Escherichia coli (ID 472992) - BioProject

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Accession: PRJNA472992 ID: 472992

Escherichia coli

Canadian strains for Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association

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Strachan et al., 2015 "Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association"

Accession	PRJNA472992
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Strachan NJ et al., "Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association.", Sci Rep, 2015 Oct 7;5:14145
Submission	Registration date: 3-Aug-2018 Public Health Agency of Canada
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	37168
WGS master	172
Publications
PubMed	1
PMC	1
Other datasets
BioSample	172
Assembly	172

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

172
172

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003362715.1	QHBA00000000	SAMN09257549	ECI-216	Escherichia coli
GCA_003362695.1	QHAW00000000	SAMN09257553	ECI-241	Escherichia coli
GCA_003362665.1	QHAX00000000	SAMN09257552	ECI-240	Escherichia coli
GCA_003362645.1	QHAZ00000000	SAMN09257550	ECI-217	Escherichia coli
GCA_003362635.1	QHAY00000000	SAMN09257551	ECI-221	Escherichia coli
GCA_003362615.1	QHAV00000000	SAMN09257554	ECI-246	Escherichia coli
GCA_003362595.1	QHAS00000000	SAMN09257557	ECI-258	Escherichia coli
GCA_003362575.1	QHAR00000000	SAMN09257558	ECI-264	Escherichia coli
GCA_003362535.1	QHAT00000000	SAMN09257556	ECI-252	Escherichia coli
GCA_003362555.1	QHAU00000000	SAMN09257555	ECI-247	Escherichia coli
GCA_003362505.1	QHAQ00000000	SAMN09257559	ECI-270	Escherichia coli
GCA_003362495.1	QHAO00000000	SAMN09257561	ECI-306	Escherichia coli
GCA_003362475.1	QHAP00000000	SAMN09257560	ECI-272	Escherichia coli
GCA_003362455.1	QHAN00000000	SAMN09257562	ECI-331	Escherichia coli
GCA_003362425.1	QHAL00000000	SAMN09257564	ECI-357	Escherichia coli
GCA_003362415.1	QHAJ00000000	SAMN09257566	ECI-366	Escherichia coli
GCA_003362395.1	QHAM00000000	SAMN09257563	ECI-351	Escherichia coli
GCA_003362375.1	QHAK00000000	SAMN09257565	ECI-363	Escherichia coli
GCA_003362355.1	QHAI00000000	SAMN09257567	ECI-497	Escherichia coli
GCA_003362335.1	QHAH00000000	SAMN09257568	ECI-504	Escherichia coli
GCA_003362315.1	QHAG00000000	SAMN09257569	ECI-508	Escherichia coli
GCA_003362295.1	QHAF00000000	SAMN09257570	ECI-562	Escherichia coli
GCA_003362265.1	QGZZ00000000	SAMN09257576	ECI-633	Escherichia coli
GCA_003362255.1	QHAE00000000	SAMN09257571	ECI-564	Escherichia coli
GCA_003362235.1	QHAD00000000	SAMN09257572	ECI-576	Escherichia coli
GCA_003362215.1	QHAB00000000	SAMN09257574	ECI-587	Escherichia coli
GCA_003362195.1	QHAC00000000	SAMN09257573	ECI-586	Escherichia coli
GCA_003362175.1	QHAA00000000	SAMN09257575	ECI-588	Escherichia coli
GCA_003362155.1	QGZY00000000	SAMN09257577	ECI-660	Escherichia coli
GCA_003362135.1	QGZT00000000	SAMN09257582	ECI-855	Escherichia coli
GCA_003362115.1	QGZW00000000	SAMN09257579	ECI-793	Escherichia coli
GCA_003362095.1	QGZX00000000	SAMN09257578	ECI-684	Escherichia coli
GCA_003362075.1	QGZR00000000	SAMN09257584	ECI-881	Escherichia coli
GCA_003362045.1	QGZU00000000	SAMN09257581	ECI-826	Escherichia coli
