Clostridioides difficile (ID 340238) - BioProject

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Accession: PRJNA340238 ID: 340238

Clostridioides difficile

Genome sequencing and assembly of clinical Clostridium difficile isolates from children

See Genome Information for Clostridioides difficile

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Clinical C. difficile isolates previously collected from children with C. difficile infection at a single center and previously characterized by restriction endonuclease analysis underwent whole genome sequencing. More...

Accession	PRJNA340238
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Clostridioides difficile[Taxonomy ID: 1496] Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile
Grants	"Molecular epidemiologic survey and risk factor assessment of Clostridium difficile infections in children" (Grant ID 11854, Thrasher Research Fund)
Submission	Registration date: 14-Sep-2017 Ann & Robert H. Lurie Children's Hospital of Chicago
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	35416
WGS master	134
Protein Sequences	495271
Other datasets
BioSample	134
Assembly	134

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

134
134

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002301895.1	MOQU00000000	SAMN05710887	6597-AL/ST58	Clostridioides difficile
GCA_002302205.1	MPFB00000000	SAMN05710934	7464-Y/ST110	Clostridioides difficile
GCA_002302305.1	MPEN00000000	SAMN05710916	6633-DH/ST42	Clostridioides difficile
GCA_002302285.1	MPEM00000000	SAMN05710915	6632-NonSp/ST3	Clostridioides difficile
GCA_002303225.1	MPJN00000000	SAMN05710890	6603-Y/ST2	Clostridioides difficile
GCA_002303525.1	MOTH00000000	SAMN05710904	6621-NonSp/ST10	Clostridioides difficile
GCA_002303575.1	MOTJ00000000	SAMN05710906	6623-NonSp/ST54	Clostridioides difficile
GCA_002303715.1	MOTO00000000	SAMN05710913	6630-DH/ST42	Clostridioides difficile
GCA_002303605.1	MPJR00000000	SAMN05710908	6625-Y/ST2	Clostridioides difficile
GCA_002303465.1	MOTE00000000	SAMN05710901	6618-NonSp/ST53	Clostridioides difficile
GCA_002303695.1	MOTN00000000	SAMN05710912	6629-NonSp/novelST	Clostridioides difficile
GCA_002303655.1	MOTL00000000	SAMN05710910	6627-AL/ST58	Clostridioides difficile
GCA_002303675.1	MOTM00000000	SAMN05710911	6628-AL/ST58	Clostridioides difficile
GCA_002302985.1	MPGG00000000	SAMN05710952	7487-DH/ST42	Clostridioides difficile
GCA_002303545.1	MOTI00000000	SAMN05710905	6622-CF/ST37	Clostridioides difficile
GCA_002303635.1	MPJS00000000	SAMN05710909	6626-Y/ST110	Clostridioides difficile
GCA_002303585.1	MOTK00000000	SAMN05710907	6624-Y/ST13	Clostridioides difficile
GCA_002303485.1	MOTF00000000	SAMN05710902	6619-CF/ST37	Clostridioides difficile
GCA_002303415.1	MOTD00000000	SAMN05710899	6616-NonSp/novelST	Clostridioides difficile
GCA_002303365.1	MOSZ00000000	SAMN05710894	6610-N/ST10	Clostridioides difficile
GCA_002303505.1	MOTG00000000	SAMN05710903	6620-N/ST10	Clostridioides difficile
GCA_002303425.1	MOTC00000000	SAMN05710898	6615-NonSp/ST11	Clostridioides difficile
