ID 866831 - BioProject

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Accession: PRJEB55217 ID: 866831

EMG produced TPA metagenomics assembly of PRJNA726355 data set (Responsiveness of rhizosphere bacteria assembled from manipulated soil microbiome suppressed Ralstonia solanacearum invasion).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA726355, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55217
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 6-Aug-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	671
WGS master	89
Publications
PubMed	1
PMC	1
Other datasets
BioSample	90
Assembly	89

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

89
89

Assembly	WGS	BioSample	Taxonomy
GCA_946480725.1	CAMLKI000000000	SAMEA110699799	Cellvibrio mixtus
GCA_946481165.1	CAMLMZ000000000	SAMEA110699782	Flavobacterium daejeonense
GCA_946480315.1	CAMLJL000000000	SAMEA110699769	Flavobacterium daejeonense
GCA_946480645.1	CAMLKM000000000	SAMEA110699821	Ralstonia solanacearum
GCA_946482645.1	CAMLSC000000000	SAMEA110699817	uncultured Acidovorax sp.
GCA_946481185.1	CAMLMT000000000	SAMEA110699742	uncultured Acidovorax sp.
GCA_946481215.1	CAMLMN000000000	SAMEA110699773	uncultured Acidovorax sp.
GCA_946482405.1	CAMLRK000000000	SAMEA110699779	uncultured Agrobacterium sp.
GCA_946481075.1	CAMLMC000000000	SAMEA110699780	uncultured Alphaproteobacteria bacterium
GCA_946480475.1	CAMLJM000000000	SAMEA110699753	uncultured Alphaproteobacteria bacterium
GCA_946481105.1	CAMLMM000000000	SAMEA110699743	uncultured Alphaproteobacteria bacterium
GCA_946481615.1	CAMLOR000000000	SAMEA110699803	uncultured Aquimonas sp.
GCA_946480565.1	CAMLKR000000000	SAMEA110699760	uncultured Arenimonas sp.
GCA_946480525.1	CAMLLA000000000	SAMEA110699822	uncultured Asticcacaulis sp.
GCA_946482045.1	CAMLPZ000000000	SAMEA110699777	uncultured Asticcacaulis sp.
GCA_946480385.1	CAMLJP000000000	SAMEA110699752	uncultured Azospirillum sp.
GCA_946480715.1	CAMLKK000000000	SAMEA110699755	uncultured Bacteriovorax sp.
GCA_946481315.1	CAMLMH000000000	SAMEA110699813	uncultured Bacteriovorax sp.
GCA_946482295.1	CAMLRB000000000	SAMEA110699796	uncultured Bacteriovorax sp.
GCA_946482085.1	CAMLQL000000000	SAMEA110699785	uncultured Bacteriovorax sp.
GCA_946480675.1	CAMLKS000000000	SAMEA110699761	uncultured Bacteroidota bacterium
GCA_946480995.1	CAMLMF000000000	SAMEA110699736	uncultured Bdellovibrio sp.
GCA_946482355.1	CAMLRE000000000	SAMEA110699757	uncultured Bdellovibrio sp.
GCA_946481425.1	CAMLNT000000000	SAMEA110699808	uncultured Brevundimonas sp.
GCA_946480905.1	CAMLLV000000000	SAMEA110699788	uncultured Burkholderiales bacterium
GCA_946480465.1	CAMLJY000000000	SAMEA110699754	uncultured Burkholderiales bacterium
GCA_946480305.1	CAMLJQ000000000	SAMEA110699768	uncultured Caldimonas sp.
GCA_946480425.1	CAMLJT000000000	SAMEA110699750	uncultured Caldimonas sp.
GCA_946482285.1	CAMLQK000000000	SAMEA110699791	uncultured Candidatus Saccharibacteria bacterium
GCA_946480535.1	CAMLKA000000000	SAMEA110699762	uncultured Candidatus Saccharibacteria bacterium
GCA_946482575.1	CAMLRZ000000000	SAMEA110699818	uncultured Candidatus Saccharibacteria bacterium
GCA_946482345.1	CAMLRJ000000000	SAMEA110699795	uncultured Cellvibrio sp.
GCA_946481095.1	CAMLML000000000	SAMEA110699734	uncultured Cellvibrio sp.
GCA_946481735.1	CAMLOU000000000	SAMEA110699805	uncultured Cellvibrio sp.
GCA_946482385.1	CAMLRI000000000	SAMEA110699787	uncultured Cellvibrio sp.
GCA_946480695.1	CAMLKG000000000	SAMEA110699749	uncultured Cellvibrio sp.
GCA_946481195.1	CAMLNG000000000	SAMEA110699735	uncultured Chromatiaceae bacterium
GCA_946482325.1	CAMLRA000000000	SAMEA110699784	uncultured Chromatiaceae bacterium
GCA_946482615.1	CAMLSF000000000	SAMEA110699815	uncultured Chromatiaceae bacterium
GCA_946482115.1	CAMLQP000000000	SAMEA110699793	uncultured Comamonadaceae bacterium
GCA_946482595.1	CAMLSD000000000	SAMEA110699810	uncultured Comamonadaceae bacterium
GCA_946481355.1	CAMLNH000000000	SAMEA110699783	uncultured Curvibacter sp.
