Citrobacter (ID 412823) - BioProject

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Accession: PRJNA412823 ID: 412823

Citrobacter

INSeq of Citrobacter freundii during bloodstream infection

The goal of this study was to identify bacterial genes that contribute to the survival and fitness of an opportunistic pathogen, Citrobacter freundii, during bacteremia. More...

Accession	PRJNA412823
Data Type	Genome sequencing and assembly, Raw sequence reads, Phenotype or Genotype
Scope	Multispecies
Publications	Anderson MT et al., "Citrobacter freundii fitness during bloodstream infection.", Sci Rep, 2018 Aug 7;8(1):11792
Grants	"Molecular mechanisms of uropathogenesis" (Grant ID R01 AI059722, National Institute of Allergy and Infectious Diseases Extramural Activities)
Submission	Registration date: 2-Oct-2017 University of Michigan
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	12
SRA Experiments	20
Protein Sequences	37540
Publications
PubMed	1
PMC	1
Other datasets
BioSample	8
Assembly	8
Supplementary data
Base modification	8

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

8
8

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_003665675.1	2	SAMN07729548	UMH16	Citrobacter freundii
GCA_003665655.1	1	SAMN07729552	HM38	Citrobacter freundii
GCA_003665635.1	1	SAMN07729545	UMH13	Citrobacter freundii
GCA_003665615.1	3	SAMN07729546	UMH14	Citrobacter freundii
GCA_003665595.1	1	SAMN07729547	UMH15	Citrobacter freundii
GCA_003665535.1	2	SAMN07729551	UMH19	Citrobacter freundii
GCA_003665575.1	1	SAMN07729549	UMH17	Citrobacter pasteurii
GCA_003665555.1	1	SAMN07729550	UMH18	Citrobacter werkmanii

SRA Data Details

Parameter	Value
Data volume, Gbases	62
Data volume, Mbytes	92970

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Citrobacter

INSeq of Citrobacter freundii during bloodstream infection

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