mollusc metagenome (ID 679177) - BioProject

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Accession: PRJNA679177 ID: 679177

mollusc metagenome

Lucinid clam gills containing DNA of host and bacterial symbionts - Metagenomic assembly

We sampled lucinid clams, sequenced all the DNA in their gills, and assembled it to metagenomes to study their bacterial chemosymbionts at the genomic level.

Accession	PRJNA679177
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	mollusc metagenome[Taxonomy ID: 1417798] unclassified sequences; metagenomes; organismal metagenomes; mollusc metagenome
Publications	Osvatic JT et al., "Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups.", Proc Natl Acad Sci U S A, 2021 Jul 20;118(29)
Grants	"This project was funded, in part, by a grant from the Gordon and Betty Moore foundation to STRI and UC Davis (PIs: William Wcislo and Jonathan Eisen; http://doi.org/10.37807/GBMF5603)" (Grant ID http://doi.org/10.37807/GBMF5603, Gordon and Betty Moore Foundation)
Submission	Registration date: 9-Feb-2021 University of California, Davis
Related Resources	Project website #istmobiome
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	106
SRA Experiments	47
Publications
PubMed	1
PMC	1
Other datasets
BioSample	153
Assembly	106

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

106
106

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_016842625.1	JAEPCO000000000	SAMN16825256	MAGclacostrist064	Candidatus Thiodiazotropha endolucinida
GCA_016842515.1	JAEPCT000000000	SAMN16825260	MAGdivaljamaic004	Candidatus Thiodiazotropha endolucinida
GCA_016843295.1	JAEPBI000000000	SAMN16825223	MAG2PP4	Candidatus Thiodiazotropha endolucinida
GCA_016842965.1	JAEPBX000000000	SAMN16825238	MAGunknocarene035	Candidatus Thiodiazotropha endolucinida
GCA_026042565.1	JAPDVY000000000	SAMN30613281	CB111_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026042595.1	JAPDVW000000000	SAMN30613279	CB108_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026042555.1	JAPDVX000000000	SAMN30613280	CB110_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026042335.1	JAPDWC000000000	SAMN30613285	CBD038_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026042345.1	JAPDWE000000000	SAMN30613287	CBT43_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026042155.1	JAPDWG000000000	SAMN30613289	CC007_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026042195.1	JAPDWH000000000	SAMN30613290	CC008_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026041995.1	JAPDWI000000000	SAMN30613291	CC016_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026041825.1	JAPDWO000000000	SAMN30613297	IS025_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026041815.1	JAPDWN000000000	SAMN30613296	IS023_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026041775.1	JAPDWR000000000	SAMN30613300	PP005_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026041445.1	JAPDWW000000000	SAMN30613305	CSTRI064_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026041615.1	JAPDWT000000000	SAMN30613302	SSM61_Th1	Candidatus Thiodiazotropha endolucinida
