Isolates from retail Sea Food (ID 800017) - BioProject

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Accession: PRJNA800017 ID: 800017

Isolates from retail Sea Food

CVM NARMS Retail Seafood Isolates

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This project is a component of the FDA CVM

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6 additional projects are components of the FDA CVM.

Whole genome sequencing of foodborne pathogens isolated from retail seafood as part of the US Food and Drug Administration surveillance project for NARMS

Accession	PRJNA800017
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Parker EM et al., "Transcontinental Dissemination of Enterobacterales Harboring bla(NDM-1) in Retail Frozen Shrimp.", Foodborne Pathog Dis, 2024 Apr 2;
Submission	Registration date: 24-Jan-2022 FDA-CVM
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	180
WGS master	73
Genomic DNA	107
SRA Experiments	384
Protein Sequences	117530
Publications
PubMed	1
Other datasets
BioSample	389
Assembly	103

Assembly details:

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Assembly level

Number of Assemblies

26
4
73
103

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_022967675.1	ABFUCJ000000000		SAMN26198640	19SC04SH08	Acinetobacter baumannii
GCA_022967655.1	ABFUCI000000000		SAMN26198433	19MO01SA02	Acinetobacter baumannii
GCA_022967635.1	ABFUCH000000000		SAMN26198626	19SD04SA05	Acinetobacter baumannii
GCA_022967375.1	ABFUBT000000000		SAMN26198672	19SC05SA06-2	Acinetobacter baumannii
GCA_022967355.1	ABFUBV000000000		SAMN26198673	19SC05SA07	Acinetobacter baumannii
GCA_022967335.1	ABFUBR000000000		SAMN26198669	19SC05SA05-1	Acinetobacter baumannii
GCA_022967315.1	ABFUBQ000000000		SAMN26198668	19SC05SA01	Acinetobacter baumannii
GCA_022967295.1	ABFUBS000000000		SAMN26198671	19SC05SA06-1	Acinetobacter baumannii
GCA_022967275.1	ABFUBO000000000		SAMN26198564	19SD02SH05	Acinetobacter baumannii
GCA_022967255.1	ABFUBP000000000		SAMN26198577	19NY01SH05	Acinetobacter baumannii
GCA_022967235.1	ABFUBL000000000		SAMN26198480	19SC02SA05	Acinetobacter baumannii
GCA_022967195.1	ABFUBN000000000		SAMN26198562	19SD02SA02	Acinetobacter baumannii
GCA_022967095.1	ABFUBA000000000		SAMN26198694	19NY05SA03-3	Acinetobacter baumannii
GCA_022967075.1	ABFUBB000000000		SAMN26198703	19NY05SH05	Acinetobacter baumannii
GCA_022967055.1	ABFUAZ000000000		SAMN26198693	19NY05SA03-2	Acinetobacter baumannii
GCA_022967015.1	ABFUAX000000000		SAMN26198692	19NY05SA03-1	Acinetobacter baumannii
GCA_022966975.1	ABFUAW000000000		SAMN26198685	19SC06SA02-1	Acinetobacter baumannii
GCA_022966395.1	ABFUAY000000000		SAMN26198686	19SC06SA02-2	Acinetobacter baumannii
GCA_040581475.1		5	SAMN26198448	19MO01SH04	Acinetobacter pittii
GCA_040581895.1		3	SAMN26198619	19NY04SH05-1	Aeromonas sp. 19NY04SH05-1
GCA_022967215.1	ABFUBM000000000		SAMN26198486	19MO02SA01-2	Citrobacter freundii
GCA_022967615.1	ABFUCG000000000		SAMN26198492	19MO02SH01-1	Citrobacter freundii
GCA_040591245.1		7	SAMN26198497	19MO02SH04	Citrobacter portucalensis
GCA_040585435.1		5	SAMN26198498	19MO02SH05	Citrobacter portucalensis