GCA_946481005.1	CAMLMG000000000	SAMEA110699741	uncultured Devosia sp.
GCA_946481445.1	CAMLOA000000000	SAMEA110699801	uncultured Devosia sp.
GCA_946480655.1	CAMLKN000000000	SAMEA110699746	uncultured Devosia sp.
GCA_946482335.1	CAMLRG000000000	SAMEA110699759	uncultured Duganella sp.
GCA_946481035.1	CAMLNK000000000	SAMEA110699772	uncultured Dyadobacter sp.
GCA_946482075.1	CAMLQG000000000	SAMEA110699797	uncultured Erythrobacteraceae bacterium
GCA_946480685.1	CAMLLI000000000	SAMEA110699745	uncultured Flammeovirgaceae bacterium
GCA_946481605.1	CAMLPA000000000	SAMEA110699820	uncultured Flavihumibacter sp.
GCA_946482545.1	CAMLRX000000000	SAMEA110699790	uncultured Flavihumibacter sp.
GCA_946480815.1	CAMLLB000000000	SAMEA110699798	uncultured Flavobacteriales bacterium
GCA_946482515.1	CAMLRS000000000	SAMEA110699807	uncultured Flavobacteriales bacterium
GCA_946480395.1	CAMLJK000000000	SAMEA110699756	uncultured Flavobacteriales bacterium
GCA_946482495.1	CAMLRV000000000	SAMEA110699800	uncultured Flavobacteriia bacterium
GCA_946482535.1	CAMLRU000000000	SAMEA110699792	uncultured Flavobacterium sp.
GCA_946481755.1	CAMLOY000000000	SAMEA110699816	uncultured Flavobacterium sp.
GCA_946481155.1	CAMLMK000000000	SAMEA110699740	uncultured Flavobacterium sp.
GCA_946481625.1	CAMLOZ000000000	SAMEA110699806	uncultured Haloferula sp.
GCA_946480945.1	CAMLLX000000000	SAMEA110699774	uncultured Hydrogenophaga sp.
GCA_946481205.1	CAMLNB000000000	SAMEA110699763	uncultured Kangiella sp.
GCA_946480585.1	CAMLKQ000000000	SAMEA110699751	uncultured Kangiella sp.
GCA_946482415.1	CAMLRC000000000	SAMEA110699737	uncultured Limnobacter sp.
GCA_946482315.1	CAMLQZ000000000	SAMEA110699781	uncultured Limnobacter sp.
GCA_946480825.1	CAMLLG000000000	SAMEA110699786	uncultured Lysobacteraceae bacterium
GCA_946482585.1	CAMLSI000000000	SAMEA110699809	uncultured Lysobacteraceae bacterium
GCA_946481585.1	CAMLOF000000000	SAMEA110699819	uncultured Macromonas sp.
GCA_946481275.1	CAMLMV000000000	SAMEA110699770	uncultured Massilia sp.
GCA_946481235.1	CAMLME000000000	SAMEA110699766	uncultured Methylobacillus sp.
GCA_946481135.1	CAMLMQ000000000	SAMEA110699765	uncultured Microbacteriaceae bacterium
GCA_946481565.1	CAMLOD000000000	SAMEA110699812	uncultured Microbacterium sp.
GCA_946482625.1	CAMLSH000000000	SAMEA110699804	uncultured Opitutaceae bacterium
GCA_946481515.1	CAMLNV000000000	SAMEA110699814	uncultured Pseudomonas sp.
GCA_946480365.1	CAMLJV000000000	SAMEA110699758	uncultured Pseudoxanthomonas sp.
GCA_946480855.1	CAMLLP000000000	SAMEA110699789	uncultured Rhizobium sp.
GCA_946480925.1	CAMLLU000000000	SAMEA110699776	uncultured Rivibacter sp.
GCA_946481025.1	CAMLNA000000000	SAMEA110699739	uncultured Rivibacter sp.
GCA_946482395.1	CAMLRD000000000	SAMEA110699738	uncultured Roseateles sp.
GCA_946480605.1	CAMLKW000000000	SAMEA110699748	uncultured Roseateles sp.
GCA_946481145.1	CAMLMJ000000000	SAMEA110699747	uncultured Sediminibacterium sp.
GCA_946481465.1	CAMLOC000000000	SAMEA110699802	uncultured Shinella sp.
GCA_946481175.1	CAMLMW000000000	SAMEA110699767	uncultured Sphingobacteriaceae bacterium
GCA_946482655.1	CAMLSA000000000	SAMEA110699811	uncultured Sphingomonas sp.
GCA_946482305.1	CAMLRF000000000	SAMEA110699778	uncultured Sphingopyxis sp.
GCA_946480345.1	CAMLJR000000000	SAMEA110699764	uncultured Spongiibacteraceae bacterium
GCA_946480555.1	CAMLLE000000000	SAMEA110699744	uncultured Verrucomicrobia subdivision 3 bacterium
GCA_946480965.1	CAMLMI000000000	SAMEA110699775	uncultured Verrucomicrobiales bacterium
GCA_946481225.1	CAMLNJ000000000	SAMEA110699771	uncultured Verrucomicrobiota bacterium
GCA_946482165.1	CAMLQS000000000	SAMEA110699794	uncultured Verrucomicrobiota bacterium

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EMG produced TPA metagenomics assembly of PRJNA726355 data set (Responsiveness of rhizosphere bacteria assembled from manipulated soil microbiome suppressed Ralstonia solanacearum invasion).

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