GCA_003362035.1	QGZV00000000	SAMN09257580	ECI-822	Escherichia coli
GCA_003362015.1	QGZS00000000	SAMN09257583	ECI-857	Escherichia coli
GCA_003361995.1	QGZO00000000	SAMN09257587	ECI-887	Escherichia coli
GCA_003361965.1	QGZQ00000000	SAMN09257585	ECI-882	Escherichia coli
GCA_003361955.1	QGZP00000000	SAMN09257586	ECI-886	Escherichia coli
GCA_003361935.1	QGZN00000000	SAMN09257588	ECI-888	Escherichia coli
GCA_003361915.1	QGZL00000000	SAMN09257590	ECI-891	Escherichia coli
GCA_003361885.1	QGZK00000000	SAMN09257591	ECI-892	Escherichia coli
GCA_003361875.1	QGZM00000000	SAMN09257589	ECI-889	Escherichia coli
GCA_003361855.1	QGZJ00000000	SAMN09257592	ECI-900	Escherichia coli
GCA_003361825.1	QGZF00000000	SAMN09257596	ECI-1130	Escherichia coli
GCA_003361815.1	QGZH00000000	SAMN09257594	ECI-907	Escherichia coli
GCA_003361795.1	QGZI00000000	SAMN09257593	ECI-902	Escherichia coli
GCA_003361775.1	QGZD00000000	SAMN09257598	ECI-1146	Escherichia coli
GCA_003361755.1	QGZG00000000	SAMN09257595	ECI-1049	Escherichia coli
GCA_003361735.1	QGZE00000000	SAMN09257597	ECI-1134	Escherichia coli
GCA_003361695.1	QHBI00000000	SAMN09257602	ECI-1203	Escherichia coli
GCA_003361705.1	QGZC00000000	SAMN09257599	ECI-1156	Escherichia coli
GCA_003361675.1	QGYZ00000000	SAMN09257603	ECI-1330	Escherichia coli
GCA_003361655.1	QGZB00000000	SAMN09257600	ECI-1159	Escherichia coli
GCA_003361635.1	QGZA00000000	SAMN09257601	ECI-1171	Escherichia coli
GCA_003361615.1	QGYW00000000	SAMN09257606	ECI-1484	Escherichia coli
GCA_003361585.1	QGYY00000000	SAMN09257604	ECI-1433	Escherichia coli
GCA_003361575.1	QGYX00000000	SAMN09257605	ECI-1437	Escherichia coli
GCA_003361555.1	QGYV00000000	SAMN09257607	ECI-1618	Escherichia coli
GCA_003361535.1	QGYU00000000	SAMN09257608	ECI-1624	Escherichia coli
GCA_003361515.1	QGYS00000000	SAMN09257610	ECI-1639	Escherichia coli
GCA_003361495.1	QGYT00000000	SAMN09257609	ECI-1629	Escherichia coli
GCA_003361465.1	QGYM00000000	SAMN09257616	ECI-1718	Escherichia coli
GCA_003361455.1	QGYR00000000	SAMN09257611	ECI-1655	Escherichia coli
GCA_003361435.1	QGYQ00000000	SAMN09257612	ECI-1677	Escherichia coli
GCA_003361405.1	QGYN00000000	SAMN09257615	ECI-1711	Escherichia coli
GCA_003361395.1	QGYP00000000	SAMN09257613	ECI-1691	Escherichia coli
GCA_003361375.1	QGYO00000000	SAMN09257614	ECI-1695	Escherichia coli
GCA_003361355.1	QGYL00000000	SAMN09257617	ECI-1763	Escherichia coli
GCA_003361335.1	QGYK00000000	SAMN09257618	ECI-1785	Escherichia coli
GCA_003361305.1	QGYF00000000	SAMN09257623	ECI-1909	Escherichia coli
GCA_003361295.1	QGYI00000000	SAMN09257620	ECI-1889	Escherichia coli
GCA_003361275.1	QGYJ00000000	SAMN09257619	ECI-1791	Escherichia coli
GCA_003361255.1	QGYG00000000	SAMN09257622	ECI-1908	Escherichia coli
GCA_003361235.1	QGYH00000000	SAMN09257621	ECI-1907	Escherichia coli
GCA_003361215.1	QGYE00000000	SAMN09257624	ECI-1910	Escherichia coli
GCA_003361195.1	QGYA00000000	SAMN09257628	ECI-2142	Escherichia coli
GCA_003361155.1	QGYC00000000	SAMN09257626	ECI-2113	Escherichia coli
GCA_003361175.1	QGYD00000000	SAMN09257625	ECI-1912	Escherichia coli
GCA_003361135.1	QGYB00000000	SAMN09257627	ECI-2121	Escherichia coli
GCA_003361115.1	QGXV00000000	SAMN09257633	ECI-2223	Escherichia coli
