ID 861795 - BioProject

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Accession: PRJEB54957 ID: 861795

EMG produced TPA metagenomics assembly of PRJNA737271 data set (Piglet gut and in-barn manure from farms on Raised Without Antibiotics program display a reduced antimicrobial resistance but an increased prevalence of pathogens).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA737271, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Mixed.

Accession	PRJEB54957
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 24-Jul-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4888
WGS master	222
Publications
PubMed	1
PMC	1
Other datasets
BioSample	222
Assembly	222

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

222
222

Assembly	WGS	BioSample	Taxonomy
GCA_946410435.1	CAMKAI000000000	SAMEA110653528	Acidaminococcus fermentans
GCA_946404645.1	CAMJEL000000000	SAMEA110653537	Butyricicoccus porcorum
GCA_946402925.1	CAMIYD000000000	SAMEA110653506	Catenibacterium mitsuokai
GCA_946410835.1	CAMKBV000000000	SAMEA110653726	Dechloromonas aromatica (nom. nud.)
GCA_946407315.1	CAMJNO000000000	SAMEA110653594	Escherichia coli
GCA_946408395.1	CAMJSC000000000	SAMEA110653592	Eshraghiella crossota
GCA_946402865.1	CAMIXX000000000	SAMEA110653702	Faecalibacterium prausnitzii
GCA_946409195.1	CAMJVG000000000	SAMEA110653612	Lactobacillus amylovorus
GCA_946406335.1	CAMJKH000000000	SAMEA110653688	Lactobacillus amylovorus
GCA_946415185.1	CAMKRL000000000	SAMEA110653532	Lactobacillus johnsonii
GCA_946414485.1	CAMKOS000000000	SAMEA110653571	Lactobacillus johnsonii
GCA_946403225.1	CAMIZF000000000	SAMEA110653516	Megasphaera elsdenii
GCA_946409615.1	CAMJXB000000000	SAMEA110653635	Methanobrevibacter gottschalkii
GCA_946413845.1	CAMKMG000000000	SAMEA110653665	Methanobrevibacter ruminantium
GCA_946407825.1	CAMJPJ000000000	SAMEA110653556	Methanobrevibacter smithii
GCA_946411775.1	CAMKFF000000000	SAMEA110653672	Mitsuokella multacida
GCA_946405295.1	CAMJGS000000000	SAMEA110653569	Mobilibacterium timonense
GCA_946404465.1	CAMJDS000000000	SAMEA110653565	Peptostreptococcus russellii
GCA_946410225.1	CAMJZP000000000	SAMEA110653658	Phascolarctobacterium succinatutens
GCA_946403375.1	CAMIZT000000000	SAMEA110653616	Phascolarctobacterium succinatutens
GCA_946415135.1	CAMKRF000000000	SAMEA110653519	Segatella copri
GCA_946415485.1	CAMKST000000000	SAMEA110653721	Selenomonas ruminantium
GCA_946408035.1	CAMJQN000000000	SAMEA110653564	Streptococcus hyointestinalis
GCA_946403815.1	CAMJBK000000000	SAMEA110653626	Subdoligranulum variabile
GCA_946411785.1	CAMKFG000000000	SAMEA110653561	Vagococcus fluvialis
GCA_946410945.1	CAMKCE000000000	SAMEA110653682	[Eubacterium] saphenum
GCA_946409385.1	CAMJWH000000000	SAMEA110653653	uncultured Alistipes sp.
GCA_946406215.1	CAMJJV000000000	SAMEA110653614	uncultured Anaerostipes sp.
