Clostridioides difficile (ID 340238) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Nucleotide

Accession: PRJNA340238 ID: 340238

Clostridioides difficile

Genome sequencing and assembly of clinical Clostridium difficile isolates from children

See Genome Information for Clostridioides difficile

Navigate Across

744 additional projects are related by organism.

Clinical C. difficile isolates previously collected from children with C. difficile infection at a single center and previously characterized by restriction endonuclease analysis underwent whole genome sequencing. More...

Accession	PRJNA340238
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Clostridioides difficile[Taxonomy ID: 1496] Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile
Grants	"Molecular epidemiologic survey and risk factor assessment of Clostridium difficile infections in children" (Grant ID 11854, Thrasher Research Fund)
Submission	Registration date: 14-Sep-2017 Ann & Robert H. Lurie Children's Hospital of Chicago
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	35416
WGS master	134
Protein Sequences	495271
Other datasets
BioSample	134
Assembly	134

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

134
134

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002301895.1	MOQU00000000	SAMN05710887	6597-AL/ST58	Clostridioides difficile
GCA_002302305.1	MPEN00000000	SAMN05710916	6633-DH/ST42	Clostridioides difficile
GCA_002302205.1	MPFB00000000	SAMN05710934	7464-Y/ST110	Clostridioides difficile
GCA_002302285.1	MPEM00000000	SAMN05710915	6632-NonSp/ST3	Clostridioides difficile
GCA_002303225.1	MPJN00000000	SAMN05710890	6603-Y/ST2	Clostridioides difficile
GCA_002303525.1	MOTH00000000	SAMN05710904	6621-NonSp/ST10	Clostridioides difficile
GCA_002303575.1	MOTJ00000000	SAMN05710906	6623-NonSp/ST54	Clostridioides difficile
GCA_002303715.1	MOTO00000000	SAMN05710913	6630-DH/ST42	Clostridioides difficile
GCA_002303605.1	MPJR00000000	SAMN05710908	6625-Y/ST2	Clostridioides difficile
GCA_002303465.1	MOTE00000000	SAMN05710901	6618-NonSp/ST53	Clostridioides difficile
GCA_002303695.1	MOTN00000000	SAMN05710912	6629-NonSp/novelST	Clostridioides difficile
GCA_002303655.1	MOTL00000000	SAMN05710910	6627-AL/ST58	Clostridioides difficile
GCA_002303675.1	MOTM00000000	SAMN05710911	6628-AL/ST58	Clostridioides difficile
GCA_002302985.1	MPGG00000000	SAMN05710952	7487-DH/ST42	Clostridioides difficile
GCA_002303545.1	MOTI00000000	SAMN05710905	6622-CF/ST37	Clostridioides difficile
GCA_002303635.1	MPJS00000000	SAMN05710909	6626-Y/ST110	Clostridioides difficile
GCA_002303585.1	MOTK00000000	SAMN05710907	6624-Y/ST13	Clostridioides difficile
GCA_002303485.1	MOTF00000000	SAMN05710902	6619-CF/ST37	Clostridioides difficile
GCA_002303415.1	MOTD00000000	SAMN05710899	6616-NonSp/novelST	Clostridioides difficile
GCA_002303365.1	MOSZ00000000	SAMN05710894	6610-N/ST10	Clostridioides difficile
GCA_002303505.1	MOTG00000000	SAMN05710903	6620-N/ST10	Clostridioides difficile
GCA_002303425.1	MOTC00000000	SAMN05710898	6615-NonSp/ST11	Clostridioides difficile