GCA_002303445.1	MPJQ00000000	SAMN05710900	6617-A/ST43	Clostridioides difficile
GCA_002303155.1	MPFV00000000	SAMN05710961	7499-CF/ST37	Clostridioides difficile
GCA_002303385.1	MOTB00000000	SAMN05710896	6613-NonSp/ST3	Clostridioides difficile
GCA_002303215.1	MPFY00000000	SAMN05710964	7505-Y/ST2	Clostridioides difficile
GCA_002303345.1	MOSY00000000	SAMN05710893	6609-DH/ST42	Clostridioides difficile
GCA_002303305.1	MPJO00000000	SAMN05710891	6606-BK/ST11	Clostridioides difficile
GCA_002303325.1	MOSX00000000	SAMN05710892	6607-DH/ST42	Clostridioides difficile
GCA_002303265.1	MPJP00000000	SAMN05710897	6614-AL/ST34	Clostridioides difficile
GCA_002303245.1	MOTA00000000	SAMN05710895	6612-DH/ST28	Clostridioides difficile
GCA_002303105.1	MPFT00000000	SAMN05710959	7497-NonSp/novelST	Clostridioides difficile
GCA_002303075.1	MPFS00000000	SAMN05710958	7496-D/ST9	Clostridioides difficile
GCA_002303185.1	MPFX00000000	SAMN05710963	7503-Y/ST2	Clostridioides difficile
GCA_002303165.1	MPFW00000000	SAMN05710962	7501-BI/ST1	Clostridioides difficile
GCA_002303085.1	MPFR00000000	SAMN05710957	7494-E/ST6	Clostridioides difficile
GCA_002303125.1	MPFU00000000	SAMN05710960	7498-M/ST15	Clostridioides difficile
GCA_002303025.1	MPFP00000000	SAMN05710955	7491-DH/ST42	Clostridioides difficile
GCA_002303045.1	MPFQ00000000	SAMN05710956	7492-CF/ST37	Clostridioides difficile
GCA_002303005.1	MPGO00000000	SAMN05710954	7490-G/ST8	Clostridioides difficile
GCA_002302975.1	MPGN00000000	SAMN05710953	7488-NonSp/ST103	Clostridioides difficile
GCA_002302065.1	MPEU00000000	SAMN05710923	7452-Y/ST110	Clostridioides difficile
GCA_002302905.1	MPFM00000000	SAMN05710948	7481-NonSp/ST59	Clostridioides difficile
GCA_002302945.1	MPFO00000000	SAMN05710950	7483-CF/ST37	Clostridioides difficile
GCA_002302885.1	MPFL00000000	SAMN05710947	7480-M/ST15	Clostridioides difficile
GCA_002302835.1	MPFJ00000000	SAMN05710944	7477-A/ST43	Clostridioides difficile
GCA_002302845.1	MPGC00000000	SAMN05710945	7478-NonSp/novelST	Clostridioides difficile
GCA_002302925.1	MPFN00000000	SAMN05710949	7482-DH/ST42	Clostridioides difficile
GCA_002302865.1	MPFK00000000	SAMN05710946	7479-NonSp/ST3	Clostridioides difficile
GCA_002302745.1	MPFG00000000	SAMN05710941	7473-DH/ST42	Clostridioides difficile
GCA_002302795.1	MPFH00000000	SAMN05710942	7474-AL/ST58	Clostridioides difficile
GCA_002302755.1	MPEL00000000	SAMN05710938	7468-NonSp/ST97	Clostridioides difficile
GCA_002302805.1	MPFI00000000	SAMN05710943	7476-Y/ST2	Clostridioides difficile
GCA_002302765.1	MPFE00000000	SAMN05710939	7471-BI/ST1	Clostridioides difficile
GCA_002302685.1	MPEZ00000000	SAMN05710931	7461-BK/ST11	Clostridioides difficile
GCA_002302725.1	MPFF00000000	SAMN05710940	7472-Y/ST2	Clostridioides difficile
GCA_002302585.1	MPGB00000000	SAMN05710928	7457-NonSp/novelST	Clostridioides difficile
GCA_002302265.1	MPFZ00000000	SAMN05710914	6631-DH/ST42	Clostridioides difficile
GCA_002302465.1	MPEO00000000	SAMN05710917	6634-DH/ST42	Clostridioides difficile
GCA_002302225.1	MPFC00000000	SAMN05710935	7465-DH/ST42	Clostridioides difficile
