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Accession: PRJNA285020 ID: 285020

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
Escherichia coli of public health importance
AccessionPRJNA285020
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications
  • Ferdous M et al., "Molecular characterization and phylogeny of Shiga toxin-producing Escherichia coli isolates obtained from two Dutch regions using whole genome sequencing.", Clin Microbiol Infect, 2016 Jul;22(7):642.e1-9
  • Ferdous M et al., "Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing.", J Clin Microbiol, 2015 Nov;53(11):3530-8
SubmissionRegistration date: 15-Sep-2015
University of Groningen, University Medical Center Groningen
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)28879
WGS master160
Protein Sequences825238
Publications
PubMed2
PMC1
Other datasets
BioSample160
Assembly160
Assembly details:
Assembly levelNumber of Assemblies
120
40
160
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001297965.1ScaffoldLFUH00000000SAMN03780448
STEC 915
GCA_001297985.1ScaffoldLFUB00000000SAMN03779023
STEC 623
GCA_001297975.1ScaffoldLDOZ00000000SAMN03736827
STEC 343
GCA_001297995.1ScaffoldLFUA00000000SAMN03779010
STEC 605
GCA_001282065.1ScaffoldLGBQ00000000SAMN03785601
STEC 2820
GCA_001281685.1ScaffoldLGAZ00000000SAMN03779025
STEC 771
GCA_001281725.1ScaffoldLGBJ00000000SAMN03785603
STEC 2868
GCA_001281775.1ScaffoldLGBA00000000SAMN03785593
STEC 989
GCA_001281755.1ScaffoldLGBP00000000SAMN03785609
E09/224
GCA_001281815.1ContigLGBC00000000SAMN03785595
STEC 1109
GCA_001281795.1ScaffoldLGBB00000000SAMN03785594
STEC 994
GCA_001281855.1ScaffoldLGBE00000000SAMN03785597
STEC 2112
GCA_001281885.1ScaffoldLGBF00000000SAMN03785598
STEC 2257
GCA_001281845.1ScaffoldLGBD00000000SAMN03785596
STEC 2075
GCA_001281915.1ScaffoldLGBI00000000SAMN03785602
STEC 2821
GCA_001281905.1ScaffoldLGBG00000000SAMN03785599
STEC 2410
GCA_001281965.1ScaffoldLGBK00000000SAMN03785608
E09/10
GCA_001281925.1ScaffoldLGBH00000000SAMN03785600
STEC 2667
GCA_001281995.1ScaffoldLGBM00000000SAMN03785605
EPEC 393
GCA_001281985.1ScaffoldLGBL00000000SAMN03785604
EPEC 287
GCA_001282025.1ScaffoldLGBN00000000SAMN03785606
EPEC 1572
GCA_001282035.1ScaffoldLGBO00000000SAMN03785607
EPEC 1669
GCA_002286605.1ScaffoldMRWB00000000SAMN06131778
STEC 587-5
GCA_002286535.1ScaffoldMRVY00000000SAMN06131775
STEC 440
GCA_002286565.1ScaffoldMRVZ00000000SAMN06131776
STEC 514-2
GCA_002286515.1ScaffoldMRVV00000000SAMN06131772
STEC 510-5
GCA_002286525.1ScaffoldMRVW00000000SAMN06131773
STEC 625C-4
GCA_002286545.1ScaffoldMRVX00000000SAMN06131774
STEC 621S1
GCA_002286585.1ScaffoldMRWA00000000SAMN06131777
STEC 573-4
GCA_002286465.1ScaffoldMRVR00000000SAMN06131768
STEC 479BS2
GCA_002286445.1ScaffoldMRVS00000000SAMN06131769
STEC 536-9
GCA_002286455.1ScaffoldMRVU00000000SAMN06131771
STEC 476-14
GCA_002286435.1ScaffoldMRVT00000000SAMN06131770
STEC 480-3
GCA_001607955.1ContigLOIY00000000SAMN04002705
STEC 2980
GCA_001607925.1ScaffoldLOIX00000000SAMN04002704
STEC 2962
GCA_001607455.1ScaffoldLPXA00000000SAMN04002677
STEC 2450
GCA_001607435.1ScaffoldLNZL00000000SAMN04002606
STEC 200
GCA_001607445.1ScaffoldLOCX00000000SAMN04002613
STEC 464
GCA_001607415.1ScaffoldLNZK00000000SAMN04002605
STEC 196
GCA_001607385.1ScaffoldLNZJ00000000SAMN04002604
STEC 169
GCA_001607365.1ScaffoldLOJB00000000SAMN04002695
STEC 2839
GCA_001607355.1ScaffoldLOIO00000000SAMN04002692