GCA_002303445.1	MPJQ00000000	SAMN05710900	6617-A/ST43	Clostridioides difficile
GCA_002303155.1	MPFV00000000	SAMN05710961	7499-CF/ST37	Clostridioides difficile
GCA_002303385.1	MOTB00000000	SAMN05710896	6613-NonSp/ST3	Clostridioides difficile
GCA_002303215.1	MPFY00000000	SAMN05710964	7505-Y/ST2	Clostridioides difficile
GCA_002303345.1	MOSY00000000	SAMN05710893	6609-DH/ST42	Clostridioides difficile
GCA_002303305.1	MPJO00000000	SAMN05710891	6606-BK/ST11	Clostridioides difficile
GCA_002303325.1	MOSX00000000	SAMN05710892	6607-DH/ST42	Clostridioides difficile
GCA_002303265.1	MPJP00000000	SAMN05710897	6614-AL/ST34	Clostridioides difficile
GCA_002303245.1	MOTA00000000	SAMN05710895	6612-DH/ST28	Clostridioides difficile
GCA_002303105.1	MPFT00000000	SAMN05710959	7497-NonSp/novelST	Clostridioides difficile
GCA_002303075.1	MPFS00000000	SAMN05710958	7496-D/ST9	Clostridioides difficile
GCA_002303185.1	MPFX00000000	SAMN05710963	7503-Y/ST2	Clostridioides difficile
GCA_002303165.1	MPFW00000000	SAMN05710962	7501-BI/ST1	Clostridioides difficile
GCA_002303085.1	MPFR00000000	SAMN05710957	7494-E/ST6	Clostridioides difficile
GCA_002303125.1	MPFU00000000	SAMN05710960	7498-M/ST15	Clostridioides difficile
GCA_002303025.1	MPFP00000000	SAMN05710955	7491-DH/ST42	Clostridioides difficile
GCA_002303045.1	MPFQ00000000	SAMN05710956	7492-CF/ST37	Clostridioides difficile
GCA_002303005.1	MPGO00000000	SAMN05710954	7490-G/ST8	Clostridioides difficile
GCA_002302975.1	MPGN00000000	SAMN05710953	7488-NonSp/ST103	Clostridioides difficile
GCA_002302065.1	MPEU00000000	SAMN05710923	7452-Y/ST110	Clostridioides difficile
GCA_002302905.1	MPFM00000000	SAMN05710948	7481-NonSp/ST59	Clostridioides difficile
GCA_002302945.1	MPFO00000000	SAMN05710950	7483-CF/ST37	Clostridioides difficile
GCA_002302885.1	MPFL00000000	SAMN05710947	7480-M/ST15	Clostridioides difficile
GCA_002302835.1	MPFJ00000000	SAMN05710944	7477-A/ST43	Clostridioides difficile
GCA_002302845.1	MPGC00000000	SAMN05710945	7478-NonSp/novelST	Clostridioides difficile
GCA_002302925.1	MPFN00000000	SAMN05710949	7482-DH/ST42	Clostridioides difficile
GCA_002302865.1	MPFK00000000	SAMN05710946	7479-NonSp/ST3	Clostridioides difficile
GCA_002302745.1	MPFG00000000	SAMN05710941	7473-DH/ST42	Clostridioides difficile
GCA_002302795.1	MPFH00000000	SAMN05710942	7474-AL/ST58	Clostridioides difficile
GCA_002302755.1	MPEL00000000	SAMN05710938	7468-NonSp/ST97	Clostridioides difficile
GCA_002302805.1	MPFI00000000	SAMN05710943	7476-Y/ST2	Clostridioides difficile
GCA_002302765.1	MPFE00000000	SAMN05710939	7471-BI/ST1	Clostridioides difficile
GCA_002302685.1	MPEZ00000000	SAMN05710931	7461-BK/ST11	Clostridioides difficile
GCA_002302725.1	MPFF00000000	SAMN05710940	7472-Y/ST2	Clostridioides difficile
GCA_002302585.1	MPGB00000000	SAMN05710928	7457-NonSp/novelST	Clostridioides difficile
GCA_002302265.1	MPFZ00000000	SAMN05710914	6631-DH/ST42	Clostridioides difficile
GCA_002302465.1	MPEO00000000	SAMN05710917	6634-DH/ST42	Clostridioides difficile
GCA_002302225.1	MPFC00000000	SAMN05710935	7465-DH/ST42	Clostridioides difficile
