bacteria of animal origin (ID 844552) - BioProject

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Accession: PRJNA844552 ID: 844552

bacteria of animal origin

Detection of beta-lactamases in bacteria of animal origin

This study aimed to detect the presence of beta-lactam resistance and determine the genes involved in this process.

Accession	PRJNA844552
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"Prevalence of β-lactamases and vancomycin resistance genes in selected species of bacteria isolated on chicken farms in Moravia" (Grant ID JG_2019_005, Palacký University Olomouc)
Submission	Registration date: 2-Jun-2022 Palacky University Olomouc
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	148
Other datasets
BioSample	148
Assembly	148

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

1
147
148

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_025599455.1	JAOSGM000000000	SAMN29162684	S4400-11	Acinetobacter bohemicus
GCA_024129835.1	JAMXXD000000000	SAMN29162661	S1180-10	Acinetobacter indicus
GCA_024129815.1	JAMXXH000000000	SAMN29162665	S289-3	Acinetobacter indicus
GCA_024129795.1	JAMXXI000000000	SAMN29162666	S289-4	Acinetobacter indicus
GCA_024129755.1	JAMXXE000000000	SAMN29162662	S1180-3	Acinetobacter indicus
GCA_024129665.1	JAMXXG000000000	SAMN29162664	S249-3	Acinetobacter indicus
GCA_024129655.1	JAMXXF000000000	SAMN29162663	S1180-5	Acinetobacter indicus
GCA_024129635.1	JAMXXR000000000	SAMN29162675	VE243-2	Acinetobacter lwoffii
GCA_024129595.1	JAMXXS000000000	SAMN29162676	VE245-5	Acinetobacter lwoffii
GCA_024129555.1	JAMXXQ000000000	SAMN29162674	VE196-12	Acinetobacter lwoffii
GCA_024129435.1	JAMXXN000000000	SAMN29162671	S332-3	Acinetobacter lwoffii
GCA_024129355.1	JAMXXP000000000	SAMN29162673	VE196-10	Acinetobacter lwoffii
GCA_024129735.1	JAMXXK000000000	SAMN29162668	S246-3	Acinetobacter lwoffii
GCA_024129715.1	JAMXXM000000000	SAMN29162670	S298-4	Acinetobacter lwoffii
GCA_024129685.1	JAMXXL000000000	SAMN29162669	S252-2	Acinetobacter lwoffii
GCA_024129855.1	JAMXXC000000000	SAMN29162660	S1047-1	Acinetobacter lwoffii
GCA_024129115.1	JAMXXO000000000	SAMN29162672	VE192-9	Acinetobacter lwoffii
GCA_024129765.1	JAMXXJ000000000	SAMN29162667	S332-2	Acinetobacter pseudolwoffii
GCA_024129565.1	JAMXXT000000000	SAMN29162677	S298-3	Acinetobacter schindleri
GCA_024129285.1	JAMXXZ000000000	SAMN29162683	S4397-1	Acinetobacter sp. S4397-1
GCA_024129495.1	JAMXYB000000000	SAMN29162686	S4400-12	Acinetobacter sp. S4400-12
GCA_024129535.1	JAMXXV000000000	SAMN29162679	S1126-8	Acinetobacter towneri
GCA_024129605.1	JAMXXU000000000	SAMN29162678	S1126-4	Acinetobacter towneri
GCA_024129215.1	JAMXXX000000000	SAMN29162681	S211-1	Acinetobacter towneri
GCA_024129385.1	JAMXXW000000000	SAMN29162680	S212-2	Acinetobacter towneri
GCA_024129075.1	JAMXXY000000000	SAMN29162682	S212-3	Acinetobacter towneri
GCA_024129475.1	JAMXYC000000000	SAMN29162687	S1180-9	Brevundimonas diminuta
GCA_024129445.1	JAMXYD000000000	SAMN29162688	S4446-7	Brevundimonas diminuta