GCA_946409335.1	CAMJWB000000000	SAMEA110653536	uncultured Bacillales bacterium
GCA_946408405.1	CAMJSD000000000	SAMEA110653646	uncultured Bacillota bacterium
GCA_946415095.1	CAMKRC000000000	SAMEA110653572	uncultured Bacillota bacterium
GCA_946406485.1	CAMJKS000000000	SAMEA110653637	uncultured Bacillota bacterium
GCA_946409365.1	CAMJWF000000000	SAMEA110653676	uncultured Bacteroidales bacterium
GCA_946404555.1	CAMJEB000000000	SAMEA110653586	uncultured Bacteroidales bacterium
GCA_946415495.1	CAMKSU000000000	SAMEA110653625	uncultured Bacteroidales bacterium
GCA_946414455.1	CAMKOQ000000000	SAMEA110653634	uncultured Bacteroidales bacterium
GCA_946403495.1	CAMJAD000000000	SAMEA110653652	uncultured Bacteroidales bacterium
GCA_946410695.1	CAMKBF000000000	SAMEA110653667	uncultured Bacteroidales bacterium
GCA_946404735.1	CAMJEQ000000000	SAMEA110653628	uncultured Bacteroidales bacterium
GCA_946410715.1	CAMKBI000000000	SAMEA110653611	uncultured Bacteroidales bacterium
GCA_946406725.1	CAMJLN000000000	SAMEA110653661	uncultured Bacteroidales bacterium
GCA_946404525.1	CAMJDY000000000	SAMEA110653650	uncultured Bacteroidales bacterium
GCA_946410115.1	CAMJZC000000000	SAMEA110653618	uncultured Bacteroidales bacterium
GCA_946414845.1	CAMKQE000000000	SAMEA110653698	uncultured Bacteroidales bacterium
GCA_946413395.1	CAMKKJ000000000	SAMEA110653666	uncultured Bacteroidales bacterium
GCA_946411645.1	CAMKET000000000	SAMEA110653539	uncultured Bacteroidales bacterium
GCA_946413205.1	CAMKJN000000000	SAMEA110653587	uncultured Bacteroidales bacterium
GCA_946408265.1	CAMJRN000000000	SAMEA110653588	uncultured Bacteroidales bacterium
GCA_946408905.1	CAMJUD000000000	SAMEA110653686	uncultured Bacteroidales bacterium
GCA_946408235.1	CAMJRH000000000	SAMEA110653723	uncultured Bacteroidales bacterium
GCA_946404375.1	CAMJDO000000000	SAMEA110653600	uncultured Bacteroidales bacterium
GCA_946410315.1	CAMJZW000000000	SAMEA110653620	uncultured Bacteroidales bacterium
GCA_946410605.1	CAMKAX000000000	SAMEA110653621	uncultured Bacteroides sp.
GCA_946404715.1	CAMJER000000000	SAMEA110653508	uncultured Blautia sp.
GCA_946403055.1	CAMIYS000000000	SAMEA110653615	uncultured Blautia sp.
GCA_946414515.1	CAMKOV000000000	SAMEA110653624	uncultured Blautia sp.
GCA_946415855.1	CAMKUE000000000	SAMEA110653707	uncultured Clostridia bacterium
GCA_946405205.1	CAMJGL000000000	SAMEA110653655	uncultured Clostridia bacterium
GCA_946408895.1	CAMJUA000000000	SAMEA110653668	uncultured Clostridia bacterium
GCA_946410205.1	CAMJZK000000000	SAMEA110653629	uncultured Clostridia bacterium
GCA_946408785.1	CAMJTS000000000	SAMEA110653598	uncultured Clostridia bacterium
GCA_946406455.1	CAMJKO000000000	SAMEA110653529	uncultured Clostridia bacterium
GCA_946406825.1	CAMJLW000000000	SAMEA110653692	uncultured Clostridia bacterium
GCA_946405245.1	CAMJGP000000000	SAMEA110653638	uncultured Clostridia bacterium
GCA_946406105.1	CAMJJI000000000	SAMEA110653677	uncultured Clostridia bacterium
GCA_946403395.1	CAMIZS000000000	SAMEA110653584	uncultured Clostridia bacterium
GCA_946407575.1	CAMJON000000000	SAMEA110653643	uncultured Clostridia bacterium
GCA_946407275.1	CAMJNI000000000	SAMEA110653518	uncultured Clostridia bacterium