GCA_002302245.1	MPEK00000000	SAMN05710937	7467-DH/ST42	Clostridioides difficile
GCA_002302125.1	MPEW00000000	SAMN05710927	7456-DH/ST42	Clostridioides difficile
GCA_002302145.1	MPEX00000000	SAMN05710929	7458-N/ST10	Clostridioides difficile
GCA_002301955.1	MPEQ00000000	SAMN05710919	6636-R/ST48	Clostridioides difficile
GCA_002302185.1	MPFA00000000	SAMN05710933	7463-E/ST6	Clostridioides difficile
GCA_002302165.1	MPEY00000000	SAMN05710930	7459-G/ST8	Clostridioides difficile
GCA_002302085.1	MPGE00000000	SAMN05710925	7454-NonSp/ST54	Clostridioides difficile
GCA_002302115.1	MPGA00000000	SAMN05710926	7455-A/ST43	Clostridioides difficile
GCA_002301845.1	MOQX00000000	SAMN05710884	6594-G/ST8	Clostridioides difficile
GCA_002301985.1	MOQY00000000	SAMN05710883	6593-Y/ST110	Clostridioides difficile
GCA_002302075.1	MPEV00000000	SAMN05710924	7453-Y/ST2	Clostridioides difficile
GCA_002302055.1	MPET00000000	SAMN05710922	7451-NonSp/ST2	Clostridioides difficile
GCA_002302005.1	MPES00000000	SAMN05710921	7450-DH/ST42	Clostridioides difficile
GCA_002301975.1	MPER00000000	SAMN05710920	6637-AL/ST58	Clostridioides difficile
GCA_002301945.1	MPEP00000000	SAMN05710918	6635-BI/ST1	Clostridioides difficile
GCA_002301905.1	MOQT00000000	SAMN05710888	6599-NonSp/ST103	Clostridioides difficile
GCA_002301925.1	MOQS00000000	SAMN05710889	6600-G/ST8	Clostridioides difficile
GCA_002301855.1	MOQV00000000	SAMN05710886	6596-D/ST9	Clostridioides difficile
GCA_002301835.1	MOQW00000000	SAMN05710885	6595-AL/ST58	Clostridioides difficile
GCA_002301765.1	MOQP00000000	SAMN05710879	6585-DH/ST42	Clostridioides difficile
GCA_002301785.1	MOQQ00000000	SAMN05710880	6588-G/ST8	Clostridioides difficile
GCA_002301805.1	MOQR00000000	SAMN05710881	6589-DH/ST42	Clostridioides difficile
GCA_002301705.1	MOPV00000000	SAMN05710859	5539-Y/ST2	Clostridioides difficile
GCA_002301735.1	MOQO00000000	SAMN05710878	6584-AQ/ST26	Clostridioides difficile
GCA_002301715.1	MOQN00000000	SAMN05710877	6583-AH/ST67	Clostridioides difficile
GCA_002301695.1	MOPU00000000	SAMN05710858	5538-BK/ST11	Clostridioides difficile
GCA_002301675.1	MOQM00000000	SAMN05710876	5624-DH/ST42	Clostridioides difficile
GCA_002301655.1	MOQL00000000	SAMN05710875	5616-DH/ST42	Clostridioides difficile
GCA_002301635.1	MOQK00000000	SAMN05710874	5573-CF/ST37	Clostridioides difficile
GCA_002301615.1	MOQI00000000	SAMN05710872	5558-AH/ST67	Clostridioides difficile
GCA_002301595.1	MOQF00000000	SAMN05710869	5553-L/ST55	Clostridioides difficile
GCA_002301575.1	MOQE00000000	SAMN05710868	5552-DH/ST42	Clostridioides difficile
GCA_002301555.1	MOQD00000000	SAMN05710867	5551-CF/ST37	Clostridioides difficile
GCA_002301495.1	MOQA00000000	SAMN05710864	5548-Y/ST2	Clostridioides difficile
GCA_002301525.1	MOQC00000000	SAMN05710866	5550-AH/ST67	Clostridioides difficile
GCA_002301505.1	MOQB00000000	SAMN05710865	5549-NonSp/ST21	Clostridioides difficile
GCA_002301465.1	MOPY00000000	SAMN05710862	5544-AH/ST67	Clostridioides difficile
GCA_002301455.1	MOPX00000000	SAMN05710861	5542-Y/ST2	Clostridioides difficile
GCA_002301435.1	MOPW00000000	SAMN05710860	5541-CF/ST37	Clostridioides difficile
