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Accession: PRJNA313213 ID: 313213

Xenopus laevis (African clawed frog)

Xenopus laevis Genome sequencing and assembly

See Genome Information for Xenopus laevis
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295 additional projects are related by organism.
Sequence and annotate the genome of the allotetraploid frog, Xenopus laevis.
AccessionPRJNA313213
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismXenopus laevis[Taxonomy ID: 8355]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus; Xenopus laevis
Publications
  • Session AM et al., "Genome evolution in the allotetraploid frog Xenopus laevis.", Nature, 2016 Oct 20;538(7625):336-343
  • Roe BA et al., "The complete nucleotide sequence of the Xenopus laevis mitochondrial genome.", J Biol Chem, 1985 Aug 15;260(17):9759-74
Grants
  • "A genome assembly for Xenopus laevis" (Grant ID R01 HD065705, NIH Eunice Kennedy Shriver National Institute of Child Health and Human Development)
  • "Systematic improvement of Xenopus gene annotations and reference genomes" (Grant ID R01 HD080708, NIH Eunice Kennedy Shriver National Institute of Child Health and Human Development)
SubmissionRegistration date: 14-Jun-2016
International Xenopus Sequencing Consortium
- UC Berkeley
RelevanceModel Organism
Locus Tag PrefixXELAEV
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)511781
WGS master2
Genomic DNA403729
SRA Experiments9
Protein Sequences47732
Publications
PubMed2
PMC1
Other datasets
BioSample2
Assembly2
Assembly details:
Assembly levelNumber of Assemblies
Chromosome Chromosome
Total
2
2
SRA Data Details
ParameterValue
Data volume, Gbases304
Data volume, Tbytes0.20
Related RefSeq Project
PRJNA338693 : Xenopus laevis strain:J RefSeq Genome sequencing and assembly

Supplemental Content

Related information

LinkOut to external resources

  • GOLD: Gp0235290 [Genomes On Line Database]
    GOLD: Gp0235290
    Genomes On Line Database
  • GOLD: Gp0235290 [Genomes On Line Database]
    GOLD: Gp0235290
    Genomes On Line Database

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