ID 1010096 - BioProject

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Accession: PRJEB65453 ID: 1010096

EMG produced TPA metagenomics assembly of PRJNA385350 data set (Microbial metagenome of urinary tract infection).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA385350, and was assembled with metaspades v3. More...

Accession	PRJEB65453
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 29-Aug-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4538
WGS master	52
Publications
PubMed	1
PMC	1
Other datasets
BioSample	52
Assembly	52

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

52
52

Assembly	WGS	BioSample	Taxonomy
GCA_963510535.1	CAUPFG000000000	SAMEA114402885	Actinotignum sanguinis
GCA_963511595.1	CAUPJP000000000	SAMEA114402898	Actinotignum timonense
GCA_963510905.1	CAUPHH000000000	SAMEA114402907	Aerococcus christensenii
GCA_963510655.1	CAUPGM000000000	SAMEA114402889	Alloscardovia omnicolens
GCA_963511935.1	CAUPKO000000000	SAMEA114402878	Anaerococcus vaginalis
GCA_963511575.1	CAUPJY000000000	SAMEA114402890	Bifidobacterium breve
GCA_963511635.1	CAUPKE000000000	SAMEA114402899	Citrobacter koseri
GCA_963510835.1	CAUPGJ000000000	SAMEA114402894	Corynebacterium riegelii
GCA_963510715.1	CAUPGK000000000	SAMEA114402871	Dialister micraerophilus
GCA_963510695.1	CAUPGD000000000	SAMEA114402876	Enterococcus faecalis
GCA_963511715.1	CAUPKB000000000	SAMEA114402897	Escherichia coli
GCA_963511675.1	CAUPJO000000000	SAMEA114402886	Ezakiella coagulans
GCA_963512215.1	CAUPLD000000000	SAMEA114402868	Fannyhessea vaginae
GCA_963511745.1	CAUPJN000000000	SAMEA114402882	Fastidiosipila sanguinis
GCA_963511755.1	CAUPJW000000000	SAMEA114402858	Gardnerella vaginalis
GCA_963511645.1	CAUPJX000000000	SAMEA114402904	Gardnerella vaginalis
GCA_963511315.1	CAUPIA000000000	SAMEA114402859	Gardnerella vaginalis
GCA_963510795.1	CAUPFY000000000	SAMEA114402896	Gardnerella vaginalis
GCA_963510895.1	CAUPGX000000000	SAMEA114402903	Gardnerella vaginalis
GCA_963510825.1	CAUPGG000000000	SAMEA114402870	Hoylesella timonensis
GCA_963511565.1	CAUPJM000000000	SAMEA114402888	Klebsiella aerogenes
GCA_963512065.1	CAUPLP000000000	SAMEA114402874	Klebsiella pneumoniae
GCA_963511705.1	CAUPKG000000000	SAMEA114402891	Lactobacillus crispatus
GCA_963511775.1	CAUPKF000000000	SAMEA114402908	Lactobacillus gasseri
GCA_963510805.1	CAUPGQ000000000	SAMEA114402906	Lactobacillus iners
GCA_963510965.1	CAUPGV000000000	SAMEA114402905	Lactobacillus iners
GCA_963512235.1	CAUPLN000000000	SAMEA114402860	Lactobacillus jensenii
GCA_963510555.1	CAUPFW000000000	SAMEA114402880	Morganella morganii
GCA_963511025.1	CAUPHC000000000	SAMEA114402893	Oligella urethralis
GCA_963511585.1	CAUPJU000000000	SAMEA114402884	Peptoniphilus duerdenii
GCA_963511615.1	CAUPJQ000000000	SAMEA114402879	Peptoniphilus lacrimalis
GCA_963511295.1	CAUPIP000000000	SAMEA114402861	Prevotella amnii
GCA_963510815.1	CAUPGI000000000	SAMEA114402895	Prevotella bivia
GCA_963512245.1	CAUPLV000000000	SAMEA114402862	Prevotella disiens
GCA_963511965.1	CAUPKZ000000000	SAMEA114402875	Proteus mirabilis
GCA_963511855.1	CAUPKU000000000	SAMEA114402872	Pseudomonas aeruginosa
GCA_963511275.1	CAUPIC000000000	SAMEA114402863	Sneathia vaginalis
GCA_963510985.1	CAUPHK000000000	SAMEA114402909	Staphylococcus aureus
GCA_963511785.1	CAUPJT000000000	SAMEA114402902	Streptococcus agalactiae
GCA_963510785.1	CAUPFZ000000000	SAMEA114402881	Varibaculum cambriense
GCA_963510725.1	CAUPGN000000000	SAMEA114402873	Varibaculum massiliense
GCA_963510585.1	CAUPFF000000000	SAMEA114402887	uncultured Anaerococcus sp.
GCA_963512155.1	CAUPLC000000000	SAMEA114402864	uncultured Coriobacteriales bacterium
GCA_963511555.1	CAUPKH000000000	SAMEA114402892	uncultured Corynebacterium sp.
GCA_963512255.1	CAUPLL000000000	SAMEA114402866	uncultured Eubacteriales bacterium
GCA_963510735.1	CAUPGB000000000	SAMEA114402869	uncultured Lachnospiraceae bacterium
GCA_963511765.1	CAUPJK000000000	SAMEA114402900	uncultured Megasphaera sp.
GCA_963511625.1	CAUPJR000000000	SAMEA114402883	uncultured Peptoniphilaceae bacterium
GCA_963510705.1	CAUPGF000000000	SAMEA114402877	uncultured Porphyromonas sp.
GCA_963510775.1	CAUPGL000000000	SAMEA114402867	uncultured Tissierellia bacterium
GCA_963510495.1	CAUPFO000000000	SAMEA114402901	uncultured Veillonella sp.
GCA_963511085.1	CAUPHS000000000	SAMEA114402865	uncultured Veillonellaceae bacterium

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EMG produced TPA metagenomics assembly of PRJNA385350 data set (Microbial metagenome of urinary tract infection).

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