GCA_016235025.1ContigJACRMV000000000
SAMN15436716
NC_groundwater_1916_Pr3_S2p5_61_40
GCA_016192435.1ContigJACPUD000000000
SAMN15435388
NC_groundwater_749_Ag_S-0.1um_64_25
GCA_016215645.1ContigJACRIX000000000
SAMN15436614
NC_groundwater_1814_Pr3_B-0.1um_64_115
GCA_016214175.1ScaffoldJACRPB000000000
SAMN15436776
NC_groundwater_1976_Pr3_S-0.2um_66_3
GCA_016214165.1ScaffoldJACROZ000000000
SAMN15436774
NC_groundwater_1974_Pr3_S-0.2um_65_4
GCA_016214145.1ContigJACRPA000000000
SAMN15436775
NC_groundwater_1975_Pr3_S-0.2um_66_25
GCA_016177805.1ScaffoldJACOUN000000000
SAMN15434392
NC_groundwater_73_Ag_B-0.1um_65_20
GCA_016183655.1ScaffoldJACPEH000000000
SAMN15434826
NC_groundwater_330_Ag_B-0.1um_67_97
GCA_016191945.1ContigJACPUZ000000000
SAMN15435410
NC_groundwater_771_Ag_S2p5_68_9
GCA_016208695.1ScaffoldJACQXO000000000
SAMN15436164
NC_groundwater_1517_Pr4_B-0.1um_60_2
GCA_016215605.1ContigJACRJB000000000
SAMN15436618
NC_groundwater_1818_Pr3_B-0.1um_66_35
GCA_016215555.1ContigJACRJC000000000
SAMN15436619
NC_groundwater_1819_Pr3_B-0.1um_61_64
GCA_016214125.1ContigJACRPC000000000
SAMN15436777
NC_groundwater_1977_Pr3_S-0.2um_65_12
GCA_016192305.1ContigJACPUK000000000
SAMN15435395
NC_groundwater_756_Ag_S-0.2um_66_9
GCA_016193605.1ScaffoldJACPRX000000000
SAMN15435329
NC_groundwater_690_Ag_S-0.2um_66_9
GCA_016195145.1ContigJACQAF000000000
SAMN15435548
NC_groundwater_909_Pr1_S-0.2um_66_15
GCA_016191685.1ScaffoldJACPVT000000000
SAMN15435431
NC_groundwater_792_Pr6_B-0.1um_66_11
GCA_016187325.1ScaffoldJACPJY000000000
SAMN15434976
NC_groundwater_480_Ag_S-0.1um_66_12
GCA_016185145.1ScaffoldJACPOB000000000
SAMN15435086
NC_groundwater_590_Pr5_B-0.1um_66_106
GCA_016176975.1ScaffoldJACOWD000000000
SAMN15434436
NC_groundwater_117_Ag_B-0.1um_66_10
GCA_016215525.1ContigJACRJD000000000
SAMN15436620
NC_groundwater_1820_Pr3_B-0.1um_71_25
GCA_016208385.1ScaffoldJACQYC000000000
SAMN15436178
NC_groundwater_1531_Pr4_S-0.65um_45_6
GCA_016196705.1ContigJACPXE000000000
SAMN15435468
NC_groundwater_829_Pr1_B-0.1um_55_5
GCA_016191565.1ScaffoldJACPWA000000000
SAMN15435438
NC_groundwater_799_Pr6_B-0.1um_41_7
GCA_016185345.1ScaffoldJACPNS000000000
SAMN15435077
NC_groundwater_581_Pr5_B-0.1um_63_15
GCA_016215085.1ScaffoldJACRMD000000000
SAMN15436698
NC_groundwater_1898_Pr3_S2p5_74_9
GCA_016235125.1ContigJACRLZ000000000
SAMN15436694
NC_groundwater_1894_Pr3_B-0.1um_41_15
GCA_016219985.1ContigJACRJO000000000
SAMN15436631
NC_groundwater_1831_Pr3_B-0.1um_49_18
GCA_016192105.1ContigJACPUV000000000
SAMN15435406
NC_groundwater_767_Ag_S2p5_48_9
GCA_016199885.1ScaffoldJACQFW000000000
SAMN15435696
NC_groundwater_1057_Pr2_B-0.1um_36_5
GCA_016200915.1ContigJACQDV000000000
SAMN15435643
NC_groundwater_1004_Pr1_S-0.65um_38_18
GCA_016185185.1ScaffoldJACPOD000000000
SAMN15435088
NC_groundwater_592_Pr5_B-0.1um_38_44
GCA_016178845.1ScaffoldJACOSN000000000
SAMN15434338
NC_groundwater_19_Pr7_B-0.1um_38_7
GCA_016195395.1ContigJACPZR000000000
SAMN15435533
NC_groundwater_894_Pr1_S2p5_57_11
GCA_016214035.1ContigJACRPF000000000
SAMN15436780
NC_groundwater_1980_Pr3_S-0.2um_53_5
GCA_016201265.1ContigJACQDD000000000
SAMN15435624
NC_groundwater_985_Pr1_S-0.65um_60_22
GCA_016185365.1ScaffoldJACPNP000000000
SAMN15435074