GCA_003361095.1	QGXX00000000	SAMN09257631	ECI-2211	Escherichia coli
GCA_003361065.1	QGXZ00000000	SAMN09257629	ECI-2199	Escherichia coli
GCA_003361055.1	QGXW00000000	SAMN09257632	ECI-2214	Escherichia coli
GCA_003361035.1	QGXY00000000	SAMN09257630	ECI-2200	Escherichia coli
GCA_003361015.1	QGXU00000000	SAMN09257634	ECI-2227	Escherichia coli
GCA_003360985.1	QGXT00000000	SAMN09257635	ECI-2287	Escherichia coli
GCA_003360965.1	QGXS00000000	SAMN09257636	ECI-2288	Escherichia coli
GCA_003360955.1	QGXP00000000	SAMN09257639	ECI-2350	Escherichia coli
GCA_003360935.1	QGXR00000000	SAMN09257637	ECI-2291	Escherichia coli
GCA_003360915.1	QGXQ00000000	SAMN09257638	ECI-2324	Escherichia coli
GCA_003360895.1	QGXO00000000	SAMN09257640	ECI-2355	Escherichia coli
GCA_003360865.1	QGXN00000000	SAMN09257641	ECI-2358	Escherichia coli
GCA_003360855.1	QGXL00000000	SAMN09257643	ECI-2376	Escherichia coli
GCA_003360835.1	QGXM00000000	SAMN09257642	ECI-2359	Escherichia coli
GCA_003360815.1	QGXK00000000	SAMN09257644	ECI-2377	Escherichia coli
GCA_003360785.1	QGXI00000000	SAMN09257646	ECI-2379	Escherichia coli
GCA_003360775.1	QHBG00000000	SAMN09257651	ECI-2384	Escherichia coli
GCA_003360755.1	QGXG00000000	SAMN09257648	ECI-2381	Escherichia coli
GCA_003360735.1	QGXJ00000000	SAMN09257645	ECI-2378	Escherichia coli
GCA_003360715.1	QGXH00000000	SAMN09257647	ECI-2380	Escherichia coli
GCA_003360695.1	QGWZ00000000	SAMN09257658	ECI-2391	Escherichia coli
GCA_003360675.1	QGXF00000000	SAMN09257649	ECI-2382	Escherichia coli
GCA_003360655.1	QHBH00000000	SAMN09257650	ECI-2383	Escherichia coli
GCA_003360635.1	QHBF00000000	SAMN09257652	ECI-2385	Escherichia coli
GCA_003360615.1	QGXE00000000	SAMN09257653	ECI-2386	Escherichia coli
GCA_003360595.1	QGXC00000000	SAMN09257655	ECI-2388	Escherichia coli
GCA_003360565.1	QGXD00000000	SAMN09257654	ECI-2387	Escherichia coli
GCA_003360555.1	QGXB00000000	SAMN09257656	ECI-2389	Escherichia coli
GCA_003360535.1	QGWW00000000	SAMN09257661	ECI-2394	Escherichia coli
GCA_003360515.1	QGXA00000000	SAMN09257657	ECI-2390	Escherichia coli
GCA_003360495.1	QGWY00000000	SAMN09257659	ECI-2392	Escherichia coli
GCA_003360475.1	QGWX00000000	SAMN09257660	ECI-2393	Escherichia coli
GCA_003360435.1	QGWT00000000	SAMN09257666	ECI-2399	Escherichia coli
GCA_003360415.1	QHBD00000000	SAMN09257663	ECI-2396	Escherichia coli
GCA_003360425.1	QHBE00000000	SAMN09257662	ECI-2395	Escherichia coli
GCA_003360395.1	QGWV00000000	SAMN09257664	ECI-2397	Escherichia coli
GCA_003360375.1	QGWU00000000	SAMN09257665	ECI-2398	Escherichia coli
GCA_003360355.1	QGWS00000000	SAMN09257667	ECI-2400	Escherichia coli
GCA_003360335.1	QGWQ00000000	SAMN09257669	ECI-2402	Escherichia coli
GCA_003360315.1	QGWR00000000	SAMN09257668	ECI-2401	Escherichia coli
GCA_003360295.1	QGWN00000000	SAMN09257672	ECI-2405	Escherichia coli
GCA_003360255.1	QHBC00000000	SAMN09257674	ECI-2407	Escherichia coli
GCA_003360265.1	QGWP00000000	SAMN09257670	ECI-2403	Escherichia coli
GCA_003360235.1	QGWO00000000	SAMN09257671	ECI-2404	Escherichia coli
GCA_003360215.1	QGWM00000000	SAMN09257673	ECI-2406	Escherichia coli
GCA_003360195.1	QGWL00000000	SAMN09257676	ECI-2409	Escherichia coli
GCA_003360175.1	QGWK00000000	SAMN09257677	ECI-2410	Escherichia coli
