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Accession: PRJNA1132810 ID: 1132810

Epidemiology of CPE in patients returning from sub-Saharan Africa

Isolates send to the french NRC for AMR from patients returning form SSA
AccessionPRJNA1132810
Data TypeGenome sequencing
ScopeMultispecies
SubmissionRegistration date: 8-Jul-2024
Hopital Bicetre
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)275
Other datasets
BioSample276
Assembly276
Assembly details:
Assembly levelNumber of Assemblies
1
275
276
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_041206525.1ContigJBGEUJ000000000SAMN42359278
140B1
GCA_041206065.1ContigJBGETO000000000SAMN42359299
161C7
GCA_041205885.1ContigJBGETB000000000SAMN42359312
177I1
GCA_041204065.1ContigJBGERQ000000000SAMN42359349
225B4
GCA_041203905.1ContigJBGERL000000000SAMN42359354
233G2
GCA_041202715.1ContigJBGEPB000000000SAMN42359417
282B3
GCA_041202435.1ContigJBGEOP000000000SAMN42359429
308C10
GCA_041201485.1ContigJBGEMT000000000SAMN42359477
315H9
GCA_041200895.1ContigJBGELT000000000SAMN42359503
333J6
GCA_041203185.1ContigJBGEQA000000000SAMN42359391
270H7
GCA_041201305.1ContigJBGEML000000000SAMN42359485
319J2
GCA_041206725.1ContigJBGEUT000000000SAMN42359268
96F9
GCA_041206705.1ContigJBGEUR000000000SAMN42359270
107F2
GCA_041206565.1ContigJBGEUK000000000SAMN42359277
136H1
GCA_041206795.1ContigJBGEUX000000000SAMN42359264
95X9
GCA_041206605.1ContigJBGEUN000000000SAMN42359274
125D2
GCA_041205955.1ContigJBGETI000000000SAMN42359305
166B3
GCA_041202405.1ContigJBGEOO000000000SAMN42359430
309I3
GCA_041202495.1ContigJBGEOQ000000000SAMN42359428
307X4
GCA_041204025.1ContigJBGERT000000000SAMN42359346
216A9
GCA_041204405.1ContigJBGESJ000000000SAMN42359330
199X8
GCA_041204645.1ContigJBGESZ000000000SAMN42359314
178C6
GCA_041204525.1ContigJBGESO000000000SAMN42359325
187J9
GCA_041204045.1ContigJBGERR000000000SAMN42359348
222X4
GCA_041202535.1ContigJBGEOT000000000SAMN42359425
305C3
GCA_041201505.1ContigJBGEMV000000000SAMN42359475
334G1
GCA_041201415.1ContigJBGEMQ000000000SAMN42359480
316J9
GCA_041200355.1ContigJBGEKO000000000SAMN42359534
358K4
GCA_041200635.1ContigJBGELC000000000SAMN42359520
348K2
GCA_041200595.1ContigJBGELB000000000SAMN42359521
349F6
GCA_041205925.1ContigJBGETF000000000SAMN42359308
171X1
GCA_041204125.1ContigJBGERW000000000SAMN42359343
207H2
GCA_041200815.1ContigJBGELM000000000SAMN42359510
343K10
GCA_041206645.1ContigJBGEUP000000000SAMN42359272
107X1
GCA_041200565.1ContigJBGELA000000000SAMN42359522
320C7
GCA_041200545.1ContigJBGEKY000000000SAMN42359524
334A6
GCA_041200535.1ContigJBGEKZ000000000SAMN42359523
352J9
GCA_041200525.1ContigJBGEKX000000000SAMN42359525
355G4
GCA_041200505.1ContigJBGEKW000000000SAMN42359526
355I10
GCA_041200475.1ContigJBGEKU000000000SAMN42359528
323H4
GCA_041200455.1ContigJBGEKT000000000SAMN42359529
332K4
GCA_041200425.1ContigJBGEKR000000000SAMN42359531
358G7
GCA_041200415.1ContigJBGEKV000000000SAMN42359527
316X10
GCA_041200405.1ContigJBGEKS000000000SAMN42359530
325A3
GCA_041200335.1ContigJBGEKN000000000SAMN42359535
323H6
GCA_041200305.1ContigJBGEKM000000000SAMN42359536
345I6
GCA_041200315.1ContigJBGEKP000000000SAMN42359533
359D7
