human gut metagenome (ID 327106) - BioProject

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Accession: PRJNA327106 ID: 327106

Simultaneous longitudinal metagenomic sequencing of the mouth, skin, and gut microbiomes of two premature infants during the first month of life

Accession	PRJNA327106
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human gut metagenome[Taxonomy ID: 408170] unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
Publications	Tisza MJ et al., "A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases.", Proc Natl Acad Sci U S A, 2021 Jun 8;118(23)
Grants	"Population genomic analysis of gut microbial colonization in premature infants" (Grant ID R01 AI092531, National Institute of Allergy and Infectious Diseases Extramural Activities) "Analysis of the ICU room environment as a source of microorganisms colonizing the GI tract of premature infants" (Grant ID 2012-10-05, Alfred P Sloan Foundation)
Submission	Registration date: 22-Dec-2016 None
Relevance	Medical

Project Data:

Assembly level

Number of Assemblies

1
10
7
18

Assembly	WGS	Chrs	BioSample	Isolate	Taxonomy
GCA_001931885.1		1	SAMN05509313	0123A_53_520	Citrobacter koseri
GCA_001913915.1	MKXQ00000000		SAMN05509314	0119A_29_11	Clostridioides difficile
GCA_001913905.1	MKXR00000000		SAMN05509317	0522A_28_397	Clostridium perfringens
GCA_001913955.1	MKXS00000000		SAMN05509310	0123W_59_121	Corynebacterium sp. S1S1
GCA_001913985.1	MKXT00000000		SAMN05509318	0522W_59_9	Corynebacterium sp. S5S1
GCA_001913975.1	MKXU00000000		SAMN05509316	0113A_36_17	Enterococcus faecalis
GCA_001913995.1	MKXV00000000		SAMN05509325	0519A_37_406	Enterococcus faecalis
GCA_001914005.1	MKXW00000000		SAMN05509319	0528Y_51_14	Escherichia coli
GCA_001914055.1	MKXX00000000		SAMN05509309	0123Y_40_43	Haemophilus parainfluenzae
GCA_001914065.1	MKXY00000000		SAMN05509308	0125A_56_47	Klebsiella pneumoniae
GCA_001913895.1	MKXP00000000		SAMN05509315	0118A_42_520	Phocaeicola vulgatus
GCA_001914085.1	MKXZ00000000		SAMN05509320	0511A_66_19	Pseudomonas aeruginosa
GCA_001914075.1	MKYA00000000		SAMN05509321	0528Y_59_11	Rothia mucilaginosa
GCA_001914155.1	MKYB00000000		SAMN05509322	0527A_60_106	Serratia marcescens
GCA_001914145.1	MKYD00000000		SAMN05509323	0514Y_32_9	Staphylococcus epidermidis
GCA_001914135.1	MKYC00000000		SAMN05509311	0123W_32_35	Staphylococcus epidermidis
GCA_001914215.1	MKYE00000000		SAMN05509324	0506A_35_952	Streptococcus agalactiae
GCA_001914195.1	MKYF00000000		SAMN05509312	0123W_40_11	Streptococcus mitis

Parameter	Value
Data volume, Gbases	135
Data volume, Mbytes	74996