GCA_946415815.1	CAMKTY000000000	SAMEA110653657	uncultured Clostridia bacterium
GCA_946405615.1	CAMJHS000000000	SAMEA110653722	uncultured Clostridia bacterium
GCA_946403195.1	CAMIYZ000000000	SAMEA110653525	uncultured Clostridia bacterium
GCA_946409765.1	CAMJXR000000000	SAMEA110653576	uncultured Clostridia bacterium
GCA_946405955.1	CAMJJB000000000	SAMEA110653623	uncultured Clostridia bacterium
GCA_946410985.1	CAMKCJ000000000	SAMEA110653647	uncultured Clostridia bacterium
GCA_946405745.1	CAMJID000000000	SAMEA110653696	uncultured Clostridia bacterium
GCA_946406465.1	CAMJKT000000000	SAMEA110653530	uncultured Clostridia bacterium
GCA_946408275.1	CAMJRL000000000	SAMEA110653645	uncultured Clostridia bacterium
GCA_946415085.1	CAMKQZ000000000	SAMEA110653641	uncultured Clostridia bacterium
GCA_946410415.1	CAMKAG000000000	SAMEA110653709	uncultured Clostridia bacterium
GCA_946410955.1	CAMKCG000000000	SAMEA110653662	uncultured Clostridia bacterium
GCA_946406445.1	CAMJKM000000000	SAMEA110653704	uncultured Clostridia bacterium
GCA_946409575.1	CAMJWX000000000	SAMEA110653514	uncultured Clostridia bacterium
GCA_946409865.1	CAMJYA000000000	SAMEA110653550	uncultured Clostridia bacterium
GCA_946409055.1	CAMJUQ000000000	SAMEA110653578	uncultured Clostridia bacterium
GCA_946409925.1	CAMJYH000000000	SAMEA110653548	uncultured Clostridia bacterium
GCA_946409655.1	CAMJXF000000000	SAMEA110653644	uncultured Clostridia bacterium
GCA_946410005.1	CAMJYS000000000	SAMEA110653701	uncultured Clostridia bacterium
GCA_946405075.1	CAMJFZ000000000	SAMEA110653551	uncultured Clostridia bacterium
GCA_946401515.1	CAMIUX000000000	SAMEA110653663	uncultured Clostridia bacterium
GCA_946406885.1	CAMJLZ000000000	SAMEA110653639	uncultured Clostridia bacterium
GCA_946405875.1	CAMJIT000000000	SAMEA110653540	uncultured Clostridia bacterium
GCA_946411605.1	CAMKEQ000000000	SAMEA110653642	uncultured Clostridia bacterium
GCA_946406535.1	CAMJKY000000000	SAMEA110653695	uncultured Clostridia bacterium
GCA_946414755.1	CAMKPV000000000	SAMEA110653691	uncultured Clostridia bacterium
GCA_946406425.1	CAMJKQ000000000	SAMEA110653523	uncultured Clostridia bacterium
GCA_946413475.1	CAMKKT000000000	SAMEA110653664	uncultured Clostridia bacterium
GCA_946401905.1	CAMIVQ000000000	SAMEA110653581	uncultured Clostridia bacterium
GCA_946406395.1	CAMJKF000000000	SAMEA110653713	uncultured Clostridia bacterium
GCA_946413565.1	CAMKLE000000000	SAMEA110653725	uncultured Clostridium sp.
GCA_946405585.1	CAMJHV000000000	SAMEA110653538	uncultured Clostridium sp.
GCA_946414925.1	CAMKQL000000000	SAMEA110653527	uncultured Clostridium sp.
GCA_946414275.1	CAMKNV000000000	SAMEA110653656	uncultured Clostridium sp.
GCA_946413915.1	CAMKMN000000000	SAMEA110653708	uncultured Clostridium sp.
GCA_946405845.1	CAMJIP000000000	SAMEA110653690	uncultured Clostridium sp.
GCA_946404455.1	CAMJDR000000000	SAMEA110653617	uncultured Clostridium sp.
GCA_946408805.1	CAMJTR000000000	SAMEA110653706	uncultured Clostridium sp.
GCA_946402845.1	CAMIXT000000000	SAMEA110653520	uncultured Clostridium sp.
GCA_946404785.1	CAMJEX000000000	SAMEA110653509	uncultured Collinsella sp.
GCA_946409835.1	CAMJXX000000000	SAMEA110653583	uncultured Coprococcus sp.
GCA_946414205.1	CAMKNN000000000	SAMEA110653720	uncultured Dialister sp.