GCA_041200715.1ContigJBGELI000000000SAMN42359514
347A9
GCA_041200735.1ContigJBGELH000000000SAMN42359515
347F6
GCA_041200685.1ContigJBGELG000000000SAMN42359516
348D6
GCA_041200695.1ContigJBGELE000000000SAMN42359518
354B6
GCA_041200665.1ContigJBGELF000000000SAMN42359517
351I8
GCA_041200625.1ContigJBGELD000000000SAMN42359519
341D10
GCA_041200855.1ContigJBGELO000000000SAMN42359508
322A7
GCA_041200805.1ContigJBGELN000000000SAMN42359509
348I1
GCA_041202455.1ContigJBGEOS000000000SAMN42359426
305J2
GCA_041201325.1ContigJBGEMK000000000SAMN42359486
359I7
GCA_041200795.1ContigJBGELL000000000SAMN42359511
334C8
GCA_041201035.1ContigJBGELX000000000SAMN42359499
327G8
GCA_041200995.1ContigJBGELW000000000SAMN42359500
337B8
GCA_041200985.1ContigJBGELU000000000SAMN42359502
351H10
GCA_041200965.1ContigJBGELR000000000SAMN42359505
336C2
GCA_041200945.1ContigJBGELS000000000SAMN42359504
351I10
GCA_041200905.1ContigJBGELP000000000SAMN42359507
343K2
GCA_041201285.1ContigJBGEMJ000000000SAMN42359487
348H3
GCA_041201265.1ContigJBGEME000000000SAMN42359492
322D4
GCA_041201235.1ContigJBGEMI000000000SAMN42359488
331C1
GCA_041201195.1ContigJBGEMG000000000SAMN42359490
326B1
GCA_041201115.1ContigJBGEMC000000000SAMN42359494
357F1
GCA_041201135.1ContigJBGEMD000000000SAMN42359493
345G1
GCA_041201085.1ContigJBGELZ000000000SAMN42359497
326F5
GCA_041201095.1ContigJBGEMB000000000SAMN42359495
310J3
GCA_041201385.1ContigJBGEMO000000000SAMN42359482
355I7
GCA_041201365.1ContigJBGEMP000000000SAMN42359481
354J4
GCA_041202515.1ContigJBGEOU000000000SAMN42359424
301F9
GCA_041201455.1ContigJBGEMS000000000SAMN42359478
351I9
GCA_041202105.1ContigJBGENY000000000SAMN42359446
345D7
GCA_041202085.1ContigJBGENX000000000SAMN42359447
340H6
GCA_041202065.1ContigJBGENW000000000SAMN42359448
342H2
GCA_041202025.1ContigJBGENV000000000SAMN42359449
357D10
GCA_041202005.1ContigJBGENU000000000SAMN42359450
351I2
GCA_041202015.1ContigJBGENS000000000SAMN42359452
330F10
GCA_041201985.1ContigJBGENT000000000SAMN42359451
320F3
GCA_041201965.1ContigJBGENR000000000SAMN42359453
332A8
GCA_041201945.1ContigJBGENQ000000000SAMN42359454
354D2
GCA_041201915.1ContigJBGENG000000000SAMN42359464
318X9
GCA_041201905.1ContigJBGENO000000000SAMN42359456
353A5
GCA_041201885.1ContigJBGENP000000000SAMN42359455
345I5
GCA_041201865.1ContigJBGENN000000000SAMN42359457
357F9
GCA_041201845.1ContigJBGENM000000000SAMN42359458
311C2
GCA_041201775.1ContigJBGENF000000000SAMN42359465
319H3
GCA_041201745.1ContigJBGENJ000000000SAMN42359461
315A9
GCA_041201785.1ContigJBGENL000000000SAMN42359459
314J8
GCA_041201755.1ContigJBGENI000000000SAMN42359462
316D3
GCA_041201765.1ContigJBGENK000000000SAMN42359460
314X7
GCA_041201725.1ContigJBGENE000000000SAMN42359466
320F6
GCA_041201665.1ContigJBGENB000000000SAMN42359469
330A6
GCA_041201695.1ContigJBGENH000000000SAMN42359463
318I6
GCA_041201675.1ContigJBGENC000000000SAMN42359468
325B6
GCA_041201635.1ContigJBGENA000000000SAMN42359470
332G9
GCA_041201625.1ContigJBGEND000000000SAMN42359467
323X7
GCA_041201595.1ContigJBGEMY000000000SAMN42359472
337B9
GCA_041201585.1ContigJBGEMZ000000000SAMN42359471
334I5
GCA_041201565.1ContigJBGEMW000000000SAMN42359474
351D8
GCA_041201545.1ContigJBGEMX000000000SAMN42359473
