C. difficile cgMLST scheme development and evaluat... (ID 445254) - BioProject

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Accession: PRJEB23450 ID: 445254

C. difficile cgMLST scheme development and evaluation

In this study, we developed and evaluated a core genome multilocus sequence typing (cgMLST) scheme for Clostridioides (Clostridium) difficile. More...

Accession	PRJEB23450
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 22-Mar-2018 - University Hospital Muenster - University Hospital Muenster - University Hospital Muenster

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3474
WGS master	24
SRA Experiments	21
Other datasets
BioSample	45
Assembly	24

Assembly details:

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Assembly level

Number of Assemblies

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Total

24
24

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_900243125.1	OEZK00000000	SAMEA104432228	51680	Clostridioides difficile
GCA_900243245.1	OEZP00000000	SAMEA104432238	IS 25	Clostridioides difficile
GCA_900243175.1	OEZM00000000	SAMEA104432240	J9965	Clostridioides difficile
GCA_900243255.1	OEZT00000000	SAMEA104432239	IS 58	Clostridioides difficile
GCA_900243235.1	OEZO00000000	SAMEA104432234	CD08-070	Clostridioides difficile
GCA_900243265.1	OEZQ00000000	SAMEA104432235	CH6223	Clostridioides difficile
GCA_900243205.1	OEZU00000000	SAMEA104432236	CH6230	Clostridioides difficile
GCA_900243105.1	OEZE00000000	SAMEA104432232	8864	Clostridioides difficile
GCA_900243195.1	OEZN00000000	SAMEA104432233	CD07-468	Clostridioides difficile
GCA_900243095.1	OEZG00000000	SAMEA104432231	8785	Clostridioides difficile
GCA_900243115.1	OEZD00000000	SAMEA104432229	57267	Clostridioides difficile
GCA_900243085.1	OEZF00000000	SAMEA104432230	7325	Clostridioides difficile
GCA_900243215.1	OEZS00000000	SAMEA104432227	51377	Clostridioides difficile
GCA_900243155.1	OEZC00000000	SAMEA104432226	2402	Clostridioides difficile
GCA_900243075.1	OEZH00000000	SAMEA104432225	173070	Clostridioides difficile
GCA_900243225.1	OEZL00000000	SAMEA104432224	1470	Clostridioides difficile
GCA_900243295.1	OEZY00000000	SAMEA104432247	WA151	Clostridioides difficile
GCA_900243285.1	OEZZ00000000	SAMEA104432246	SUC36	Clostridioides difficile
GCA_900243315.1	OFAB00000000	SAMEA104432245	SE844	Clostridioides difficile
GCA_900243345.1	OFAA00000000	SAMEA104432243	R 9385	Clostridioides difficile
GCA_900243305.1	OEZW00000000	SAMEA104432244	SE 881	Clostridioides difficile
GCA_900243185.1	OEZR00000000	SAMEA104432241	R 10870	Clostridioides difficile
GCA_900243325.1	OEZX00000000	SAMEA104432242	R 11402	Clostridioides difficile
GCA_900243275.1	OEZV00000000	SAMEA104432237	ES130	Clostridioides difficile

SRA Data Details

Parameter	Value
Data volume, Gbases	17
Data volume, Mbytes	8625

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C. difficile cgMLST scheme development and evaluation

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