GCA_003360155.1	QHBB00000000	SAMN09257675	ECI-2408	Escherichia coli
GCA_003360135.1	QGWJ00000000	SAMN09257678	ECI-2411	Escherichia coli
GCA_003360115.1	QGWI00000000	SAMN09257679	ECI-2503	Escherichia coli
GCA_003360095.1	QGWH00000000	SAMN09257680	ECI-2504	Escherichia coli
GCA_003360075.1	QGWG00000000	SAMN09257681	ECI-2505	Escherichia coli
GCA_003360055.1	QJHJ00000000	SAMN09257682	ECI-2506	Escherichia coli
GCA_003360035.1	QGWF00000000	SAMN09257683	ECI-2507	Escherichia coli
GCA_003360015.1	QGWE00000000	SAMN09257684	ECI-2508	Escherichia coli
GCA_003359995.1	QJHI00000000	SAMN09257685	ECI-2509	Escherichia coli
GCA_003359965.1	QOZZ00000000	SAMN09257688	ECI-2512	Escherichia coli
GCA_003359955.1	QJHH00000000	SAMN09257686	ECI-2510	Escherichia coli
GCA_003359925.1	QJHG00000000	SAMN09257687	ECI-2511	Escherichia coli
GCA_003359915.1	QGWD00000000	SAMN09257689	ECI-2513	Escherichia coli
GCA_003359895.1	QGWC00000000	SAMN09257690	ECI-2514	Escherichia coli
GCA_003359875.1	QGVZ00000000	SAMN09257693	ECI-2517	Escherichia coli
GCA_003359855.1	QGWB00000000	SAMN09257691	ECI-2515	Escherichia coli
GCA_003359835.1	QGWA00000000	SAMN09257692	ECI-2516	Escherichia coli
GCA_003359815.1	QGVY00000000	SAMN09257694	ECI-2518	Escherichia coli
GCA_003359795.1	QGVV00000000	SAMN09257697	ECI-2521	Escherichia coli
GCA_003359775.1	QGVX00000000	SAMN09257695	ECI-2519	Escherichia coli
GCA_003359755.1	QGVW00000000	SAMN09257696	ECI-2520	Escherichia coli
GCA_003359735.1	QGVS00000000	SAMN09257702	ECI-2526	Escherichia coli
GCA_003359715.1	QGVU00000000	SAMN09257698	ECI-2522	Escherichia coli
GCA_003359695.1	QJHF00000000	SAMN09257699	ECI-2523	Escherichia coli
GCA_003359675.1	QJHE00000000	SAMN09257700	ECI-2524	Escherichia coli
GCA_003359655.1	QGVT00000000	SAMN09257701	ECI-2525	Escherichia coli
GCA_003359635.1	QGVQ00000000	SAMN09257704	ECI-2978	Escherichia coli
GCA_003359615.1	QGVO00000000	SAMN09257706	ECI-2980	Escherichia coli
GCA_003359595.1	QGVR00000000	SAMN09257703	ECI-2527	Escherichia coli
GCA_003359575.1	QGVP00000000	SAMN09257705	ECI-2979	Escherichia coli
GCA_003359555.1	QGVN00000000	SAMN09257707	ECI-3004	Escherichia coli
GCA_003359515.1	QGVL00000000	SAMN09257709	ECI-3006	Escherichia coli
GCA_003359495.1	QGVK00000000	SAMN09257710	ECI-3033	Escherichia coli
GCA_003359475.1	QGVM00000000	SAMN09257708	ECI-3005	Escherichia coli
GCA_003359445.1	QGVJ00000000	SAMN09257711	ECI-3034	Escherichia coli
GCA_003359415.1	QGVI00000000	SAMN09257712	ECI-3035	Escherichia coli
GCA_025331405.1	QOZO00000000	SAMN09655950	ECI-1746	Escherichia coli
GCA_025331385.1	QOZP00000000	SAMN09655949	ECI-1745	Escherichia coli
GCA_025331355.1	QOZN00000000	SAMN09655951	ECI-1747	Escherichia coli
GCA_025331335.1	QOZM00000000	SAMN09655952	ECI-1748	Escherichia coli
GCA_025331315.1	QOZL00000000	SAMN09655953	ECI-1749	Escherichia coli
GCA_025331295.1	QOZK00000000	SAMN09655954	ECI-1864	Escherichia coli
GCA_025331275.1	QOZJ00000000	SAMN09655955	ECI-249	Escherichia coli
GCA_025331255.1	QOZI00000000	SAMN09655956	ECI-1914	Escherichia coli

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Escherichia coli

Canadian strains for Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association

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