Gram Negative Carbapenemase Detection Genome seque... (ID 292904) - BioProject

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Accession: PRJNA292904 ID: 292904

Gram Negative Carbapenemase Detection Genome sequencing and assembly

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This project is a component of the FDA-CDC Antimicrobial Resistance Bank

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24 additional projects are components of the FDA-CDC Antimicrobial Resistance Bank.

Collection of bacterial pathogens that are assembled to challenge assays that detect carbapenemase production representing a range of gram-negative bacteria

Accession	PRJNA292904
Data Type	Genome sequencing and assembly
Scope	Multispecies
Keyword	GMI
Submission	Registration date: 14-Aug-2015 Centers for Disease Control and Prevention
Related Resources	FDA-CDC Antimicrobial Resistance Bank Panels
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	633
WGS master	24
Genomic DNA	165
SRA Experiments	193
Protein Sequences	361878
Other datasets
BioSample	82
Assembly	72
Supplementary data
Base modification	146

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

48
24
72

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_001874945.1	MPBW00000000		SAMN04014886	AR_0045	Acinetobacter baumannii
GCA_001874915.1	MPBZ00000000		SAMN04014876	AR_0035	Acinetobacter baumannii
GCA_001874885.1	MPCA00000000		SAMN04014874	AR_0033	Acinetobacter baumannii
GCA_001874765.1	MPBX00000000		SAMN04014878	AR_0037	Acinetobacter baumannii
GCA_001874685.1	MPBY00000000		SAMN04014877	AR_0036	Acinetobacter baumannii
GCA_002948925.1		1	SAMN04014919	AR_0078	Acinetobacter baumannii
GCA_002947845.1		2	SAMN04014904	AR_0063	Acinetobacter baumannii
GCA_002947415.1		4	SAMN04014897	AR_0056	Acinetobacter baumannii
GCA_003010675.1		2	SAMN04014942	AR_0101	Acinetobacter baumannii
GCA_003010655.1		3	SAMN04014943	AR_0102	Acinetobacter baumannii
GCA_003006035.1		3	SAMN04014929	AR_0088	Acinetobacter baumannii
GCA_002996805.1		2	SAMN04014924	AR_0083	Acinetobacter baumannii
GCA_003573505.1		4	SAMN04014914	-	Enterobacter cloacae
GCA_002192395.1		4	SAMN04014894	AR_0053	Enterobacter cloacae complex sp.
GCA_002201815.1		4	SAMN04014891	AR_0050	Enterobacter cloacae complex sp.
GCA_002055735.1		2	SAMN04014906	AR_0065	Enterobacter cloacae complex sp.
GCA_003053755.1		3	SAMN04014934	AR_0093	Enterobacter cloacae complex sp.
GCA_002947755.1		2	SAMN04014901	AR_0060	Enterobacter cloacae complex sp.
GCA_002954165.1		3	SAMN04014913	AR_0072	Enterobacter cloacae complex sp.
GCA_002180195.1		2	SAMN04014899	AR_0058	Escherichia coli
GCA_002202175.1		4	SAMN04014896	AR_0055	Escherichia coli
GCA_002056635.1		4	SAMN04014945	AR_0104	Escherichia coli
GCA_002056145.1		3	SAMN04014910	AR_0069	Escherichia coli
GCA_002056065.1		3	SAMN04014902	AR_0061	Escherichia coli
GCA_001874845.1	MPCO00000000		SAMN04014889	AR_0048	Escherichia coli
GCA_003571785.1		5	SAMN04014908	-	Escherichia coli
GCA_003571665.1		3	SAMN04014927	-	Escherichia coli
GCA_003571825.1		3	SAMN04014930	-	Escherichia coli
GCA_002996945.1		4	SAMN04014922	AR_0081	Escherichia coli