GCA_027919895.1		6	SAMN32252640	21OH12SH02A-Citro	Citrobacter sp. 21OH12SH02A-Citro
GCA_032298955.1		7	SAMN37300945	OHT403-4	Enterobacter hormaechei
GCA_040586835.1		3	SAMN26198730	19CA02SA02	Enterococcus faecalis
GCA_030553135.1		3	SAMN36696311	DDG206	Escherichia coli
GCA_030553115.1		4	SAMN36696312	DDG220	Escherichia coli
GCA_032300135.1		9	SAMN37300944	OHT76-1	Escherichia coli
GCA_032463405.1		4	SAMN37300943	OHT45-2A	Klebsiella pneumoniae
GCA_040581435.1		7	SAMN26198727	19MO06SA05	Macrococcoides caseolyticum
GCA_038825855.1		1	SAMN26631322	19MO01SH08	Proteus faecis
GCA_027362595.1		5	SAMN32252641	21OH12SH02B-Prov	Providencia sp. 21OH12SH02B-Prov
GCA_022966515.1	ABFUBF000000000		SAMN26198737	19NY12SH05	Pseudomonas aeruginosa
GCA_022966455.1	ABFUBD000000000		SAMN26198735	19CA11SH04	Pseudomonas aeruginosa
GCA_022966435.1	ABFUBE000000000		SAMN26198736	19MO12SA06	Pseudomonas aeruginosa
GCA_022966415.1	ABFUBC000000000		SAMN26198734	19SC03SA03	Pseudomonas aeruginosa
GCA_022967435.1	ABFUBX000000000		SAMN26198732	19SC02SA06	Pseudomonas aeruginosa
GCA_022967415.1	ABFUBW000000000		SAMN26198733	19PA01SA02	Pseudomonas aeruginosa
GCA_030221725.1	ABLPPW000000000		SAMN26198484	19SC02SH07	Pseudomonas putida
GCA_029771905.1	ABLONB000000000		SAMN26198457	19SC01SA02	Pseudomonas putida
GCA_029771865.1	ABLOMY000000000		SAMN26198432	19MO01SA01	Pseudomonas putida
GCA_029771945.1	ABLONA000000000		SAMN26198701	19NY05SH04	Pseudomonas putida
GCA_029771925.1	ABLOND000000000		SAMN26198468	19SC01SH02-1	Pseudomonas putida
GCA_029771965.1	ABLONC000000000		SAMN26198590	19SC03SH04-1	Pseudomonas putida
GCA_029771885.1	ABLOMZ000000000		SAMN26198554	19SD01SA05	Pseudomonas putida
GCA_029772005.1	ABLONF000000000		SAMN26198522	19KS01SH04	Pseudomonas putida
GCA_029772105.1	ABLONM000000000		SAMN26198490	19MO02SA05-1	Pseudomonas putida
GCA_029772085.1	ABLONJ000000000		SAMN26198450	19MO01SH06-1	Pseudomonas putida
GCA_029772065.1	ABLONL000000000		SAMN26198460	19SC01SA04	Pseudomonas putida
GCA_029772045.1	ABLONI000000000		SAMN26198455	19SC01SA01-1	Pseudomonas putida
GCA_029772025.1	ABLONK000000000		SAMN26198453	19MO01SH08-1	Pseudomonas putida
GCA_022967595.1	ABFUCF000000000		SAMN26198784	19NY07SH06	Salmonella enterica
GCA_022967575.1	ABFUCE000000000		SAMN26198783	19PA09SA02	Salmonella enterica
GCA_022967555.1	ABFUCD000000000		SAMN26198782	19SC02SH04	Salmonella enterica
GCA_038827995.1		3	SAMN26198618	19NY04SH04	Shewanella algae
GCA_022967385.1	ABFUBU000000000		SAMN26198729	19KS12TI02	Staphylococcus aureus
GCA_029768405.1	ABLOJZ000000000		SAMN26198515	19KS01SA01	Stenotrophomonas maltophilia
GCA_029768375.1	ABLOJY000000000		SAMN26198467	19SC01SH01-3	Stenotrophomonas maltophilia
GCA_029768365.1	ABLOJX000000000		SAMN26198476	19SC01SH08	Stenotrophomonas maltophilia
GCA_029768345.1	ABLOJV000000000		SAMN26198474	19SC01SH07	Stenotrophomonas maltophilia
GCA_029768325.1	ABLOJW000000000		SAMN26198444	19MO01SH01-2	Stenotrophomonas maltophilia
GCA_029768305.1	ABLOJU000000000		SAMN26198560	19SD01SH08	Stenotrophomonas maltophilia
GCA_029768285.1	ABLOJT000000000		SAMN26198559	19SD01SH07	Stenotrophomonas maltophilia