GCA_946402285.1	CAMIWB000000000	SAMEA110653543	uncultured Dorea sp.
GCA_946409975.1	CAMJYN000000000	SAMEA110653544	uncultured Dorea sp.
GCA_946409145.1	CAMJVA000000000	SAMEA110653566	uncultured Enterococcus sp.
GCA_946414415.1	CAMKOK000000000	SAMEA110653557	uncultured Enterococcus sp.
GCA_946408715.1	CAMJTM000000000	SAMEA110653507	uncultured Erysipelotrichaceae bacterium
GCA_946403305.1	CAMIZO000000000	SAMEA110653577	uncultured Erysipelotrichaceae bacterium
GCA_946410265.1	CAMJZS000000000	SAMEA110653534	uncultured Erysipelotrichaceae bacterium
GCA_946414475.1	CAMKOR000000000	SAMEA110653719	uncultured Eubacterium sp.
GCA_946410345.1	CAMJZY000000000	SAMEA110653671	uncultured Eubacterium sp.
GCA_946409985.1	CAMJYQ000000000	SAMEA110653631	uncultured Faecalibacterium sp.
GCA_946408935.1	CAMJUF000000000	SAMEA110653630	uncultured Faecalibacterium sp.
GCA_946408025.1	CAMJQJ000000000	SAMEA110653559	uncultured Faecalitalea sp.
GCA_946403325.1	CAMIZN000000000	SAMEA110653568	uncultured Faecalitalea sp.
GCA_946411495.1	CAMKEF000000000	SAMEA110653710	uncultured Lachnobacterium sp.
GCA_946414645.1	CAMKPK000000000	SAMEA110653670	uncultured Lachnobacterium sp.
GCA_946407995.1	CAMJQI000000000	SAMEA110653603	uncultured Lachnobacterium sp.
GCA_946402665.1	CAMIXC000000000	SAMEA110653574	uncultured Lachnobacterium sp.
GCA_946403785.1	CAMJBF000000000	SAMEA110653717	uncultured Lachnospiraceae bacterium
GCA_946413685.1	CAMKLW000000000	SAMEA110653549	uncultured Lachnospiraceae bacterium
GCA_946410705.1	CAMKBH000000000	SAMEA110653699	uncultured Lachnospiraceae bacterium
GCA_946407885.1	CAMJQB000000000	SAMEA110653678	uncultured Lachnospiraceae bacterium
GCA_946414495.1	CAMKOT000000000	SAMEA110653595	uncultured Lachnospiraceae bacterium
GCA_946410515.1	CAMKAO000000000	SAMEA110653640	uncultured Lachnospiraceae bacterium
GCA_946414555.1	CAMKPB000000000	SAMEA110653649	uncultured Lachnospiraceae bacterium
GCA_946407265.1	CAMJNJ000000000	SAMEA110653599	uncultured Lachnospiraceae bacterium
GCA_946411255.1	CAMKDK000000000	SAMEA110653683	uncultured Lachnospiraceae bacterium
GCA_946415075.1	CAMKQY000000000	SAMEA110653555	uncultured Lactobacillus sp.
GCA_946409675.1	CAMJXI000000000	SAMEA110653562	uncultured Lactobacillus sp.
GCA_946404915.1	CAMJFK000000000	SAMEA110653575	uncultured Lactobacillus sp.
GCA_946407415.1	CAMJOA000000000	SAMEA110653675	uncultured Lactobacillus sp.
GCA_946414545.1	CAMKOZ000000000	SAMEA110653554	uncultured Lactobacillus sp.
GCA_946403955.1	CAMJBR000000000	SAMEA110653560	uncultured Lactobacillus sp.
GCA_946409215.1	CAMJVM000000000	SAMEA110653697	uncultured Lactobacillus sp.
GCA_946403945.1	CAMJBP000000000	SAMEA110653524	uncultured Methanobrevibacter sp.
GCA_946404435.1	CAMJDK000000000	SAMEA110653521	uncultured Methanosphaera sp.
GCA_946409345.1	CAMJWD000000000	SAMEA110653610	uncultured Mogibacterium sp.