GCA_002301395.1	MOPS00000000	SAMN05710856	5505-Y/ST2	Clostridioides difficile
GCA_002301405.1	MOPT00000000	SAMN05710857	5537-D/ST9	Clostridioides difficile
GCA_002301375.1	MOQJ00000000	SAMN05710873	5559-DH/ST42	Clostridioides difficile
GCA_002301335.1	MOQH00000000	SAMN05710871	5557-DH/ST42	Clostridioides difficile
GCA_002301325.1	MOQG00000000	SAMN05710870	5555-DH/ST42	Clostridioides difficile
GCA_002301305.1	MOPZ00000000	SAMN05710863	5547-DH/ST42	Clostridioides difficile
GCA_002301245.1	MOPP00000000	SAMN05710852	5500-DH/ST42	Clostridioides difficile
GCA_002301265.1	MOPQ00000000	SAMN05710854	5503-Y/ST2	Clostridioides difficile
GCA_002301255.1	MOPO00000000	SAMN05710853	5502-NonSp/novelST	Clostridioides difficile
GCA_002301235.1	MOPN00000000	SAMN05710851	5497-Y/ST2	Clostridioides difficile
GCA_002301165.1	MOPL00000000	SAMN05710849	5495-AF/ST41	Clostridioides difficile
GCA_002301105.1	MOPI00000000	SAMN05710846	5492-M/ST15	Clostridioides difficile
GCA_002301075.1	MOPF00000000	SAMN05710843	5489-M/ST15	Clostridioides difficile
GCA_002301185.1	MOPM00000000	SAMN05710850	5496-Y/ST110	Clostridioides difficile
GCA_002300925.1	MNBS00000000	SAMN05710836	5481-DH/ST42	Clostridioides difficile
GCA_002301125.1	MOPJ00000000	SAMN05710847	5493-DH/ST42	Clostridioides difficile
GCA_002301145.1	MOPK00000000	SAMN05710848	5494-Y/ST110	Clostridioides difficile
GCA_002301085.1	MOPG00000000	SAMN05710844	5490-CF/ST37	Clostridioides difficile
GCA_002301035.1	MOPD00000000	SAMN05710841	5487-NonSp/novelST	Clostridioides difficile
GCA_002301025.1	MOPE00000000	SAMN05710842	5488-DH/ST42	Clostridioides difficile
GCA_002301095.1	MOPH00000000	SAMN05710845	5491-N/ST10	Clostridioides difficile
GCA_002300995.1	MNBV00000000	SAMN05710839	5485-Y/ST2	Clostridioides difficile
GCA_002301015.1	MOPC00000000	SAMN05710840	5486-Y/ST2	Clostridioides difficile
GCA_002300935.1	MNBP00000000	SAMN05710833	5478-N/ST10	Clostridioides difficile
GCA_002300955.1	MNBU00000000	SAMN05710838	5483-L/ST55	Clostridioides difficile
GCA_002300915.1	MNBT00000000	SAMN05710837	5482-L/ST55	Clostridioides difficile
GCA_002300865.1	MNBR00000000	SAMN05710835	5480-E/ST6	Clostridioides difficile
GCA_002300835.1	MNBA00000000	SAMN05710831	5475-DH/ST42	Clostridioides difficile
GCA_002300855.1	MNBQ00000000	SAMN05710834	5479-NonSp/ST229	Clostridioides difficile
GCA_002300845.1	MNBB00000000	SAMN05710832	5477-AQ/ST26	Clostridioides difficile
GCA_002304585.1	MOQZ00000000	SAMN05710882	6592-G/ST8	Clostridioides difficile
GCA_002304575.1	MOPR00000000	SAMN05710855	5504-L/ST55	Clostridioides difficile
GCA_002304245.1	MPFD00000000	SAMN05710936	7466-DH/ST42	Clostridioides difficile
GCA_002304265.1	MPGD00000000	SAMN05710951	7486-A/ST43	Clostridioides difficile
GCA_002304255.1	MPGF00000000	SAMN05710932	7462-DH/ST42	Clostridioides difficile

BioProject

Result Filters

Display Settings:

Send to:

Links from Nucleotide

Clostridioides difficile

Genome sequencing and assembly of clinical Clostridium difficile isolates from children

Supplemental Content

Related information

LinkOut to external resources

Recent activity