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Links from Nucleotide

Accession: PRJNA341407 ID: 341407

Bacterial WGS validation panel

The set represents a typical workflow in the public health microbiological laboratory: 10 Enterobacteriaceae isolates, 5 gram-positive cocci, 5 gram-negative non-fermenting species, 9 Mycobacterium tuberculosis, and 5 miscellaneous bacteria. More...
AccessionPRJNA341407
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 31-Aug-2016
California Department of Public Health
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)4884
WGS master34
SRA Experiments171
Protein Sequences133538
Other datasets
BioSample35
Assembly34
Assembly details:
Assembly levelNumber of Assemblies
28
6
34
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001997285.1ScaffoldMTGG00000000SAMN05721782
ATCC 17945
GCA_001999685.1ScaffoldMTGJ00000000SAMN05721785
ATCC 7966
GCA_001997325.1ScaffoldMTGH00000000SAMN05721783
ATCC 25285
GCA_001999385.1ScaffoldMTGK00000000SAMN05721786
ATCC 43734
GCA_001997105.1ScaffoldMTFV00000000SAMN05721771
ATCC 13047
GCA_001999625.1ContigMTFY00000000SAMN05721774
ATCC 29212
GCA_001997075.1ScaffoldMTFU00000000SAMN05721770
ATCC 25922
GCA_001997065.1ScaffoldMTFT00000000SAMN05721769
ATCC 8739
GCA_001997045.1ScaffoldMTFS00000000SAMN05721768
EDL 933
GCA_001997405.1ScaffoldMTGM00000000SAMN05721788
CDPH_C72
GCA_001997355.1ScaffoldMTGI00000000SAMN05721784
ATCC 10211
GCA_001997245.1ContigMTGE00000000SAMN05721780
ATCC 43290
GCA_001997265.1ContigMTGF00000000SAMN05721781
CDPH_C53
GCA_001997915.1ScaffoldMTGZ00000000SAMN05721801
CDPH_C69
GCA_001997905.1ScaffoldMTGY00000000SAMN05721800
CDPH_C68
GCA_001997855.1ScaffoldMTGR00000000SAMN05721793
CDPH_C56
GCA_001997825.1ScaffoldMTGW00000000SAMN05721798
CDPH_C65
GCA_001997765.1ScaffoldMTGV00000000SAMN05721797
CDPH_C61
GCA_001997745.1ScaffoldMTGU00000000SAMN05721796
CDPH_C59
GCA_001997685.1ScaffoldMTGT00000000SAMN05721795
CDPH_C58
GCA_001999445.1ScaffoldMTGX00000000SAMN05721799
CDPH_C67
GCA_001998065.1ScaffoldMTGS00000000SAMN05721794
CDPH_C57
GCA_001997645.1ScaffoldMTGL00000000SAMN05721787
ATCC 49226
GCA_001997195.1ScaffoldMTGC00000000SAMN05721778
ATCC 27853
GCA_001997115.1ScaffoldMTFW00000000SAMN05721772
ATCC 14028
GCA_001997445.1ContigMTGN00000000SAMN05721789
CDPH_C73
GCA_001997485.1ScaffoldMTGO00000000SAMN05721790
CDPH_C74
GCA_001997835.1ScaffoldMTGQ00000000SAMN05721792
CDPH_C76
GCA_001999405.1ScaffoldMTGP00000000SAMN05721791
CDPH_C75
GCA_001997145.1ScaffoldMTFX00000000SAMN05721773
ATCC 25923
GCA_001999745.1ContigMTFZ00000000SAMN05721775
ATCC 12228
GCA_001997165.1ContigMTGA00000000SAMN05721776
ATCC 15305
GCA_001997185.1ScaffoldMTGD00000000SAMN05721779
ATCC 13637
GCA_001999365.1ScaffoldMTGB00000000SAMN05721777
ATCC 6305
SRA Data Details
ParameterValue
Data volume, Gbases117
Data volume, Mbytes75635

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