GCA_946404325.1	CAMJDF000000000	SAMEA110653654	uncultured Mollicutes bacterium
GCA_946407215.1	CAMJND000000000	SAMEA110653605	uncultured Mycoplasmatota bacterium
GCA_946403775.1	CAMJBE000000000	SAMEA110653636	uncultured Myxococcales bacterium
GCA_946413225.1	CAMKJQ000000000	SAMEA110653535	uncultured Olsenella sp.
GCA_946406245.1	CAMJJX000000000	SAMEA110653541	uncultured Oscillibacter sp.
GCA_946409065.1	CAMJUU000000000	SAMEA110653714	uncultured Parabacteroides sp.
GCA_946408875.1	CAMJTW000000000	SAMEA110653613	uncultured Parabacteroides sp.
GCA_946403255.1	CAMIZH000000000	SAMEA110653567	uncultured Peptoniphilaceae bacterium
GCA_946407535.1	CAMJOJ000000000	SAMEA110653712	uncultured Porphyromonadaceae bacterium
GCA_946408065.1	CAMJQP000000000	SAMEA110653687	uncultured Prevotella sp.
GCA_946412075.1	CAMKGF000000000	SAMEA110653526	uncultured Prevotella sp.
GCA_946411055.1	CAMKCQ000000000	SAMEA110653633	uncultured Prevotella sp.
GCA_946410935.1	CAMKCF000000000	SAMEA110653542	uncultured Prevotella sp.
GCA_946409965.1	CAMJYO000000000	SAMEA110653545	uncultured Prevotella sp.
GCA_946402985.1	CAMIYJ000000000	SAMEA110653680	uncultured Prevotella sp.
GCA_946402085.1	CAMIVT000000000	SAMEA110653727	uncultured Prevotella sp.
GCA_946408415.1	CAMJSI000000000	SAMEA110653622	uncultured Prevotella sp.
GCA_946409905.1	CAMJYE000000000	SAMEA110653585	uncultured Prevotella sp.
GCA_946405215.1	CAMJGR000000000	SAMEA110653716	uncultured Prevotella sp.
GCA_946414905.1	CAMKQM000000000	SAMEA110653591	uncultured Prevotella sp.
GCA_946405505.1	CAMJHL000000000	SAMEA110653659	uncultured Prevotella sp.
GCA_946405155.1	CAMJGG000000000	SAMEA110653606	uncultured Prevotella sp.
GCA_946405375.1	CAMJHA000000000	SAMEA110653689	uncultured Prevotella sp.
GCA_946412345.1	CAMKGW000000000	SAMEA110653570	uncultured Prevotella sp.
GCA_946414875.1	CAMKQI000000000	SAMEA110653607	uncultured Prevotella sp.
GCA_946405715.1	CAMJIB000000000	SAMEA110653684	uncultured Prevotella sp.
GCA_946411855.1	CAMKFM000000000	SAMEA110653715	uncultured Prevotella sp.
GCA_946414835.1	CAMKQD000000000	SAMEA110653522	uncultured Prevotella sp.
GCA_946410995.1	CAMKCM000000000	SAMEA110653685	uncultured Prevotella sp.
GCA_946406985.1	CAMJMJ000000000	SAMEA110653681	uncultured Prevotella sp.
GCA_946412235.1	CAMKGK000000000	SAMEA110653517	uncultured Prevotellaceae bacterium
GCA_946410925.1	CAMKCD000000000	SAMEA110653604	uncultured Prevotellaceae bacterium
GCA_946409085.1	CAMJUR000000000	SAMEA110653512	uncultured Prevotellaceae bacterium
GCA_946402825.1	CAMIXU000000000	SAMEA110653679	uncultured Prevotellaceae bacterium
GCA_946414235.1	CAMKNO000000000	SAMEA110653601	uncultured Prevotellaceae bacterium
GCA_946402885.1	CAMIYE000000000	SAMEA110653515	uncultured Prevotellaceae bacterium
GCA_946405455.1	CAMJHH000000000	SAMEA110653609	uncultured Prevotellaceae bacterium
GCA_946409175.1	CAMJVE000000000	SAMEA110653627	uncultured Prevotellaceae bacterium
GCA_946411365.1	CAMKDU000000000	SAMEA110653608	uncultured Pseudobutyrivibrio sp.