350H9
GCA_041202615.1ContigJBGEOX000000000SAMN42359421
304D8
GCA_041202695.1ContigJBGEPD000000000SAMN42359414
296B6
GCA_041202675.1ContigJBGEPC000000000SAMN42359415
301J3
GCA_041202655.1ContigJBGEOZ000000000SAMN42359419
296I1
GCA_041202965.1ContigJBGEPQ000000000SAMN42359401
305C2
GCA_041202945.1ContigJBGEPP000000000SAMN42359402
279F9
GCA_041202385.1ContigJBGEOL000000000SAMN42359433
317B1
GCA_041202365.1ContigJBGEON000000000SAMN42359431
348I9
GCA_041202335.1ContigJBGEOI000000000SAMN42359436
337G7
GCA_041202325.1ContigJBGEOK000000000SAMN42359434
322J2
GCA_041202305.1ContigJBGEOJ000000000SAMN42359435
320X1
GCA_041202265.1ContigJBGEOG000000000SAMN42359438
320X2
GCA_041202275.1ContigJBGEOH000000000SAMN42359437
316C1
GCA_041202245.1ContigJBGEOF000000000SAMN42359439
326F2
GCA_041202195.1ContigJBGENZ000000000SAMN42359445
327G9
GCA_041204385.1ContigJBGESH000000000SAMN42359332
220D3
GCA_041204485.1ContigJBGESM000000000SAMN42359327
183X5
GCA_041204345.1ContigJBGESI000000000SAMN42359331
234F4
GCA_041204285.1ContigJBGESB000000000SAMN42359338
221C4
GCA_041204605.1ContigJBGESV000000000SAMN42359318
190I10
GCA_041204585.1ContigJBGEST000000000SAMN42359320
194A7
GCA_041204565.1ContigJBGESU000000000SAMN42359319
180D5
GCA_041204545.1ContigJBGESS000000000SAMN42359321
165B5
GCA_041203885.1ContigJBGERJ000000000SAMN42359356
225I3
GCA_041203845.1ContigJBGERI000000000SAMN42359357
216H4
GCA_041203825.1ContigJBGERH000000000SAMN42359358
229C10
GCA_041203735.1ContigJBGERB000000000SAMN42359364
256J2
GCA_041203725.1ContigJBGERC000000000SAMN42359363
206B8
GCA_041203705.1ContigJBGEQZ000000000SAMN42359366
245F4
GCA_041203685.1ContigJBGEQY000000000SAMN42359367
273F10
GCA_041203665.1ContigJBGERA000000000SAMN42359365
252F6
GCA_041203645.1ContigJBGEQX000000000SAMN42359368
268B6
GCA_041203785.1ContigJBGERE000000000SAMN42359361
207A5
GCA_041203585.1ContigJBGEQS000000000SAMN42359373
248D6
GCA_041203565.1ContigJBGEQT000000000SAMN42359372
247D5
GCA_041203165.1ContigJBGEPZ000000000SAMN42359392
251G4
GCA_041203145.1ContigJBGEPX000000000SAMN42359394
277B4
GCA_041203125.1ContigJBGEPY000000000SAMN42359393
297F1
GCA_041203105.1ContigJBGEPW000000000SAMN42359395
289I8
GCA_041203085.1ContigJBGEPV000000000SAMN42359396
295H2
GCA_041203065.1ContigJBGEPR000000000SAMN42359400
308A7
GCA_041203045.1ContigJBGEPT000000000SAMN42359398
306X5
GCA_041203025.1ContigJBGEPU000000000SAMN42359397
301J4
GCA_041203005.1ContigJBGEPS000000000SAMN42359399
307G7
GCA_041202905.1ContigJBGEPM000000000SAMN42359405
286F2
GCA_041202885.1ContigJBGEPL000000000SAMN42359406
288F6
GCA_041202865.1ContigJBGEPI000000000SAMN42359409
300X2
GCA_041202845.1ContigJBGEPK000000000SAMN42359407
292B6
GCA_041202425.1ContigJBGEOM000000000SAMN42359432
354I3
GCA_041202815.1ContigJBGEPJ000000000SAMN42359408
295H3
GCA_041202795.1ContigJBGEPH000000000SAMN42359410
307G8
GCA_041202775.1ContigJBGEPG000000000SAMN42359411
308D9
GCA_041202755.1ContigJBGEPF000000000SAMN42359412
310B2
GCA_041202735.1ContigJBGEPE000000000SAMN42359413
303B4
GCA_041203525.1ContigJBGEQR000000000SAMN42359374
257C8
GCA_041203505.1ContigJBGEQO000000000SAMN42359377
261C5
GCA_041203485.1ContigJBGEQQ000000000SAMN42359375
257J9
