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Accession: PRJDB10679 ID: 891944

Bacteria

Agarose gel microcapsule enables easy-to-prepare, picolitre-scale single-cell genomics yielding near-complete genome sequences.

Single-cell genome analysis of human-gut bacterial strains and termite-gut bacterial community by MDA-in-AGM and FACS-MDA.
AccessionPRJDB10679
Data TypeGenome sequencing and assembly
ScopeMultiisolate
Publications
  • Aoki H et al., "Agarose gel microcapsules enable easy-to-prepare, picolitre-scale, single-cell genomics, yielding high-coverage genome sequences.", Sci Rep, 2022 Oct 18;12(1):17014
  • Published online: Aoki H et al., "Agarose gel microcapsules enable easy-to-prepare, picolitre-scale, single-cell genomics, yielding high-coverage genome sequences", Scientific Reports, 2022;12(1)
SubmissionRegistration date: 18-Oct-2022
Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center
RelevanceEnvironmental
Locus Tag PrefixOO827
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)50495
WGS master228
SRA Experiments354
Protein Sequences312955
Publications
PubMed1
PMC1
Other datasets
BioSample355
Assembly228
Assembly details:
Assembly levelNumber of Assemblies
228
228
AssemblyLevelWGSBioSampleInfraspecies IdTaxonomy
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MS495-93
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DH5[alpha]
GCA_025997455.1ContigBNUP00000000SAMD00253647
MS499-38
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PG1894-19
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PG1894-161
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PG1894-147
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PG1894-141
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MS495-2
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MS502-76
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MS499-57
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MS502-49
SRA Data Details
ParameterValue
Data volume, Gbases188
Data volume, Mbytes97572

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