STEC 2788
GCA_001607335.1ContigLOIP00000000SAMN04002693
STEC 2797
GCA_001607295.1ScaffoldLOHB00000000SAMN04002673
STEC 2359
GCA_001607285.1ContigLPWY00000000SAMN04002674
STEC 2363
GCA_001607265.1ScaffoldLOHC00000000SAMN04002676
STEC 2441
GCA_001607255.1ScaffoldLOHA00000000SAMN04002672
STEC 2346
GCA_001607225.1ScaffoldLOGZ00000000SAMN04002671
STEC 2334
GCA_001607205.1ScaffoldLOGB00000000SAMN04002641
STEC 1236
GCA_001607915.1ContigLPXE00000000SAMN04002703
STEC 2954
GCA_001607895.1ContigLOIW00000000SAMN04002702
STEC 2953
GCA_001607875.1ScaffoldLOIU00000000SAMN04002700
STEC 2920
GCA_001607845.1ScaffoldLOIV00000000SAMN04002701
STEC 2938
GCA_001607835.1ScaffoldLOIT00000000SAMN04002699
STEC 2894.2
GCA_001607815.1ContigLOIS00000000SAMN04002698
STEC 2894.1
GCA_001607795.1ContigLOIR00000000SAMN04002697
STEC 2861
GCA_001607755.1ScaffoldLOJA00000000SAMN04002694
STEC 2826
GCA_001607765.1ScaffoldLOIQ00000000SAMN04002696
STEC 2841
GCA_001607735.1ContigLPXF00000000SAMN04002691
STEC 2770
GCA_001607715.1ScaffoldLOIN00000000SAMN04002690
STEC 2764
GCA_001607685.1ScaffoldLOIL00000000SAMN04002687
STEC 2708
GCA_001607675.1ScaffoldLOIM00000000SAMN04002688
STEC 2743
GCA_001607655.1ContigLPXD00000000SAMN04002689
STEC 2746
GCA_001607635.1ScaffoldLPXC00000000SAMN04002685
STEC 2620
GCA_001607605.1ContigLOIK00000000SAMN04002686
STEC 2633
GCA_001607595.1ContigLOIJ00000000SAMN04002684
STEC 2595
GCA_001607575.1ContigLOII00000000SAMN04002683
STEC 2591
GCA_001607555.1ContigLOIH00000000SAMN04002682
STEC 2573
GCA_001607525.1ContigLOIF00000000SAMN04002680
STEC 2539
GCA_001607515.1ScaffoldLOIG00000000SAMN04002681
STEC 2564
GCA_001607495.1ScaffoldLPXB00000000SAMN04002679
STEC 2505
GCA_001608285.1ScaffoldLNFV00000000SAMN04002603
STEC 168
GCA_001608265.1ScaffoldLNFT00000000SAMN04002602
STEC 66
GCA_001608315.1ContigLNFU00000000SAMN04002601
STEC 29
GCA_001607995.1ScaffoldLOCR00000000SAMN04002607
STEC 299
GCA_001608005.1ScaffoldLOFJ00000000SAMN04002623
STEC 690
GCA_001607975.1ScaffoldLOGX00000000SAMN04002668
STEC 2211
GCA_001608055.1ScaffoldLOCU00000000SAMN04002610
STEC 370
GCA_001608015.1ScaffoldLOCV00000000SAMN04002611
STEC 380
GCA_001608075.1ScaffoldLOFP00000000SAMN04002629
STEC 764
GCA_001608085.1ScaffoldLOFO00000000SAMN04002628
STEC 757
GCA_001608105.1ScaffoldLOGQ00000000SAMN04002657
STEC 1532
GCA_001608125.1ContigLOGP00000000SAMN04002656
STEC 1528
GCA_001608165.1ScaffoldLOGR00000000SAMN04002658
STEC 1585
GCA_001608155.1ScaffoldLOGS00000000SAMN04002659
STEC 1634
GCA_001608205.1ScaffoldLPWZ00000000SAMN04002675
STEC 2419
GCA_001608185.1ContigLOFX00000000SAMN04002637
STEC 1188
GCA_001608245.1ContigLOIZ00000000SAMN04002706
STEC 3031
GCA_001608235.1ScaffoldLOFY00000000SAMN04002638
STEC 1198
GCA_001609295.1ContigLPUM00000000SAMN04002712
STEC 3098
GCA_001609265.1ScaffoldLPUK00000000SAMN04002710
STEC 3087
GCA_001609255.1ScaffoldLPUJ00000000SAMN04002709
STEC 3084
GCA_001609235.1ContigLPUH00000000SAMN04002707
STEC 3039
GCA_001609215.1ContigLPUI00000000SAMN04002708
STEC 3055
GCA_001609315.1ScaffoldLPUN00000000SAMN04002713
STEC 3106
GCA_001609335.1ScaffoldLPUL00000000SAMN04002711
STEC 3094
GCA_001609745.1ScaffoldLODB00000000SAMN04002617
STEC 545
GCA_001609735.1ScaffoldLODC00000000SAMN04002618
STEC 559
GCA_001609795.1ContigLODE00000000SAMN04002620
STEC 565
GCA_001609765.1ScaffoldLODA00000000SAMN04002616
STEC 487
GCA_001609835.1ContigLODG00000000SAMN04002622
STEC 645