GCA_041203465.1ContigJBGEQN000000000SAMN42359378
268B9
GCA_041203445.1ContigJBGEQP000000000SAMN42359376
258B4
GCA_041203425.1ContigJBGEQM000000000SAMN42359379
273B3
GCA_041203405.1ContigJBGEQH000000000SAMN42359384
247J1
GCA_041203385.1ContigJBGEQL000000000SAMN42359380
273G1
GCA_041203345.1ContigJBGEQJ000000000SAMN42359382
254I3
GCA_041203325.1ContigJBGEQK000000000SAMN42359381
274J6
GCA_041203305.1ContigJBGEQG000000000SAMN42359385
267G1
GCA_041203285.1ContigJBGEQD000000000SAMN42359388
258B5
GCA_041203245.1ContigJBGEQE000000000SAMN42359387
273G2
GCA_041204425.1ContigJBGESK000000000SAMN42359329
196J6
GCA_041203205.1ContigJBGEQB000000000SAMN42359390
247C7
GCA_041206625.1ContigJBGEUO000000000SAMN42359273
107F5
GCA_041206665.1ContigJBGEUS000000000SAMN42359269
81H10
GCA_041206765.1ContigJBGEUW000000000SAMN42359265
77J4
GCA_041206745.1ContigJBGEUU000000000SAMN42359267
82A1
GCA_041206885.1ScaffoldJBGEVA000000000SAMN42359261
71I8
GCA_041206835.1ContigJBGEUZ000000000SAMN42359262
75X10
GCA_041206825.1ContigJBGEUV000000000SAMN42359266
86I3
GCA_041206785.1ContigJBGEUY000000000SAMN42359263
76F9
GCA_041206585.1ContigJBGEUM000000000SAMN42359275
113B5
GCA_041206005.1ContigJBGETJ000000000SAMN42359304
160H5
GCA_041205985.1ContigJBGETK000000000SAMN42359303
196F6
GCA_041205945.1ContigJBGETG000000000SAMN42359307
175F9
GCA_041206045.1ContigJBGETH000000000SAMN42359306
164X1
GCA_041206485.1ContigJBGEUG000000000SAMN42359281
158X1
GCA_041206465.1ContigJBGEUH000000000SAMN42359280
129C10
GCA_041206445.1ContigJBGEUI000000000SAMN42359279
158X2
GCA_041206425.1ContigJBGEUD000000000SAMN42359284
188B7
GCA_041206405.1ContigJBGEUE000000000SAMN42359283
180D4
GCA_041206385.1ContigJBGEUB000000000SAMN42359286
169F9
GCA_041206365.1ContigJBGEUA000000000SAMN42359287
177J4
GCA_041206345.1ContigJBGEUC000000000SAMN42359285
165C8
GCA_041206325.1ContigJBGETV000000000SAMN42359292
183X3
GCA_041206305.1ContigJBGETZ000000000SAMN42359288
184A2
GCA_041206285.1ContigJBGETY000000000SAMN42359289
195A8
GCA_041206265.1ContigJBGETW000000000SAMN42359291
182I9
GCA_041206245.1ContigJBGETU000000000SAMN42359293
188B8
GCA_041206225.1ContigJBGETX000000000SAMN42359290
178J1
GCA_041206145.1ContigJBGETS000000000SAMN42359295
194A8
GCA_041206175.1ContigJBGETR000000000SAMN42359296
164X8
GCA_041206155.1ContigJBGETQ000000000SAMN42359297
187F3
GCA_041206165.1ContigJBGETT000000000SAMN42359294
188X4
GCA_041205825.1ContigJBGESY000000000SAMN42359315
194H3
GCA_041205805.1ContigJBGESQ000000000SAMN42359323
181J1
GCA_041205785.1ContigJBGETA000000000SAMN42359313
186G10
GCA_041205765.1ContigJBGESP000000000SAMN42359324
168F1
GCA_041928975.1ContigJBHFKR000000000SAMN42359416
282I2
GCA_041206505.1ContigJBGEUF000000000SAMN42359282
190J9
GCA_041202595.1ContigJBGEOY000000000SAMN42359420
297D6
GCA_041202575.1ContigJBGEOV000000000SAMN42359423
301J10
GCA_041202555.1ContigJBGEOW000000000SAMN42359422
297J2
GCA_041202475.1ContigJBGEOR000000000SAMN42359427
306D6
GCA_041202925.1ContigJBGEPN000000000SAMN42359404
303J6
GCA_041202635.1ContigJBGEPA000000000SAMN42359418
285G7
GCA_041202185.1ContigJBGEOC000000000SAMN42359442
319F5
GCA_041202165.1ContigJBGEOD000000000SAMN42359441
335K10
GCA_041202175.1ContigJBGEOE000000000SAMN42359440
