ID 1101017 - BioProject

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Accession: PRJNA1101017 ID: 1101017

GenomeTrakr WGS Validation Strain Set

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This project is a component of the Umbrella BioProject for PT isolates, control strains, and validation strain datasets

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3 additional projects are components of the Umbrella BioProject for PT isolates, control strains, and validation strain datasets.

This BioProject hosts genome sequence data for the FDA GenomeTrakr's validation strain set, which includes 32 bacterial species of foodborne pathogens and common contaminants. More...

Accession	PRJNA1101017
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 16-Apr-2024 FDA Center for Food Safety and Applied Nutrition
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	73
SRA Experiments	64
Protein Sequences	122875
Other datasets
BioSample	32
Assembly	31

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

31
31

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_046272075.1	5	SAMN41071145	GTVSS-022	Bacillus paranthracis
GCA_046271955.1	3	SAMN41071128	GTVSS-017	Campylobacter coli
GCA_046272015.1	2	SAMN41071130	GTVSS-018	Campylobacter jejuni
GCA_046272115.1	1	SAMN41071142	GTVSS-028	Citrobacter braakii
GCA_046272085.1	4	SAMN41071144	GTVSS-021	Cronobacter sakazakii
GCA_046272195.1	2	SAMN41071126	GTVSS-029	Enterobacter cancerogenus
GCA_046272025.1	2	SAMN41071119	GTVSS-020	Escherichia coli O121
GCA_046272065.1	3	SAMN41168789	GTVSS-023	Escherichia coli O157:H7
GCA_046272125.1	1	SAMN41071133	GTVSS-027	Klebsiella pneumoniae
GCA_046272005.1	2	SAMN41071131	GTVSS-019	Listeria innocua
GCA_046271985.1	1	SAMN41071125	GTVSS-014	Listeria monocytogenes
GCA_046271935.1	1	SAMN41071138	GTVSS-011	Listeria monocytogenes
GCA_046271925.1	1	SAMN41071141	GTVSS-012	Listeria monocytogenes
GCA_046271915.1	1	SAMN41071118	GTVSS-013	Listeria monocytogenes
GCA_046272095.1	1	SAMN41071143	GTVSS-006	Listeria monocytogenes
GCA_046272175.1	2	SAMN41071135	GTVSS-009	Listeria monocytogenes
GCA_046272045.1	1	SAMN41071124	GTVSS-024	Pseudomonas aeruginosa
GCA_046272155.1	1	SAMN41071137	GTVSS-025	Pseudomonas paracarnis
GCA_046271945.1	3	SAMN41071136	GTVSS-010	Salmonella enterica subsp. enterica serovar Derby
GCA_046272145.1	2	SAMN41071139	GTVSS-003	Salmonella enterica subsp. enterica serovar Bareilly
GCA_046272135.1	2	SAMN41071132	GTVSS-004	Salmonella enterica subsp. enterica serovar Bareilly
GCA_046272035.1	4	SAMN41165625	GTVSS-002	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_046272055.1	2	SAMN41071123	GTVSS-001	Salmonella enterica subsp. enterica serovar Bareilly
GCA_046272105.1	3	SAMN41071146	GTVSS-005	Salmonella enterica subsp. enterica serovar Bareilly
GCA_046271905.1	1	SAMN41071120	GTVSS-030	Salmonella enterica subsp. enterica
GCA_046271995.1	4	SAMN41165626	GTVSS-015	Shigella dysenteriae
GCA_046271975.1	6	SAMN41165627	GTVSS-016	Shigella sonnei
GCA_046272165.1	3	SAMN41071129	GTVSS-008	Staphylococcus aureus
GCA_046272185.1	2	SAMN41071127	GTVSS-007	Staphylococcus aureus
GCA_046271965.1	3	SAMN41071134	GTVSS-032	Vibrio parahaemolyticus
GCA_046271895.1	4	SAMN41071121	GTVSS-031	Vibrio parahaemolyticus

SRA Data Details

Parameter	Value
Data volume, Gbases	50
Data volume, Mbytes	31519

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GenomeTrakr WGS Validation Strain Set

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