GCA_029768265.1	ABLOJS000000000		SAMN26198556	19SD01SH02	Stenotrophomonas maltophilia
GCA_041083325.1	ABTXBW000000000		SAMN43045067	24MO07SH02-V1	Vibrio alginolyticus
GCA_046227175.1	ABWWVI000000000		SAMN45907821	PNUSAV006572	Vibrio cholerae
GCA_022966375.1	ABFUAR000000000		SAMN26198535	19KS02SH01-3	Vibrio cholerae
GCA_022967455.1	ABFUCA000000000		SAMN26198767	19NY03SH07	Vibrio cholerae
GCA_022966935.1	ABFUAS000000000		SAMN26198536	19KS02SH01-4	Vibrio cholerae
GCA_038823575.1		4	SAMN26198752	19CA03SA01	Vibrio metschnikovii
GCA_038821285.1		2	SAMN26198771	19KS04SH03	Vibrio metschnikovii
GCA_038818715.1		3	SAMN26631325	20PA01TI03	Vibrio metschnikovii
GCA_040315585.1		3	SAMN26631324	20CO01TI02	Vibrio metschnikovii
GCA_040588515.1		2	SAMN26631323	19GA03SH07	Vibrio metschnikovii
GCA_046227575.1	ABWWWD000000000		SAMN45907822	PNUSAV006571	Vibrio parahaemolyticus
GCA_041017045.1	ABTUYD000000000		SAMN43006897	24MO04SH02-V1	Vibrio parahaemolyticus
GCA_041017785.1	ABTUZP000000000		SAMN43006243	24MO03SH01-V1	Vibrio parahaemolyticus
GCA_041018605.1	ABTVBE000000000		SAMN43010902	24MO05SH01-V1	Vibrio parahaemolyticus
GCA_022967915.1	ABFUCZ000000000		SAMN26198547	19MO03SH02	Vibrio parahaemolyticus
GCA_022967535.1	ABFUCC000000000		SAMN26198777	19SD04SH02	Vibrio parahaemolyticus
GCA_022967515.1	ABFUCB000000000		SAMN26198773	19GA03SH04	Vibrio parahaemolyticus
GCA_022967495.1	ABFUBZ000000000		SAMN26198766	19NY03SH02	Vibrio parahaemolyticus
GCA_022967475.1	ABFUBY000000000		SAMN26198765	19NY01SH07	Vibrio parahaemolyticus
GCA_022967035.1	ABFUAT000000000		SAMN26198550	19MO03SH05	Vibrio parahaemolyticus
GCA_022967175.1	ABFUBJ000000000		SAMN26198754	19CA03SH03	Vibrio parahaemolyticus
GCA_022967155.1	ABFUBI000000000		SAMN26198744	19MO01SH06	Vibrio parahaemolyticus
GCA_022967135.1	ABFUBG000000000		SAMN26198741	19MO01SH02	Vibrio parahaemolyticus
GCA_022967115.1	ABFUBH000000000		SAMN26198742	19MO01SH03	Vibrio parahaemolyticus
GCA_022966475.1	ABFUBK000000000		SAMN26198758	19SD02SH07	Vibrio parahaemolyticus
GCA_022966955.1	ABFUAU000000000		SAMN26198549	19MO03SH03-2	Vibrio parahaemolyticus
GCA_022966985.1	ABFUAV000000000		SAMN26198540	19KS02SH04-2	Vibrio vulnificus
GCA_040586085.1		2	SAMN26198431	19CA01SA08	bacterium 19CA01SA08
GCA_040590055.1		2	SAMN26198753	19CA03SA04	bacterium 19CA03SA04
GCA_040581675.1		1	SAMN26198652	19CA06SA08-2	bacterium 19CA06SA08-2
GCA_040590815.1		2	SAMN26198728	19GA11TI05	bacterium 19GA11TI05
GCA_040590605.1		4	SAMN26198751	19MO02SH05	bacterium 19MO02SH05
GCA_040584535.1		3	SAMN26198544	19MO03SA05	bacterium 19MO03SA05
GCA_040582695.1		2	SAMN26198609	19MO04SH03	bacterium 19MO04SH03
GCA_040583595.1		1	SAMN26198586	19NY03SH02	bacterium 19NY03SH02
GCA_040582025.1		2	SAMN26198617	19NY04SH03	bacterium 19NY04SH03
GCA_040589265.1		2	SAMN26198762	19PA01SH03	bacterium 19PA01SH03

SRA Data Details

Parameter	Value
Data volume, Gbases	172
Data volume, Mbytes	98467

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Isolates from retail Sea Food

CVM NARMS Retail Seafood Isolates

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