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Accession: PRJNA329489 ID: 329489

Genome sequencing and assembly of relic peas symbionts

Vicia alpestris is endemic plant, which grows in Caucasus Mountains region: Armenia, Azerbaijan, Turkey, Georgia and Russian Federation. More...
AccessionPRJNA329489
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications
  • Safronova VI et al., "Rhizobial Microsymbionts of Kamchatka Oxytropis Species Possess Genes of the Type III and VI Secretion Systems, Which Can Affect the Development of Symbiosis.", Mol Plant Microbe Interact, 2020 Oct;33(10):1232-1241
  • Safronova VI et al., "Taxonomically Different Co-Microsymbionts of a Relict Legume, Oxytropis popoviana, Have Complementary Sets of Symbiotic Genes and Together Increase the Efficiency of Plant Nodulation.", Mol Plant Microbe Interact, 2018 Aug;31(8):833-841
Grants
  • "The study of the formation of the specificity of plant-microbe interactions with relict of leguminous plants and its relation to productivity symbiosis" (Grant ID 16-16-00080, Russian Science Foundation)
SubmissionRegistration date: 18-Jul-2016
ARRIAM
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)760
WGS master15
Genomic DNA72
SRA Experiments32
Protein Sequences195739
Publications
PubMed2
Other datasets
BioSample43
Assembly34
Assembly details:
Assembly levelNumber of Assemblies
19
15
34
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_003351345.1ContigQQTO00000000
SAMN09702737
RCAM 04680
GCA_003351325.1ContigQQTP00000000
SAMN09702738
RCAM 04685
GCA_004123815.1ContigMZXT00000000
SAMN06564164
Tri-39
GCA_004123845.1ContigNBDP00000000
SAMN06564167
Tri-44
GCA_003952665.1Complete genomeSAMN05947122
Tri-49
GCA_004123895.1ContigMZXU00000000
SAMN06579178
Tri-54
GCA_030144325.1Complete genomeSAMN34729248
A18/4-2
GCA_004123905.1ContigMZXW00000000
SAMN06603674
Opo-243
GCA_025452235.1Complete genomeSAMN30789408
A18/4-1
GCA_025452255.1Complete genomeSAMN30789411
A8/3-2
GCA_004123915.1ContigMZXX00000000
SAMN06603675
Opo-242
GCA_014189455.1Complete genomeSAMN14403981
583
GCA_003722235.1ContigQKOD00000000
SAMN09378957
Opo-235
GCA_003253745.1ContigMZXV00000000
SAMN06603672
Ach-343
GCA_014189435.1Complete genomeSAMN14403980
582
GCA_002741015.1Complete genomeSAMN05413551
V5/3m
GCA_003010955.1ContigPGGO00000000
SAMN08010942
STM 196
GCA_003010935.1ContigPGGN00000000
SAMN08010943
PEPV15
GCA_003010965.1ContigPGGM00000000
SAMN08010944
CCBAU 03422
GCA_014189505.1Complete genomeSAMN14403982
628
GCA_025452215.1Complete genomeSAMN30789409
A18/5-2
GCA_002764115.1Complete genomeSAMN05946057
Tri-48; RCAM 03910
GCA_002763465.1ContigMZMT00000000
SAMN06564107
Tri-38
GCA_025452195.1Complete genomeSAMN30789410
A18/3m
GCA_014189635.1Complete genomeSAMN14403978
RCAM1365
GCA_014189575.1Complete genomeSAMN14403974
RCAM0626
GCA_014189555.1Complete genomeSAMN14403973
RCAM0610
GCA_014189655.1Complete genomeSAMN14403977
RCAM2802
GCA_004123835.1ContigMZMU00000000
SAMN06564165
Tri-43
GCA_014189535.1Complete genomeSAMN14403983
629
GCA_016901135.1ContigJAFEVL000000000
SAMN17833331
Opo-234
GCA_014189615.1Complete genomeSAMN14403976
RCAM1750
GCA_014189595.1Complete genomeSAMN14403975
RCAM1115
GCA_014189415.1Complete genomeSAMN14403979
581
SRA Data Details
ParameterValue
Data volume, Gbases23
Data volume, Mbytes19775

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