GCA_002302245.1	MPEK00000000	SAMN05710937	7467-DH/ST42	Clostridioides difficile
GCA_002302125.1	MPEW00000000	SAMN05710927	7456-DH/ST42	Clostridioides difficile
GCA_002304245.1	MPFD00000000	SAMN05710936	7466-DH/ST42	Clostridioides difficile
GCA_002304265.1	MPGD00000000	SAMN05710951	7486-A/ST43	Clostridioides difficile
GCA_002304255.1	MPGF00000000	SAMN05710932	7462-DH/ST42	Clostridioides difficile
GCA_002304585.1	MOQZ00000000	SAMN05710882	6592-G/ST8	Clostridioides difficile
GCA_002304575.1	MOPR00000000	SAMN05710855	5504-L/ST55	Clostridioides difficile
GCA_002302145.1	MPEX00000000	SAMN05710929	7458-N/ST10	Clostridioides difficile
GCA_002301955.1	MPEQ00000000	SAMN05710919	6636-R/ST48	Clostridioides difficile
GCA_002302185.1	MPFA00000000	SAMN05710933	7463-E/ST6	Clostridioides difficile
GCA_002302165.1	MPEY00000000	SAMN05710930	7459-G/ST8	Clostridioides difficile
GCA_002302085.1	MPGE00000000	SAMN05710925	7454-NonSp/ST54	Clostridioides difficile
GCA_002302115.1	MPGA00000000	SAMN05710926	7455-A/ST43	Clostridioides difficile
GCA_002301845.1	MOQX00000000	SAMN05710884	6594-G/ST8	Clostridioides difficile
GCA_002301985.1	MOQY00000000	SAMN05710883	6593-Y/ST110	Clostridioides difficile
GCA_002302075.1	MPEV00000000	SAMN05710924	7453-Y/ST2	Clostridioides difficile
GCA_002302055.1	MPET00000000	SAMN05710922	7451-NonSp/ST2	Clostridioides difficile
GCA_002302005.1	MPES00000000	SAMN05710921	7450-DH/ST42	Clostridioides difficile
GCA_002301975.1	MPER00000000	SAMN05710920	6637-AL/ST58	Clostridioides difficile
GCA_002301945.1	MPEP00000000	SAMN05710918	6635-BI/ST1	Clostridioides difficile
GCA_002301905.1	MOQT00000000	SAMN05710888	6599-NonSp/ST103	Clostridioides difficile
GCA_002301925.1	MOQS00000000	SAMN05710889	6600-G/ST8	Clostridioides difficile
GCA_002301855.1	MOQV00000000	SAMN05710886	6596-D/ST9	Clostridioides difficile
GCA_002301835.1	MOQW00000000	SAMN05710885	6595-AL/ST58	Clostridioides difficile
GCA_002301765.1	MOQP00000000	SAMN05710879	6585-DH/ST42	Clostridioides difficile
GCA_002301785.1	MOQQ00000000	SAMN05710880	6588-G/ST8	Clostridioides difficile
GCA_002301805.1	MOQR00000000	SAMN05710881	6589-DH/ST42	Clostridioides difficile
GCA_002301705.1	MOPV00000000	SAMN05710859	5539-Y/ST2	Clostridioides difficile
GCA_002301735.1	MOQO00000000	SAMN05710878	6584-AQ/ST26	Clostridioides difficile
GCA_002301715.1	MOQN00000000	SAMN05710877	6583-AH/ST67	Clostridioides difficile
GCA_002301695.1	MOPU00000000	SAMN05710858	5538-BK/ST11	Clostridioides difficile
GCA_002301675.1	MOQM00000000	SAMN05710876	5624-DH/ST42	Clostridioides difficile
GCA_002301655.1	MOQL00000000	SAMN05710875	5616-DH/ST42	Clostridioides difficile
GCA_002301635.1	MOQK00000000	SAMN05710874	5573-CF/ST37	Clostridioides difficile
GCA_002301615.1	MOQI00000000	SAMN05710872	5558-AH/ST67	Clostridioides difficile
GCA_002301595.1	MOQF00000000	SAMN05710869	5553-L/ST55	Clostridioides difficile
GCA_002301575.1	MOQE00000000	SAMN05710868	5552-DH/ST42	Clostridioides difficile
GCA_002301555.1	MOQD00000000	SAMN05710867	5551-CF/ST37	Clostridioides difficile
GCA_002301495.1	MOQA00000000	SAMN05710864	5548-Y/ST2	Clostridioides difficile