GCA_026041535.1	JAPDWV000000000	SAMN30613304	CSTRI055_Th1	Candidatus Thiodiazotropha endolucinida
GCA_016848925.1	JAEPCY000000000	SAMN16825265	MAGL175	Candidatus Thiodiazotropha lotti
GCA_016842425.1	JAEPCZ000000000	SAMN16825266	MAGELBAC101	Candidatus Thiodiazotropha lotti
GCA_016842285.1	JAEPDH000000000	SAMN16825281	MAGLRAP3	Candidatus Thiodiazotropha lotti
GCA_016842265.1	JAEPDJ000000000	SAMN16825283	MAGL174	Candidatus Thiodiazotropha lotti
GCA_016842245.1	JAEPDL000000000	SAMN16825275	MAGKOTO2	Candidatus Thiodiazotropha lotti
GCA_016842225.1	JAEPDK000000000	SAMN16825274	MAGKOTO1	Candidatus Thiodiazotropha lotti
GCA_016842205.1	JAEPDN000000000	SAMN16825277	MAGLLP1	Candidatus Thiodiazotropha lotti
GCA_016842165.1	JAEPDM000000000	SAMN16825276	MAGKOTO3	Candidatus Thiodiazotropha lotti
GCA_016842175.1	JAEPDO000000000	SAMN16825278	MAGLPN	Candidatus Thiodiazotropha lotti
GCA_016842145.1	JAEPDP000000000	SAMN16825279	MAGLRAP1	Candidatus Thiodiazotropha lotti
GCA_016842125.1	JAEPDQ000000000	SAMN16825280	MAGLRAP2	Candidatus Thiodiazotropha lotti
GCA_016842325.1	JAEPDI000000000	SAMN16825282	MAGL173	Candidatus Thiodiazotropha lotti
GCA_026041435.1	JAPDXA000000000	SAMN30613309	KOTO2_Th1	Candidatus Thiodiazotropha lotti
GCA_026041415.1	JAPDWZ000000000	SAMN30613308	KOTO1_Th1	Candidatus Thiodiazotropha lotti
GCA_026041375.1	JAPDXB000000000	SAMN30613310	KOTO3_Th1	Candidatus Thiodiazotropha lotti
GCA_026041365.1	JAPDXD000000000	SAMN30613312	LPN_Th1	Candidatus Thiodiazotropha lotti
GCA_026041355.1	JAPDXG000000000	SAMN30613315	LRAP3_Th1	Candidatus Thiodiazotropha lotti
GCA_026041325.1	JAPDXC000000000	SAMN30613311	LLP1_Th1	Candidatus Thiodiazotropha lotti
GCA_026041295.1	JAPDXF000000000	SAMN30613314	LRAP2_Th1	Candidatus Thiodiazotropha lotti
GCA_026041315.1	JAPDXE000000000	SAMN30613313	LRAP1_Th1	Candidatus Thiodiazotropha lotti
GCA_016842065.1	JAEPDS000000000	SAMN16825285	MAGL046	Candidatus Thiodiazotropha sp. 'RUGA'
GCA_016842295.1	JAEPDF000000000	SAMN16825272	MAG3503E	Candidatus Thiodiazotropha taylori
GCA_016842345.1	JAEPDG000000000	SAMN16825273	MAGLLM	Candidatus Thiodiazotropha taylori
GCA_016842075.1	JAEPDR000000000	SAMN16825284	MAGL205	Candidatus Thiodiazotropha taylori
GCA_016842395.1	JAEPDD000000000	SAMN16825270	MAG3502B	Candidatus Thiodiazotropha taylori
GCA_016842505.1	JAEPCW000000000	SAMN16825263	MAGL192TRANS	Candidatus Thiodiazotropha taylori
GCA_016842485.1	JAEPCU000000000	SAMN16825261	MAGL003TRANS	Candidatus Thiodiazotropha taylori
GCA_016842465.1	JAEPCV000000000	SAMN16825262	MAGL191TRANS	Candidatus Thiodiazotropha taylori
GCA_016842605.1	JAEPCP000000000	SAMN16825257	MAGclacostrist055TRANS	Candidatus Thiodiazotropha taylori
GCA_016842585.1	JAEPCS000000000	SAMN16825259	MAGcteorfloridm17TRANS	Candidatus Thiodiazotropha taylori
