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Accession: PRJNA473381 ID: 473381

DNA sequence-based re-assessment ofCronobacter sakazakii strains isolated from dairy products

This study re-analyzed, using multi-locus sequence typing (MLST) and whole genome sequence with single nucleotide polymorphism analysis (WGS-SNP), 52 strains which had been identified as Enterobacter sakazakii as according to the convention at the time of isolation.
AccessionPRJNA473381
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 28-May-2018
Shanghai Entry-Exit Inspection and Quarantine Bureau
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1721
WGS master52
Other datasets
BioSample52
Assembly52
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Contig Contig
Total
27
25
52
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003206315.1ScaffoldQIRU00000000SAMN09273092
CS-56
Cronobacter sakazakii
GCA_003206325.1ScaffoldQIRN00000000SAMN09273099
CS-64
Cronobacter sakazakii
GCA_003207255.1ScaffoldQISO00000000SAMN09273072
CS-30
Cronobacter sakazakii
GCA_003207235.1ScaffoldQISM00000000SAMN09273074
CS-33
Cronobacter sakazakii
GCA_003207195.1ScaffoldQISJ00000000SAMN09273077
CS-36
Cronobacter sakazakii
GCA_003206905.1ContigQIRH00000000SAMN09273105
CS-72
Cronobacter sakazakii
GCA_003207275.1ContigQISQ00000000SAMN09273070
CS-24
Cronobacter sakazakii
GCA_003207175.1ScaffoldQISH00000000SAMN09273079
CS-38
Cronobacter sakazakii
GCA_003207135.1ContigQISG00000000SAMN09273080
CS-42
Cronobacter sakazakii
GCA_003207145.1ContigQISF00000000SAMN09273081
CS-43
Cronobacter sakazakii
GCA_003207115.1ScaffoldQISE00000000SAMN09273082
CS-44
Cronobacter sakazakii
GCA_003207095.1ContigQISA00000000SAMN09273086
CS-49
Cronobacter sakazakii
GCA_003207075.1ScaffoldQIRZ00000000SAMN09273087
CS-51
Cronobacter sakazakii
GCA_003207055.1ContigQIRX00000000SAMN09273089
CS-53
Cronobacter sakazakii
GCA_003207025.1ContigQIRT00000000SAMN09273093
CS-57
Cronobacter sakazakii
GCA_003207005.1ContigQIRR00000000SAMN09273095
CS-60
Cronobacter sakazakii
GCA_003206965.1ScaffoldQIRL00000000SAMN09273101
CS-66
Cronobacter sakazakii
GCA_003206985.1ScaffoldQIRM00000000SAMN09273100
CS-65
Cronobacter sakazakii
GCA_003206925.1ContigQIRI00000000SAMN09273104
CS-71
Cronobacter sakazakii
GCA_003206935.1ScaffoldQIRJ00000000SAMN09273103
CS-70
Cronobacter sakazakii
GCA_003206435.1ScaffoldQISB00000000SAMN09273085
CS-48
Cronobacter sakazakii
GCA_003206445.1ScaffoldQISP00000000SAMN09273071
CS-25
Cronobacter sakazakii
GCA_003206415.1ContigQIRV00000000SAMN09273091
CS-55
Cronobacter sakazakii
GCA_003206395.1ContigQITE00000000SAMN09273056
CS-4
Cronobacter sakazakii
GCA_003206365.1ContigQISN00000000SAMN09273073
CS-32
Cronobacter sakazakii
GCA_003206355.1ScaffoldQIRY00000000SAMN09273088
CS-52
Cronobacter sakazakii
GCA_003207755.1ContigQITB00000000SAMN09273059
CS-8
Cronobacter sakazakii
GCA_003207775.1ContigQITD00000000SAMN09273057
CS-5
Cronobacter sakazakii
GCA_003207715.1ScaffoldQIST00000000SAMN09273067
CS-19
Cronobacter sakazakii
GCA_003207725.1ScaffoldQISV00000000SAMN09273065
CS-17
Cronobacter sakazakii
GCA_003207675.1ScaffoldQISL00000000SAMN09273075
CS-34
Cronobacter sakazakii
GCA_003207645.1ScaffoldQISD00000000SAMN09273083
CS-45
Cronobacter sakazakii
GCA_003207635.1ScaffoldQISI00000000SAMN09273078
CS-37
Cronobacter sakazakii
GCA_003207615.1ContigQIRW00000000SAMN09273090
CS-54
Cronobacter sakazakii
GCA_003207595.1ContigQISC00000000SAMN09273084
CS-47
Cronobacter sakazakii
GCA_003207575.1ContigQIRS00000000SAMN09273094
CS-58
Cronobacter sakazakii
GCA_003207555.1ContigQIRQ00000000SAMN09273096
CS-61
Cronobacter sakazakii
GCA_003207495.1ContigQIRK00000000SAMN09273102
CS-67
Cronobacter sakazakii
GCA_003207535.1ScaffoldQIRP00000000SAMN09273097
CS-62
Cronobacter sakazakii
GCA_003207515.1ScaffoldQIRO00000000SAMN09273098
CS-63
Cronobacter sakazakii
GCA_003207475.1ScaffoldQITG00000000SAMN09273054
CS-1
Cronobacter sakazakii
GCA_003207455.1ContigQITF00000000SAMN09273055
CS-2
Cronobacter sakazakii
GCA_003207435.1ScaffoldQITC00000000SAMN09273058
CS-6
Cronobacter sakazakii
GCA_003207375.1ScaffoldQISY00000000SAMN09273062
CS-13
Cronobacter sakazakii
GCA_003207395.1ScaffoldQITA00000000SAMN09273060
CS-9
Cronobacter sakazakii
GCA_003207405.1ContigQISZ00000000SAMN09273061
CS-10
Cronobacter sakazakii
GCA_003207335.1ScaffoldQISW00000000SAMN09273064
CS-15
Cronobacter sakazakii
GCA_003207315.1ScaffoldQISU00000000SAMN09273066
CS-18
Cronobacter sakazakii
GCA_003207345.1ContigQISX00000000SAMN09273063
CS-14
Cronobacter sakazakii
GCA_003207215.1ContigQISK00000000SAMN09273076
CS-35
Enterobacter hormaechei
GCA_003207295.1ContigQISS00000000SAMN09273068
CS-22
Escherichia coli
GCA_003207695.1ContigQISR00000000SAMN09273069
CS-23
Franconibacter helveticus

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