312J9
GCA_041202145.1ContigJBGEOB000000000SAMN42359443
331I4
GCA_041202125.1ContigJBGEOA000000000SAMN42359444
354J5
GCA_041201445.1ContigJBGEMR000000000SAMN42359479
316J2
GCA_041201335.1ContigJBGEMN000000000SAMN42359483
318B5
GCA_041201405.1ContigJBGEMM000000000SAMN42359484
318H10
GCA_041201065.1ContigJBGELY000000000SAMN42359498
330G4
GCA_041201025.1ContigJBGELV000000000SAMN42359501
332J2
GCA_041201225.1ContigJBGEMH000000000SAMN42359489
320G7
GCA_041201185.1ContigJBGEMF000000000SAMN42359491
322A10
GCA_041200885.1ContigJBGELQ000000000SAMN42359506
338J9
GCA_041200725.1ContigJBGELJ000000000SAMN42359513
344B4
GCA_041200785.1ContigJBGELK000000000SAMN42359512
344B3
GCA_041203225.1ContigJBGEQF000000000SAMN42359386
251B8
GCA_041203265.1ContigJBGEQC000000000SAMN42359389
257I7
GCA_041202985.1ContigJBGEPO000000000SAMN42359403
289X9
GCA_041203545.1ContigJBGEQU000000000SAMN42359371
266C1
GCA_041203765.1ContigJBGERD000000000SAMN42359362
239G2
GCA_041204725.1ContigJBGETD000000000SAMN42359310
174C8
GCA_041203625.1ContigJBGEQW000000000SAMN42359369
261H7
GCA_041203605.1ContigJBGEQV000000000SAMN42359370
257J6
GCA_041203805.1ContigJBGERF000000000SAMN42359360
238F8
GCA_041204005.1ContigJBGERO000000000SAMN42359351
229D3
GCA_041203985.1ContigJBGERP000000000SAMN42359350
227J7
GCA_041203955.1ContigJBGERN000000000SAMN42359352
229I7
GCA_041203945.1ContigJBGERM000000000SAMN42359353
230C3
GCA_041203925.1ContigJBGERK000000000SAMN42359355
234D3
GCA_041204505.1ContigJBGESR000000000SAMN42359322
184B1
GCA_041204625.1ContigJBGESX000000000SAMN42359316
178J3
GCA_041204265.1ContigJBGESC000000000SAMN42359337
212D10
GCA_041204245.1ContigJBGESD000000000SAMN42359336
235C9
GCA_041204325.1ContigJBGESF000000000SAMN42359334
217J9
GCA_041204305.1ContigJBGESE000000000SAMN42359335
224B9
GCA_041204465.1ContigJBGESN000000000SAMN42359326
190J7
GCA_041204445.1ContigJBGESL000000000SAMN42359328
195C6
GCA_041204365.1ContigJBGESG000000000SAMN42359333
214I8
GCA_041204105.1ContigJBGERV000000000SAMN42359344
209C4
GCA_041204085.1ContigJBGERS000000000SAMN42359347
221X6
GCA_041204205.1ContigJBGERZ000000000SAMN42359340
199J3
GCA_041204165.1ContigJBGERX000000000SAMN42359342
206B3
GCA_041204175.1ContigJBGERU000000000SAMN42359345
213G4
GCA_041204145.1ContigJBGERY000000000SAMN42359341
200H7
GCA_041200365.1ContigJBGEKQ000000000SAMN42359532
358C9
GCA_041206545.1ContigJBGEUL000000000SAMN42359276
136A6
GCA_041206685.1ContigJBGEUQ000000000SAMN42359271
107F7
GCA_041206025.1ContigJBGETM000000000SAMN42359301
161H9
GCA_041206105.1ContigJBGETL000000000SAMN42359302
161J6
GCA_041206085.1ContigJBGETN000000000SAMN42359300
161H6
GCA_041205865.1ContigJBGETE000000000SAMN42359309
173F9
GCA_041205845.1ContigJBGESW000000000SAMN42359317
183B3
GCA_041206125.1ContigJBGETP000000000SAMN42359298
188H9
GCA_041204225.1ContigJBGESA000000000SAMN42359339
228A4
GCA_041203365.1ContigJBGEQI000000000SAMN42359383
263F6
GCA_041201525.1ContigJBGEMU000000000SAMN42359476
330A5
GCA_041201105.1ContigJBGEMA000000000SAMN42359496
328B3
GCA_041205905.1ContigJBGETC000000000SAMN42359311
177A6
GCA_041203865.1ContigJBGERG000000000SAMN42359359
237J8

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