GCA_003204155.1		4	SAMN04014926	AR_0085	Escherichia coli
GCA_002948655.1		2	SAMN04014918	AR_0077	Escherichia coli
GCA_002948835.2		6	SAMN04014903	AR_0062	Klebsiella aerogenes
GCA_022316155.1	ABFCZD000000000		SAMN04014915	FDA-CDC-AR_0074	Klebsiella aerogenes
GCA_003571705.1		7	SAMN04014950	-	Klebsiella pneumoniae
GCA_003571525.1		6	SAMN04014917	-	Klebsiella pneumoniae
GCA_003571605.1		7	SAMN04014916	-	Klebsiella pneumoniae
GCA_003571645.1		6	SAMN04014938	-	Klebsiella pneumoniae
GCA_003571745.1		6	SAMN04014887	-	Klebsiella pneumoniae
GCA_003204175.1		3	SAMN04014928	AR_0087	Klebsiella pneumoniae
GCA_003073335.1		7	SAMN04014920	AR_0079	Klebsiella pneumoniae
GCA_003010735.1		6	SAMN04014937	AR_0096	Klebsiella pneumoniae subsp. ozaenae
GCA_003010595.1		2	SAMN04014921	AR_0080	Klebsiella pneumoniae
GCA_002948565.1		3	SAMN04014907	AR_0066	Klebsiella pneumoniae
GCA_002180075.1		5	SAMN04014888	AR_0047	Klebsiella pneumoniae
GCA_002202275.1		3	SAMN04014948	AR_0107	Klebsiella pneumoniae
GCA_001874715.1	MPCC00000000		SAMN04014884	AR_0043	Klebsiella pneumoniae
GCA_001874695.1	MPCD00000000		SAMN04014883	AR_0042	Klebsiella pneumoniae
GCA_001874875.1	MPCG00000000		SAMN04014880	AR_0039	Klebsiella pneumoniae
GCA_001875135.1	MPCB00000000		SAMN04014885	AR_0044	Klebsiella pneumoniae
GCA_001875125.1	MPCE00000000		SAMN04014882	AR_0041	Klebsiella pneumoniae
GCA_001875105.1	MPCF00000000		SAMN04014881	AR_0040	Klebsiella pneumoniae
GCA_001875075.1	MPCH00000000		SAMN04014875	AR_0034	Klebsiella pneumoniae
GCA_001922465.1		4	SAMN04014890	-	Klebsiella pneumoniae
GCA_002055855.1		4	SAMN04014909	AR_0068	Klebsiella pneumoniae
GCA_002056475.1		5	SAMN04014939	AR_0098	Klebsiella pneumoniae
GCA_022316255.1	ABFCZF000000000		SAMN04014892	FDA-CDC-AR_0051	Klebsiella pneumoniae subsp. ozaenae
GCA_002055685.1		1	SAMN04014900	AR_0059	Proteus mirabilis
GCA_003204135.1		2	SAMN04014923	AR_0082	Providencia rettgeri
GCA_001874795.1	MPBP00000000		SAMN04014944	AR_0103	Pseudomonas aeruginosa
GCA_001874805.1	MPBS00000000		SAMN04014933	AR_0092	Pseudomonas aeruginosa
GCA_001875215.1	MPBN00000000		SAMN04014949	AR_0108	Pseudomonas aeruginosa
GCA_001875205.1	MPBR00000000		SAMN04014935	AR_0094	Pseudomonas aeruginosa
GCA_001875185.1	MPBU00000000		SAMN04014905	AR_0064	Pseudomonas aeruginosa
GCA_001875165.1	MPBV00000000		SAMN04014895	AR_0054	Pseudomonas aeruginosa
GCA_001874995.1	MPBO00000000		SAMN04014946	AR_0105	Pseudomonas aeruginosa
GCA_001874975.1	MPBQ00000000		SAMN04014941	AR_0100	Pseudomonas aeruginosa
GCA_001874955.1	MPBT00000000		SAMN04014931	AR_0090	Pseudomonas aeruginosa
GCA_003571805.1		2	SAMN04014952	-	Pseudomonas aeruginosa
GCA_003204335.1		1	SAMN04014951	AR_0110	Pseudomonas aeruginosa
GCA_002997005.1		1	SAMN04014936	AR_0095	Pseudomonas aeruginosa
GCA_002996885.1		1	SAMN04014932	AR_0091	Serratia marcescens
GCA_002997125.1		1	SAMN04014940	AR_0099	Serratia marcescens

SRA Data Details

Parameter	Value
Data volume, Gbases	218
Data volume, Tbytes	0.52

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Gram Negative Carbapenemase Detection Genome sequencing and assembly

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