GCA_024129415.1	JAMXYE000000000	SAMN29162689	S4446-13	Brevundimonas diminuta
GCA_024126535.1	JAMYAN000000000	SAMN29162750	J112-3	Brucella intermedia
GCA_024127925.1	JAMYAO000000000	SAMN29162751	J111-5	Brucella intermedia
GCA_024129125.1	JAMXYF000000000	SAMN29162690	S1039-1	Citrobacter freundii
GCA_024129235.1	JAMXYG000000000	SAMN29162691	S1039-4	Citrobacter freundii
GCA_024129015.1	JAMXYH000000000	SAMN29162692	S1039-6	Citrobacter freundii
GCA_024129165.1	JAMXYJ000000000	SAMN29162694	S331-3	Enterobacter hormaechei
GCA_024129315.1	JAMXYM000000000	SAMN29162697	S4446-23	Enterobacter hormaechei
GCA_024129275.1	JAMXYI000000000	SAMN29162693	S331-2	Enterobacter hormaechei
GCA_024129345.1	JAMXYK000000000	SAMN29162695	S1039-3	Enterobacter hormaechei
GCA_024129335.1	JAMXYL000000000	SAMN29162696	S1039-5	Enterobacter hormaechei
GCA_024126425.1	JAMYAH000000000	SAMN29162744	S4443-9	Escherichia coli
GCA_024126475.1	JAMYAF000000000	SAMN29162742	S4443-16	Escherichia coli
GCA_024126515.1	JAMYAG000000000	SAMN29162743	S4443-19	Escherichia coli
GCA_024127795.1	JAMYAJ000000000	SAMN29162746	S4443-20	Escherichia coli
GCA_024127805.1	JAMYAB000000000	SAMN29162738	S1126-1	Escherichia coli
GCA_024127755.1	JAMYAK000000000	SAMN29162747	S4443-21	Escherichia coli
GCA_024127735.1	JAMYAI000000000	SAMN29162745	S4443-17	Escherichia coli
GCA_024127705.1	JAMYAE000000000	SAMN29162741	S4443-15	Escherichia coli
GCA_024127695.1	JAMYAD000000000	SAMN29162740	S4443-2	Escherichia coli
GCA_024127655.1	JAMXZW000000000	SAMN29162733	CAM213-1	Escherichia coli
GCA_024127555.1	JAMXZV000000000	SAMN29162732	S1039-2	Escherichia coli
GCA_024127365.1	JAMXYZ000000000	SAMN29162710	S306-3	Escherichia coli
GCA_024127285.1	JAMXYT000000000	SAMN29162704	S283-1	Escherichia coli
GCA_024127305.1	JAMXZF000000000	SAMN29162716	S374-2	Escherichia coli
GCA_024126835.1	JAMXZN000000000	SAMN29162724	S289-2	Escherichia coli
GCA_024127255.1	JAMXZG000000000	SAMN29162717	S374-3	Escherichia coli
GCA_024127125.1	JAMXZR000000000	SAMN29162728	S349-3	Escherichia coli
GCA_024127075.1	JAMXZD000000000	SAMN29162714	VE267-5	Escherichia coli
GCA_024127085.1	JAMXZI000000000	SAMN29162719	S264-3	Escherichia coli
GCA_024127065.1	JAMXZQ000000000	SAMN29162727	S349-2	Escherichia coli
GCA_024127055.1	JAMXZA000000000	SAMN29162711	VA158-10	Escherichia coli
GCA_024127235.1	JAMXZH000000000	SAMN29162718	S264-4	Escherichia coli
GCA_024127215.1	JAMXZJ000000000	SAMN29162720	VA158-1	Escherichia coli
GCA_024127175.1	JAMXZB000000000	SAMN29162712	VE266-3	Escherichia coli
GCA_024127165.1	JAMXZP000000000	SAMN29162726	S349-1	Escherichia coli
GCA_024127155.1	JAMXZO000000000	SAMN29162725	S298-1	Escherichia coli
GCA_024126915.1	JAMXZX000000000	SAMN29162734	CAM213-2	Escherichia coli
GCA_024126905.1	JAMXZZ000000000	SAMN29162736	S1185-2	Escherichia coli
GCA_024126895.1	JAMYAA000000000	SAMN29162737	S1185-1	Escherichia coli
GCA_024126865.1	JAMXZC000000000	SAMN29162713	VE267-1	Escherichia coli
GCA_024126855.1	JAMYAC000000000	SAMN29162739	S1126-7	Escherichia coli
GCA_024127035.1	JAMXZK000000000	SAMN29162721	S374-1A	Escherichia coli