GCA_002301525.1	MOQC00000000	SAMN05710866	5550-AH/ST67	Clostridioides difficile
GCA_002301505.1	MOQB00000000	SAMN05710865	5549-NonSp/ST21	Clostridioides difficile
GCA_002301465.1	MOPY00000000	SAMN05710862	5544-AH/ST67	Clostridioides difficile
GCA_002301455.1	MOPX00000000	SAMN05710861	5542-Y/ST2	Clostridioides difficile
GCA_002301435.1	MOPW00000000	SAMN05710860	5541-CF/ST37	Clostridioides difficile
GCA_002301395.1	MOPS00000000	SAMN05710856	5505-Y/ST2	Clostridioides difficile
GCA_002301405.1	MOPT00000000	SAMN05710857	5537-D/ST9	Clostridioides difficile
GCA_002301375.1	MOQJ00000000	SAMN05710873	5559-DH/ST42	Clostridioides difficile
GCA_002301335.1	MOQH00000000	SAMN05710871	5557-DH/ST42	Clostridioides difficile
GCA_002301325.1	MOQG00000000	SAMN05710870	5555-DH/ST42	Clostridioides difficile
GCA_002301305.1	MOPZ00000000	SAMN05710863	5547-DH/ST42	Clostridioides difficile
GCA_002301245.1	MOPP00000000	SAMN05710852	5500-DH/ST42	Clostridioides difficile
GCA_002301265.1	MOPQ00000000	SAMN05710854	5503-Y/ST2	Clostridioides difficile
GCA_002301255.1	MOPO00000000	SAMN05710853	5502-NonSp/novelST	Clostridioides difficile
GCA_002301235.1	MOPN00000000	SAMN05710851	5497-Y/ST2	Clostridioides difficile
GCA_002301165.1	MOPL00000000	SAMN05710849	5495-AF/ST41	Clostridioides difficile
GCA_002301105.1	MOPI00000000	SAMN05710846	5492-M/ST15	Clostridioides difficile
GCA_002301075.1	MOPF00000000	SAMN05710843	5489-M/ST15	Clostridioides difficile
GCA_002301185.1	MOPM00000000	SAMN05710850	5496-Y/ST110	Clostridioides difficile
GCA_002300925.1	MNBS00000000	SAMN05710836	5481-DH/ST42	Clostridioides difficile
GCA_002301125.1	MOPJ00000000	SAMN05710847	5493-DH/ST42	Clostridioides difficile
GCA_002301145.1	MOPK00000000	SAMN05710848	5494-Y/ST110	Clostridioides difficile
GCA_002301085.1	MOPG00000000	SAMN05710844	5490-CF/ST37	Clostridioides difficile
GCA_002301035.1	MOPD00000000	SAMN05710841	5487-NonSp/novelST	Clostridioides difficile
GCA_002301025.1	MOPE00000000	SAMN05710842	5488-DH/ST42	Clostridioides difficile
GCA_002301095.1	MOPH00000000	SAMN05710845	5491-N/ST10	Clostridioides difficile
GCA_002300995.1	MNBV00000000	SAMN05710839	5485-Y/ST2	Clostridioides difficile
GCA_002301015.1	MOPC00000000	SAMN05710840	5486-Y/ST2	Clostridioides difficile
GCA_002300935.1	MNBP00000000	SAMN05710833	5478-N/ST10	Clostridioides difficile
GCA_002300955.1	MNBU00000000	SAMN05710838	5483-L/ST55	Clostridioides difficile
GCA_002300915.1	MNBT00000000	SAMN05710837	5482-L/ST55	Clostridioides difficile
GCA_002300865.1	MNBR00000000	SAMN05710835	5480-E/ST6	Clostridioides difficile
GCA_002300835.1	MNBA00000000	SAMN05710831	5475-DH/ST42	Clostridioides difficile
GCA_002300855.1	MNBQ00000000	SAMN05710834	5479-NonSp/ST229	Clostridioides difficile
GCA_002300845.1	MNBB00000000	SAMN05710832	5477-AQ/ST26	Clostridioides difficile

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Clostridioides difficile

Genome sequencing and assembly of clinical Clostridium difficile isolates from children

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