NC_groundwater_578_Pr5_B-0.1um_61_13
GCA_016235595.1ContigJACRJX000000000
SAMN15436640
NC_groundwater_1840_Pr3_B-0.1um_61_25
GCA_016235585.1ContigJACRJY000000000
SAMN15436641
NC_groundwater_1841_Pr3_B-0.1um_64_12
GCA_016235555.1ContigJACRKC000000000
SAMN15436645
NC_groundwater_1845_Pr3_B-0.1um_67_23
GCA_016235545.1ContigJACRKB000000000
SAMN15436644
NC_groundwater_1844_Pr3_B-0.1um_65_12
GCA_016219875.1ContigJACRJZ000000000
SAMN15436642
NC_groundwater_1842_Pr3_B-0.1um_64_53
GCA_016219905.1ContigJACRKA000000000
SAMN15436643
NC_groundwater_1843_Pr3_B-0.1um_65_12
GCA_016222805.1ScaffoldJACRQG000000000
SAMN15436807
NC_groundwater_2007_Pr3_S-0.65um_68_3
GCA_016222825.1ContigJACRQF000000000
SAMN15436806
NC_groundwater_2006_Pr3_S-0.65um_64_6
GCA_016190065.1ContigJACPRI000000000
SAMN15435171
NC_groundwater_675_Ag_B-0.1um_59_41
GCA_016190045.1ContigJACPRJ000000000
SAMN15435172
NC_groundwater_676_Ag_B-0.1um_64_32
GCA_016178445.1ScaffoldJACOTJ000000000
SAMN15434360
NC_groundwater_41_Pr7_B-0.1um_63_9
GCA_016199935.1ScaffoldJACQFS000000000
SAMN15435692
NC_groundwater_1053_Pr1_S-0.65um_64_11
GCA_016200005.1ContigJACQFP000000000
SAMN15435689
NC_groundwater_1050_Pr1_S-0.65um_58_16
GCA_016199985.1ContigJACQFQ000000000
SAMN15435690
NC_groundwater_1051_Pr1_S-0.65um_63_17
GCA_016199945.1ScaffoldJACQFR000000000
SAMN15435691
NC_groundwater_1052_Pr1_S-0.65um_63_8
GCA_016198745.1ContigJACQHZ000000000
SAMN15435753
NC_groundwater_1112_Ag_S2p5_58_80
GCA_016195385.1ContigJACPZS000000000
SAMN15435534
NC_groundwater_895_Pr1_S2p5_58_19
GCA_016209525.1ContigJACQWK000000000
SAMN15436134
NC_groundwater_1487_Ag_S-0.65um_59_29
GCA_016209255.1ContigJACQWL000000000
SAMN15436135
NC_groundwater_1488_Ag_S-0.65um_64_31
GCA_016432545.1ChromosomeSAMN15435638
NC_groundwater_999_Pr1_S-0.65um_60_83
GCA_016234865.1ScaffoldJACRNR000000000
SAMN15436740
NC_groundwater_1940_Pr3_S-0.2um_38_3
GCA_016234835.1ScaffoldJACRNS000000000
SAMN15436741
NC_groundwater_1941_Pr3_S-0.2um_44_2
GCA_016234825.1ScaffoldJACRNT000000000
SAMN15436742
NC_groundwater_1942_Pr3_S-0.2um_49_2
GCA_016191585.1ScaffoldJACPVU000000000
SAMN15435432
NC_groundwater_793_Pr6_B-0.1um_41_8
GCA_016213425.1ContigJACRAI000000000
SAMN15436236
NC_groundwater_1589_Pr3_B-0.1um_32_8
GCA_016202315.1ContigJACQPD000000000
SAMN15435939
NC_groundwater_1298_Ag_S-0.2um_51_18
GCA_016202645.1ContigJACQOF000000000
SAMN15435915
NC_groundwater_1274_Ag_S-0.2um_61_68
GCA_016200955.1ScaffoldJACQDU000000000
SAMN15435642
NC_groundwater_1003_Pr1_S-0.65um_70_8
GCA_016192885.1ScaffoldJACPTH000000000
SAMN15435366
NC_groundwater_727_Ag_S-0.65um_43_6
GCA_016189935.1ContigJACPRM000000000
SAMN15435175
NC_groundwater_679_Ag_B-0.1um_67_28
GCA_016235665.1ContigJACRJI000000000
SAMN15436625
NC_groundwater_1825_Pr3_B-0.1um_53_17
GCA_016208585.1ContigJACQXR000000000
SAMN15436167
NC_groundwater_1520_Pr4_B-0.1um_53_5
GCA_016204685.1ContigJACQKG000000000
SAMN15435812
NC_groundwater_1171_Ag_S-0.1um_46_18
GCA_016186685.1ContigJACPLE000000000
SAMN15435009
NC_groundwater_513_Ag_S-0.1um_47_10
GCA_016182565.1ContigJACPGI000000000
SAMN15434879
NC_groundwater_383_Ag_B-0.1um_36_13
SRA Data Details
ParameterValue
Data volume, Gbases1,774
Data volume, Tbytes0.63

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