Escherichia coli (ID 341825) - BioProject

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Accession: PRJNA341825 ID: 341825

Escherichia coli

Genomic comparison of mastitis and farm-associated E. coli

See Genome Information for Escherichia coli

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Genomic analysis of Escherichia coli isolated from mastitis and the dairy farm environment to identify mastitis-associated genes

Accession	PRJNA341825
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 29-Sep-2016 Heriot-Watt University
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9299
WGS master	59
Protein Sequences	284086
Other datasets
BioSample	59
Assembly	59

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

1
58
59

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001749705.1	MIXP00000000	SAMN05729292	AF7607	Escherichia coli
GCA_001749675.1	MIXL00000000	SAMN05729328	VL2738	Escherichia coli
GCA_001749665.1	MIXK00000000	SAMN05729327	VL2729-1	Escherichia coli
GCA_001749635.1	MIXH00000000	SAMN05729324	VL2622	Escherichia coli
GCA_001749625.1	MIXD00000000	SAMN05729320	VL2395	Escherichia coli
GCA_001749595.1	MIXO00000000	SAMN05729331	VL2764	Escherichia coli
GCA_001749585.1	MIXN00000000	SAMN05729330	VL2762-4	Escherichia coli
GCA_001749565.1	MIXM00000000	SAMN05729329	VL2762-1	Escherichia coli
GCA_001749535.1	MIXJ00000000	SAMN05729326	VL2638	Escherichia coli
GCA_001749525.1	MIXI00000000	SAMN05729325	VL2632	Escherichia coli
GCA_001749505.1	MIXG00000000	SAMN05729323	VL2619-1	Escherichia coli
GCA_001749465.1	MIXF00000000	SAMN05729322	VL2604	Escherichia coli
GCA_001749455.1	MIXE00000000	SAMN05729321	VL2507-1	Escherichia coli
GCA_001749435.1	MIXC00000000	SAMN05729319	VL128	Escherichia coli
GCA_001749415.1	MIXB00000000	SAMN05729318	VL127	Escherichia coli
GCA_001749375.1	MIWZ00000000	SAMN05729316	VL122	Escherichia coli
GCA_001749385.1	MIXA00000000	SAMN05729317	VL123	Escherichia coli
GCA_001749365.1	MIWY00000000	SAMN05729315	VL119	Escherichia coli
GCA_001749315.1	MIWW00000000	SAMN05729313	VL115	Escherichia coli
GCA_001749325.1	MIWX00000000	SAMN05729314	VL118	Escherichia coli
GCA_001749295.1	MIWT00000000	SAMN05729310	VL49	Escherichia coli
GCA_001749285.1	MIWQ00000000	SAMN05729307	K6636	Escherichia coli
GCA_001749225.1	MIWO00000000	SAMN05729305	K6112	Escherichia coli
GCA_001749235.1	MIWP00000000	SAMN05729306	K6412	Escherichia coli
GCA_001749215.1	MIWV00000000	SAMN05729312	VL68	Escherichia coli
GCA_001749205.1	MIWU00000000	SAMN05729311	VL66a	Escherichia coli
GCA_001749155.1	MIWS00000000	SAMN05729309	VL23	Escherichia coli
GCA_001749145.1	MIWR00000000	SAMN05729308	VL21	Escherichia coli
GCA_001749135.1	MIWK00000000	SAMN05729301	K51	Escherichia coli
GCA_001749125.1	MIWJ00000000	SAMN05729300	K34	Escherichia coli
GCA_001749075.1	MIWH00000000	SAMN05729298	AF7945	Escherichia coli
GCA_001749065.1	MIWN00000000	SAMN05729304	K2328	Escherichia coli
GCA_001749045.1	MIWL00000000	SAMN05729302	K506	Escherichia coli
GCA_001749055.1	MIWM00000000	SAMN05729303	K2026	Escherichia coli
GCA_001748995.1	MIWI00000000	SAMN05729299	ca285-S9	Escherichia coli
GCA_001748965.1	MIVZ00000000	SAMN05729289	AF103	Escherichia coli
GCA_001748985.1	MIWG00000000	SAMN05729297	AF7761	Escherichia coli
GCA_001748975.1	MIVW00000000	SAMN05729286	AF90	Escherichia coli
GCA_001748915.1	MIWF00000000	SAMN05729296	AF7759-1	Escherichia coli
GCA_001748905.1	MIWE00000000	SAMN05729295	AF7709	Escherichia coli
GCA_001748895.1	MIWD00000000	SAMN05729294	AF7658-3	Escherichia coli
GCA_001748885.1	MIWC00000000	SAMN05729293	AF7658-2	Escherichia coli
GCA_001748825.1	MIVX00000000	SAMN05729287	AF94	Escherichia coli
GCA_001748815.1	MIVY00000000	SAMN05729288	AF97	Escherichia coli
GCA_001748835.1	MIWA00000000	SAMN05729290	AF7407	Escherichia coli
GCA_001748805.1	MIWB00000000	SAMN05729291	AF7504-1	Escherichia coli
GCA_001748765.1	MIVV00000000	SAMN05729285	AF85	Escherichia coli
GCA_001748735.1	MIVP00000000	SAMN05729279	VL3001	Escherichia coli
GCA_001748715.1	MIVS00000000	SAMN05729282	VL3013-4	Escherichia coli
GCA_001748695.1	MIVU00000000	SAMN05729284	AF84	Escherichia coli
GCA_001748685.1	MIVT00000000	SAMN05729283	AF83	Escherichia coli
GCA_001748635.1	MIVR00000000	SAMN05729281	VL3013-1	Escherichia coli
GCA_001748625.1	MIVQ00000000	SAMN05729280	VL3009	Escherichia coli
GCA_001748615.1	MIVO00000000	SAMN05729278	VL2984	Escherichia coli
GCA_001748605.1	MIVL00000000	SAMN05729275	VL2810	Escherichia coli
GCA_001748525.1	MIVM00000000	SAMN05729276	VL2832	Escherichia coli
GCA_001748545.1	MIVK00000000	SAMN05729274	VL2790	Escherichia coli
GCA_001748535.1	MIVN00000000	SAMN05729277	VL2871	Escherichia coli
GCA_001748555.1	MIVJ00000000	SAMN05729273	VL2783	Escherichia coli

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Escherichia coli

Genomic comparison of mastitis and farm-associated E. coli

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