GCA_001609815.1ContigLODF00000000SAMN04002621
STEC 627
GCA_001606435.1ContigLOJC00000000SAMN04002661
STEC 2064
GCA_001606375.1ScaffoldLOFK00000000SAMN04002624
STEC 691
GCA_001606365.1ScaffoldLOFM00000000SAMN04002626
STEC 709
GCA_001606385.1ScaffoldLOGW00000000SAMN04002667
STEC 2193
GCA_001606355.1ScaffoldLOFN00000000SAMN04002627
STEC 731
GCA_001606595.1ScaffoldLOGC00000000SAMN04002642
STEC 1255
GCA_001606545.1ContigLOGE00000000SAMN04002644
STEC 1284
GCA_001606555.1ContigLOGD00000000SAMN04002643
STEC 1270
GCA_001606525.1ScaffoldLOGT00000000SAMN04002660
STEC 1686
GCA_001606515.1ScaffoldLOGL00000000SAMN04002651
STEC 1465
GCA_001606475.1ScaffoldLOGM00000000SAMN04002652
STEC 1473
GCA_001606445.1ScaffoldLOGK00000000SAMN04002650
STEC 1442
GCA_001606465.1ScaffoldLOGJ00000000SAMN04002649
STEC 1375
GCA_001606675.1ContigLOGV00000000SAMN04002666
STEC 2174
GCA_001606635.1ContigLOGO00000000SAMN04002655
STEC 1513
GCA_001606705.1ScaffoldLOFQ00000000SAMN04002630
STEC 793
GCA_001606695.1ScaffoldLOFL00000000SAMN04002625
STEC 707
GCA_001606615.1ScaffoldLOGN00000000SAMN04002653
STEC 1500
GCA_001606625.1ScaffoldLPWV00000000SAMN04002654
STEC 1506
GCA_001606865.1ContigLOFV00000000SAMN04002635
STEC 1161
GCA_001606855.1ScaffoldLOFW00000000SAMN04002636
STEC 1178
GCA_001606835.1ScaffoldLOGH00000000SAMN04002647
STEC 1303
GCA_001606815.1ScaffoldLOGF00000000SAMN04002645
STEC 1293
GCA_001606785.1ScaffoldLOGG00000000SAMN04002646
STEC 1299
GCA_001606775.1ContigLOCT00000000SAMN04002609
STEC 329
GCA_001606755.1ScaffoldLOCS00000000SAMN04002608
STEC 309
GCA_001606725.1ScaffoldLOCW00000000SAMN04002612
STEC 384
GCA_001607185.1ScaffoldLOGA00000000SAMN04002640
STEC 1225
GCA_001607175.1ContigLOFZ00000000SAMN04002639
STEC 1201
GCA_001607155.1ScaffoldLOGI00000000SAMN04002648
STEC 1363
GCA_001607125.1ContigLOGY00000000SAMN04002669
STEC 2236
GCA_001607105.1ScaffoldLPWX00000000SAMN04002670
STEC 2270
GCA_001607095.1ScaffoldLOFU00000000SAMN04002634
STEC 1117
GCA_001607075.1ScaffoldLOFS00000000SAMN04002632
STEC 931
GCA_001607045.1ContigLOFT00000000SAMN04002633
STEC 940
GCA_001607015.1ScaffoldLOCY00000000SAMN04002614
STEC 477
GCA_001607025.1ScaffoldLOCZ00000000SAMN04002615
STEC 479
GCA_001606975.1ScaffoldLOJE00000000SAMN04002664
STEC 2110.3
GCA_001606985.1ScaffoldLOGU00000000SAMN04002665
STEC 2144
GCA_001606955.1ContigLOJD00000000SAMN04002662
STEC 2074
GCA_001606935.1ScaffoldLPWW00000000SAMN04002663
STEC 2110.1
GCA_001606915.1ScaffoldLOIE00000000SAMN04002678
STEC 2499
GCA_001606895.1ScaffoldLOFR00000000SAMN04002631
STEC 886
GCA_001609855.1ScaffoldLODD00000000SAMN04002619
STEC 563
GCA_001742725.1ScaffoldLZEH00000000SAMN05200898
EPEC 2827
GCA_001742705.1ScaffoldLZEG00000000SAMN05200897
EPEC 2081
GCA_001742665.1ScaffoldLZEF00000000SAMN05200896
EPEC 2272
GCA_001742655.1ScaffoldLZEE00000000SAMN05200895
EPEC 2252
GCA_001742645.1ContigLZED00000000SAMN05200894
EPEC 1554
GCA_001742625.1ScaffoldLZEC00000000SAMN05200893
EPEC 1150
GCA_001742565.1ContigLZEA00000000SAMN05200891
EPEC 2669
GCA_001742575.1ScaffoldLZEB00000000SAMN05200892
EPEC 3029
GCA_001742555.1ScaffoldLZDZ00000000SAMN05200890
EPEC 2646
GCA_001742545.1ScaffoldLZDY00000000SAMN05200889
EPEC 1316
GCA_001742495.1ContigLZDU00000000SAMN05200885
EPEC 400
GCA_001742465.1ScaffoldLZDV00000000SAMN05200886
EPEC 536
GCA_001742485.1ScaffoldLZDW00000000SAMN05200887
EPEC 631
GCA_001742475.1ContigLZDX00000000SAMN05200888
EPEC 720

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