GCA_024127015.1	JAMXZL000000000	SAMN29162722	S374-1B	Escherichia coli
GCA_024126985.1	JAMXZM000000000	SAMN29162723	S289-1	Escherichia coli
GCA_024126975.1	JAMXZS000000000	SAMN29162729	S349-5	Escherichia coli
GCA_024126955.1	JAMXZY000000000	SAMN29162735	S1045-2	Escherichia coli
GCA_024127995.1	JAMXYY000000000	SAMN29162709	S306-2	Escherichia coli
GCA_024128055.1	JAMXYW000000000	SAMN29162707	CAM49-1	Escherichia coli
GCA_024128025.1	JAMXYX000000000	SAMN29162708	S306-1	Escherichia coli
GCA_024128015.1	JAMXYV000000000	SAMN29162706	S285-1	Escherichia coli
GCA_024129245.1	JAMXYN000000000	SAMN29162698	S288-1	Escherichia coli
GCA_024129195.1	JAMXYO000000000	SAMN29162699	CAM44-1	Escherichia coli
GCA_024129155.1	JAMXYU000000000	SAMN29162705	S285-2	Escherichia coli
GCA_024129005.1	JAMXYQ000000000	SAMN29162701	CAM47-2	Escherichia coli
GCA_024129055.1	JAMXYR000000000	SAMN29162702	CAM47-1	Escherichia coli
GCA_024129095.1	JAMXYP000000000	SAMN29162700	CAM47-3	Escherichia fergusonii
GCA_024127315.1	JAMXZE000000000	SAMN29162715	S375	Escherichia fergusonii
GCA_024127275.1	JAMXYS000000000	SAMN29162703	CAM44-2	Escherichia fergusonii
GCA_024127495.1	JAMXZU000000000	SAMN29162731	S298-5	Escherichia fergusonii
GCA_024127765.1	JAMXZT000000000	SAMN29162730	S298-2	Escherichia fergusonii
GCA_024126395.1	JAMYAL000000000	SAMN29162748	S1180-7	Klebsiella pneumoniae
GCA_024127425.1	JAMYBQ000000000	SAMN29162781	VA161-2	Metapseudomonas otitidis
GCA_024127675.1	JAMYAM000000000	SAMN29162749	S333-2	Myroides odoratimimus
GCA_024129515.1	JAMXYA000000000	SAMN29162685	S333-3	Proteus penneri
GCA_024128095.1	JAMYBB000000000	SAMN29162764	S210-5	Pseudomonas aeruginosa
GCA_024127935.1	JAMYAZ000000000	SAMN29162762	S209-7	Pseudomonas aeruginosa
GCA_024128325.1	JAMYBA000000000	SAMN29162763	S210-4	Pseudomonas aeruginosa
GCA_024127635.1	JAMYAS000000000	SAMN29162755	J111-2	Pseudomonas aeruginosa
GCA_024127595.1	JAMYAU000000000	SAMN29162757	VE267-2	Pseudomonas aeruginosa
GCA_024127605.1	JAMYAT000000000	SAMN29162756	J111-4	Pseudomonas aeruginosa
GCA_024127845.1	JAMYAP000000000	SAMN29162752	J112-2	Pseudomonas aeruginosa
GCA_024127835.1	JAMYAY000000000	SAMN29162761	S209-6	Pseudomonas aeruginosa
GCA_024127525.1	JAMYAW000000000	SAMN29162759	S265-1	Pseudomonas aeruginosa
GCA_024127515.1	JAMYAR000000000	SAMN29162754	J111-1	Pseudomonas aeruginosa
GCA_024127575.1	JAMYAV000000000	SAMN29162758	S212-1	Pseudomonas aeruginosa
GCA_024126655.1	JAMYAQ000000000	SAMN29162753	J112-1	Pseudomonas aeruginosa
GCA_024126375.1	JAMYBD000000000	SAMN29162766	S305	Pseudomonas aeruginosa
GCA_024126385.1	JAMYBC000000000	SAMN29162765	S297-2	Pseudomonas aeruginosa
GCA_024126485.1	JAMYAX000000000	SAMN29162760	S267-7	Pseudomonas aeruginosa
GCA_024126575.1	JAMYBX000000000	SAMN29162788	VA157-1	Pseudomonas asiatica
GCA_024126565.1	JAMYBW000000000	SAMN29162787	VA157-2	Pseudomonas asiatica
GCA_024128065.1	JAMYBU000000000	SAMN29162785	VA161-1	Pseudomonas asiatica
GCA_024128215.1	JAMYCA000000000	SAMN29162791	S4397-2	Pseudomonas asiatica