GCA_946414865.1	CAMKQG000000000	SAMEA110653573	uncultured Roseburia sp.
GCA_946415685.1	CAMKTK000000000	SAMEA110653582	uncultured Roseburia sp.
GCA_946403995.1	CAMJCA000000000	SAMEA110653619	uncultured Ruminococcus sp.
GCA_946410045.1	CAMJYU000000000	SAMEA110653694	uncultured Ruminococcus sp.
GCA_946414115.1	CAMKNF000000000	SAMEA110653547	uncultured Ruminococcus sp.
GCA_946405385.1	CAMJGY000000000	SAMEA110653553	uncultured Ruminococcus sp.
GCA_946402675.1	CAMIXI000000000	SAMEA110653513	uncultured Ruminococcus sp.
GCA_946407025.1	CAMJMM000000000	SAMEA110653705	uncultured Ruminococcus sp.
GCA_946403405.1	CAMIZX000000000	SAMEA110653552	uncultured Ruminococcus sp.
GCA_946404705.1	CAMJES000000000	SAMEA110653602	uncultured Ruminococcus sp.
GCA_946402345.1	CAMIWF000000000	SAMEA110653711	uncultured Ruminococcus sp.
GCA_946413515.1	CAMKKX000000000	SAMEA110653673	uncultured Selenomonadaceae bacterium
GCA_946405335.1	CAMJGV000000000	SAMEA110653693	uncultured Selenomonadaceae bacterium
GCA_946410195.1	CAMJZJ000000000	SAMEA110653531	uncultured Solobacterium sp.
GCA_946410795.1	CAMKBT000000000	SAMEA110653511	uncultured Solobacterium sp.
GCA_946409665.1	CAMJXG000000000	SAMEA110653510	uncultured Streptococcus sp.
GCA_946415305.1	CAMKSA000000000	SAMEA110653546	uncultured Subdoligranulum sp.
GCA_946404885.1	CAMJFH000000000	SAMEA110653718	uncultured Succinatimonas sp.
GCA_946408505.1	CAMJSP000000000	SAMEA110653563	uncultured Tetragenococcus sp.
GCA_946402705.1	CAMIXG000000000	SAMEA110653558	uncultured Tissierellia bacterium
GCA_946413605.1	CAMKLI000000000	SAMEA110653579	uncultured Treponema sp.
GCA_946412055.1	CAMKGE000000000	SAMEA110653590	uncultured Treponema sp.
GCA_946413455.1	CAMKKQ000000000	SAMEA110653660	uncultured Treponema sp.
GCA_946415465.1	CAMKSS000000000	SAMEA110653724	uncultured Treponema sp.
GCA_946411345.1	CAMKDS000000000	SAMEA110653703	uncultured Treponema sp.
GCA_946405405.1	CAMJHD000000000	SAMEA110653674	uncultured Veillonellaceae bacterium
GCA_946413955.1	CAMKMQ000000000	SAMEA110653700	uncultured Veillonellaceae bacterium
GCA_946413495.1	CAMKKV000000000	SAMEA110653651	uncultured bacterium
GCA_946404105.1	CAMJCM000000000	SAMEA110653580	uncultured bacterium
GCA_946405895.1	CAMJIR000000000	SAMEA110653597	uncultured bacterium
GCA_946411975.1	CAMKFX000000000	SAMEA110653593	uncultured bacterium
GCA_946406615.1	CAMJLH000000000	SAMEA110653648	uncultured bacterium
GCA_946414085.1	CAMKNC000000000	SAMEA110653533	uncultured bacterium
GCA_946412295.1	CAMKGR000000000	SAMEA110653596	uncultured bacterium
GCA_946403655.1	CAMJAS000000000	SAMEA110653669	uncultured bacterium
GCA_946414945.1	CAMKQP000000000	SAMEA110653589	uncultured bacterium
GCA_946408255.1	CAMJRM000000000	SAMEA110653632	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA737271 data set (Piglet gut and in-barn manure from farms on Raised Without Antibiotics program display a reduced antimicrobial resistance but an increased prevalence of pathogens).

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