GCA_016842565.1	JAEPCQ000000000	SAMN16825254	MAGclacostmartm61TRANS	Candidatus Thiodiazotropha taylori
GCA_016842545.1	JAEPCR000000000	SAMN16825255	MAGclacostrist055	Candidatus Thiodiazotropha taylori
GCA_016842945.1	JAEPBY000000000	SAMN16825243	MAGclacocristo008TRANS	Candidatus Thiodiazotropha taylori
GCA_016842925.1	JAEPBZ000000000	SAMN16825244	MAGclacocristo010TRANS	Candidatus Thiodiazotropha taylori
GCA_016842895.1	JAEPCA000000000	SAMN16825245	MAGclacocristo016TRANS	Candidatus Thiodiazotropha taylori
GCA_016842885.1	JAEPCB000000000	SAMN16825239	MAGclacocristo007	Candidatus Thiodiazotropha taylori
GCA_016842865.1	JAEPCC000000000	SAMN16825240	MAGclacocristo008	Candidatus Thiodiazotropha taylori
GCA_016842845.1	JAEPCD000000000	SAMN16825241	MAGclacocristo016	Candidatus Thiodiazotropha taylori
GCA_016842825.1	JAEPCE000000000	SAMN16825242	MAGclacocristo007TRANS	Candidatus Thiodiazotropha taylori
GCA_016842805.1	JAEPCF000000000	SAMN16825248	MAGclacosolart023TRANS	Candidatus Thiodiazotropha taylori
GCA_016842785.1	JAEPCG000000000	SAMN16825249	MAGclacosolart025TRANS	Candidatus Thiodiazotropha taylori
GCA_016842765.1	JAEPCH000000000	SAMN16825246	MAGclacosolart023	Candidatus Thiodiazotropha taylori
GCA_016842745.1	JAEPCI000000000	SAMN16825247	MAGclacosolart025	Candidatus Thiodiazotropha taylori
GCA_016842725.1	JAEPCJ000000000	SAMN16825250	MAGclacojamaic003TRANS	Candidatus Thiodiazotropha taylori
GCA_016842705.1	JAEPCK000000000	SAMN16825252	MAGclacopuebla005TRANS	Candidatus Thiodiazotropha taylori
GCA_016842685.1	JAEPCM000000000	SAMN16825258	MAGclacostrist064TRANS	Candidatus Thiodiazotropha taylori
GCA_016842655.1	JAEPCL000000000	SAMN16825251	MAGclacopuebla005	Candidatus Thiodiazotropha taylori
GCA_016842645.1	JAEPCN000000000	SAMN16825253	MAGclacostmartm61	Candidatus Thiodiazotropha taylori
GCA_016843285.1	JAEPDE000000000	SAMN16825271	MAG3503D	Candidatus Thiodiazotropha taylori
GCA_016843265.1	JAEPBJ000000000	SAMN16825224	MAGL082TRANS	Candidatus Thiodiazotropha taylori
GCA_016843245.1	JAEPBK000000000	SAMN16825225	MAGL201TRANS	Candidatus Thiodiazotropha taylori
GCA_016843225.1	JAEPBL000000000	SAMN16825229	MAGclacobastim108TRANS	Candidatus Thiodiazotropha taylori
GCA_016843205.1	JAEPBM000000000	SAMN16825230	MAGclacobastim110TRANS	Candidatus Thiodiazotropha taylori
GCA_016843185.1	JAEPBN000000000	SAMN16825231	MAGclacobastim111TRANS	Candidatus Thiodiazotropha taylori
GCA_016843165.1	JAEPBO000000000	SAMN16825226	MAGclacobastim108	Candidatus Thiodiazotropha taylori
GCA_016843125.1	JAEPBP000000000	SAMN16825227	MAGclacobastim110	Candidatus Thiodiazotropha taylori
GCA_016843135.1	JAEPCX000000000	SAMN16825264	MAGL193TRANS	Candidatus Thiodiazotropha taylori
GCA_016843105.1	JAEPBR000000000	SAMN16825233	MAGclacodrago038TRANS	Candidatus Thiodiazotropha taylori
GCA_016843075.1	JAEPBQ000000000	SAMN16825228	MAGclacobastim111	Candidatus Thiodiazotropha taylori