GCA_025599415.1	JAOSGK000000000	SAMN29162767	S4446-2	Pseudomonas brassicacearum
GCA_024126615.1	JAMYBP000000000	SAMN29162780	S265-5	Pseudomonas chlororaphis
GCA_024127915.1	JAMYBL000000000	SAMN29162776	VA158-3	Pseudomonas chlororaphis
GCA_024127875.1	JAMYBM000000000	SAMN29162777	VE267-6B	Pseudomonas chlororaphis
GCA_024128195.1	JAMYBO000000000	SAMN29162779	S265-4	Pseudomonas chlororaphis
GCA_024128135.1	JAMYBN000000000	SAMN29162778	S265-2	Pseudomonas chlororaphis
GCA_024126455.1	JAMYBE000000000	SAMN29162768	VE193-7	Pseudomonas fluorescens
GCA_024127895.1	JAMYBK000000000	SAMN29162775	S4446-10	Pseudomonas guariconensis
GCA_024128175.1	JAMYBI000000000	SAMN29162773	S311-3	Pseudomonas guariconensis
GCA_024128115.1	JAMYBG000000000	SAMN29162771	VA160-2	Pseudomonas guariconensis
GCA_024127975.1	JAMYBJ000000000	SAMN29162774	S311-4	Pseudomonas guariconensis
GCA_024128315.1	JAMYBH000000000	SAMN29162772	S332-4	Pseudomonas guariconensis
GCA_024126715.1	JAMYBR000000000	SAMN29162782	S311-5	Pseudomonas mosselii
GCA_024128145.1	JAMYBT000000000	SAMN29162784	VE267-3	Pseudomonas protegens
GCA_024127415.1	JAMYBZ000000000	SAMN29162790	S311-8	Pseudomonas putida
GCA_024127465.1	JAMYCB000000000	SAMN29162792	VA159-1	Pseudomonas sp. 1
GCA_024126735.1	JAMYCC000000000	SAMN29162793	VE266-1	Pseudomonas sp. 2
GCA_024128275.1	JAMYBF000000000	SAMN29162770	S 311-6	Pseudomonas sp. S 311-6
GCA_024126635.1	JAMYBV000000000	SAMN29162786	VA159-2	Pseudomonas sp. VA159-2
GCA_025599315.1	JAOSGL000000000	SAMN29162769	VE 196-7	Pseudomonas sp. VE 196-7
GCA_024126555.1	JAMYBY000000000	SAMN29162789	VE 267-6A	Pseudomonas sp. VE 267-6A
GCA_024126775.1	JAMYCD000000000	SAMN29162794	VA158-11	Serratia fonticola
GCA_024126805.1	JAMYCJ000000000	SAMN29162800	VE193-12	Stenotrophomonas maltophilia
GCA_024126795.1	JAMYCK000000000	SAMN29162801	S252-3	Stenotrophomonas maltophilia
GCA_024126755.1	JAMYCL000000000	SAMN29162802	S248-2	Stenotrophomonas maltophilia
GCA_024126695.1	JAMYCN000000000	SAMN29162804	S246-4	Stenotrophomonas maltophilia
GCA_024126675.1	JAMYCQ000000000	SAMN29162807	S297-4	Stenotrophomonas maltophilia
GCA_024127455.1	JAMYCM000000000	SAMN29162803	S246-1	Stenotrophomonas maltophilia
GCA_024127395.1	JAMYCH000000000	SAMN29162798	VE245-1	Stenotrophomonas maltophilia
GCA_024127355.1	JAMYCI000000000	SAMN29162799	VE245-2	Stenotrophomonas maltophilia
GCA_024128245.1	JAMYCG000000000	SAMN29162797	VE244-3	Stenotrophomonas maltophilia
GCA_024128235.1	JAMYCO000000000	SAMN29162805	S249-2	Stenotrophomonas maltophilia
GCA_024128295.1	JAMYCF000000000	SAMN29162796	VE244-1	Stenotrophomonas maltophilia
GCA_024128335.1	JAMYCE000000000	SAMN29162795	VA158-8	Stenotrophomonas maltophilia
GCA_024128375.1	JAMYCP000000000	SAMN29162806	S297-3	Stenotrophomonas maltophilia
GCA_024128395.1	JAMYBS000000000	SAMN29162783	S300-3	Stutzerimonas nitrititolerans

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bacteria of animal origin

Detection of beta-lactamases in bacteria of animal origin

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