GCA_016843065.1	JAEPBS000000000	SAMN16825232	MAGclacodrago038	Candidatus Thiodiazotropha taylori
GCA_016843045.1	JAEPBT000000000	SAMN16825235	MAGclacobocaspmTRANS	Candidatus Thiodiazotropha taylori
GCA_016843025.1	JAEPBU000000000	SAMN16825234	MAGclacobocaspm43	Candidatus Thiodiazotropha taylori
GCA_016842995.1	JAEPBV000000000	SAMN16825236	MAGclacocahuit002TRANS	Candidatus Thiodiazotropha taylori
GCA_016842985.1	JAEPBW000000000	SAMN16825237	MAGunknocarene035TRANS	Candidatus Thiodiazotropha taylori
GCA_026041675.1	JAPDWS000000000	SAMN30613301	PP005_Th2	Candidatus Thiodiazotropha taylori
GCA_026041735.1	JAPDWQ000000000	SAMN30613299	IS025_Th2	Candidatus Thiodiazotropha taylori
GCA_026041835.1	JAPDWP000000000	SAMN30613298	IS023_Th2	Candidatus Thiodiazotropha taylori
GCA_026041475.1	JAPDWY000000000	SAMN30613307	CSTRI064_Th2	Candidatus Thiodiazotropha taylori
GCA_026041495.1	JAPDWX000000000	SAMN30613306	CSTRI055_Th2	Candidatus Thiodiazotropha taylori
GCA_026041625.1	JAPDWU000000000	SAMN30613303	SSM61_Th2	Candidatus Thiodiazotropha taylori
GCA_026042075.1	JAPDWK000000000	SAMN30613293	CC008_Th2	Candidatus Thiodiazotropha taylori
GCA_026042035.1	JAPDWJ000000000	SAMN30613292	CC007_Th2	Candidatus Thiodiazotropha taylori
GCA_026041915.1	JAPDWL000000000	SAMN30613294	CC010_Th2	Candidatus Thiodiazotropha taylori
GCA_026041985.1	JAPDWM000000000	SAMN30613295	CC016_Th2	Candidatus Thiodiazotropha taylori
GCA_026042315.1	JAPDWD000000000	SAMN30613286	CBD038_Th2	Candidatus Thiodiazotropha taylori
GCA_026042205.1	JAPDWF000000000	SAMN30613288	CBT43_Th2	Candidatus Thiodiazotropha taylori
GCA_026042475.1	JAPDVZ000000000	SAMN30613282	CB108_Th2	Candidatus Thiodiazotropha taylori
GCA_026042415.1	JAPDWA000000000	SAMN30613283	CB110_Th2	Candidatus Thiodiazotropha taylori
GCA_026042425.1	JAPDWB000000000	SAMN30613284	CB111_Th2	Candidatus Thiodiazotropha taylori
GCA_016842445.1	JAEPDA000000000	SAMN16825267	MAGELBAC102	Candidatus Thiodiazotropha weberae
GCA_016842385.1	JAEPDB000000000	SAMN16825268	MAGKSA1	Candidatus Thiodiazotropha weberae
GCA_016842365.1	JAEPDC000000000	SAMN16825269	MAGKSA2	Candidatus Thiodiazotropha weberae
GCA_026041245.1	JAPDXI000000000	SAMN30613317	L174_Th1	Candidatus Thiodiazotropha weberae
GCA_026041225.1	JAPDXH000000000	SAMN30613316	L173_Th1	Candidatus Thiodiazotropha weberae
GCA_021462595.1	JAJNAV000000000	SAMN23259180	SHEWLLM	Shewanella sp.
GCA_021462555.1	JAJNAT000000000	SAMN23259178	SHEW3503D	Shewanella sp.
GCA_021462545.1	JAJNAS000000000	SAMN23259177	SHEW3502B	Shewanella sp.
GCA_021462625.1	JAJNAU000000000	SAMN23259179	SHEW3503E	Shewanella sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	186
Data volume, Mbytes	77178

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mollusc metagenome

Lucinid clam gills containing DNA of host and bacterial symbionts - Metagenomic assembly

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