ID 339843 - BioProject

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Accession: PRJNA339843 ID: 339843

Consortium on Resistance Against Carbapenems in Klebsiella pneumoniae and Other Enterobacteriaceae (CRACKLE) Whole Genome Sequencing

See Genome Information for Klebsiella pneumoniae

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3602 additional projects are related by organism.

Carbapenem-resistant Enterobacteriaceae from US hospitals will be sequenced and compared to determine the genetic relationships among resistant strains

Accession	PRJNA339843
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"The J. Craig Venter Institute Genome Center for Infectious Diseases" (Grant ID 1U19AI110819, National Institute of Allergy and Infectious Diseases)
Submission	Registration date: 14-Dec-2016 JCVI
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	21267
WGS master	191
Genomic DNA	5
SRA Experiments	225
Protein Sequences	1039963
Other datasets
BioSample	298
Assembly	192

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
191
192

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002185305.2	NEYS00000000		SAMN06812673	CRK0001	Citrobacter werkmanii
GCA_002185225.2	NEYO00000000		SAMN06812669	CRK0005	Enterobacter asburiae
GCA_002184445.2	NEYN00000000		SAMN06812668	CRK0006	Enterobacter hormaechei subsp. steigerwaltii
GCA_002177145.2	NFFB00000000		SAMN06812647	CRK0027	Enterobacter hormaechei subsp. xiangfangensis
GCA_002184665.2	NEYT00000000		SAMN06812614	CRK0060	Enterobacter hormaechei subsp. xiangfangensis
GCA_002185845.2	NEZA00000000		SAMN06812633	CRK0041	Enterobacter hormaechei subsp. xiangfangensis
GCA_009834325.1		5	SAMN10654518	Eh1	Enterobacter hormaechei subsp. hoffmannii
GCA_002184675.2	NEYZ00000000		SAMN06812620	CRK0054	Enterobacter roggenkampii
GCA_002185345.2	NEYY00000000		SAMN06812619	CRK0055	Klebsiella aerogenes
GCA_002184625.2	NEYW00000000		SAMN06812617	CRK0057	Klebsiella aerogenes
GCA_002184575.2	NEYU00000000		SAMN06812615	CRK0059	Klebsiella aerogenes
GCA_002186135.2	NFAQ00000000		SAMN06812590	CRK0084	Klebsiella pneumoniae
GCA_002184985.2	NFAP00000000		SAMN06812589	CRK0085	Klebsiella pneumoniae
GCA_002185355.2	NEZF00000000		SAMN06812638	CRK0036	Klebsiella pneumoniae
GCA_002186265.2	NFBG00000000		SAMN06812606	CRK0068	Klebsiella pneumoniae
GCA_002186045.2	NFAH00000000		SAMN06812625	CRK0049	Klebsiella pneumoniae
GCA_002185125.2	NFBN00000000		SAMN06812613	CRK0061	Klebsiella pneumoniae
GCA_002186185.2	NFAT00000000		SAMN06812593	CRK0081	Klebsiella pneumoniae
GCA_002185215.2	NFCD00000000		SAMN06812588	CRK0086	Klebsiella pneumoniae
GCA_002185415.2	NEZR00000000		SAMN06812651	CRK0023	Klebsiella pneumoniae
GCA_002184485.2	NEYI00000000		SAMN06812663	CRK0011	Klebsiella pneumoniae
GCA_002185105.2	NFBM00000000		SAMN06812612	CRK0062	Klebsiella pneumoniae
GCA_002186005.2	NEZV00000000		SAMN06812655	CRK0019	Klebsiella pneumoniae
GCA_002185705.2	NFBL00000000		SAMN06812611	CRK0063	Klebsiella pneumoniae
GCA_002184415.2	NEYK00000000		SAMN06812665	CRK0009	Klebsiella pneumoniae
GCA_002184515.2	NEYL00000000		SAMN06812666	CRK0008	Klebsiella pneumoniae
GCA_002185925.2	NEZI00000000		SAMN06812641	CRK0033	Klebsiella pneumoniae
GCA_002185885.2	NEZG00000000		SAMN06812639	CRK0035	Klebsiella pneumoniae
GCA_002184745.2	NEZN00000000		SAMN06812646	CRK0028	Klebsiella pneumoniae
GCA_002185425.2	NEZQ00000000		SAMN06812650	CRK0024	Klebsiella pneumoniae
GCA_002185385.2	NEZJ00000000		SAMN06812642	CRK0032	Klebsiella pneumoniae
GCA_002185975.2	NEZP00000000		SAMN06812649	CRK0025	Klebsiella pneumoniae
GCA_002186055.2	NFAC00000000		SAMN06812662	CRK0012	Klebsiella pneumoniae
GCA_002184755.2	NEZO00000000		SAMN06812648	CRK0026	Klebsiella pneumoniae
GCA_002185915.2	NEZK00000000		SAMN06812643	CRK0031	Klebsiella pneumoniae
GCA_002184395.2	NEYJ00000000		SAMN06812664	CRK0010	Klebsiella pneumoniae
GCA_002184505.2	NEYM00000000		SAMN06812667	CRK0007	Klebsiella pneumoniae
GCA_002185965.2	NEZM00000000		SAMN06812645	CRK0029	Klebsiella pneumoniae
GCA_002186165.2	NFAS00000000		SAMN06812592	CRK0082	Klebsiella pneumoniae
GCA_002185495.2	NFAF00000000		SAMN06812623	CRK0051	Klebsiella pneumoniae
GCA_002185285.2	NEZD00000000		SAMN06812636	CRK0038	Klebsiella pneumoniae
GCA_002185905.2	NEZH00000000		SAMN06812640	CRK0034	Klebsiella pneumoniae
GCA_002185575.2	NFAU00000000		SAMN06812594	CRK0080	Klebsiella pneumoniae
GCA_002185485.2	NFAD00000000		SAMN06812621	CRK0053	Klebsiella pneumoniae
GCA_002184955.2	NFAG00000000		SAMN06812624	CRK0050	Klebsiella pneumoniae
GCA_002185055.2	NFBB00000000		SAMN06812601	CRK0073	Klebsiella pneumoniae
GCA_002185835.2	NFCC00000000		SAMN06812587	CRK0087	Klebsiella pneumoniae
GCA_002186275.2	NFBH00000000		SAMN06812607	CRK0067	Klebsiella pneumoniae
GCA_002185645.2	NFAX00000000		SAMN06812597	CRK0077	Klebsiella pneumoniae
GCA_002185815.2	NEZB00000000		SAMN06812634	CRK0040	Klebsiella pneumoniae
GCA_002184945.2	NFAL00000000		SAMN06812629	CRK0045	Klebsiella pneumoniae
GCA_002186375.2	NFBT00000000		SAMN06812578	CRK0096	Klebsiella pneumoniae
GCA_002185075.2	NFBI00000000		SAMN06812608	CRK0066	Klebsiella pneumoniae
GCA_002185735.2	NFBV00000000		SAMN06812580	CRK0094	Klebsiella pneumoniae
GCA_002186095.2	NFAN00000000		SAMN06812631	CRK0043	Klebsiella pneumoniae
GCA_002185185.2	NFBS00000000		SAMN06812577	CRK0097	Klebsiella pneumoniae
GCA_002186205.2	NFBA00000000		SAMN06812600	CRK0074	Klebsiella pneumoniae
GCA_002185025.2	NFAY00000000		SAMN06812598	CRK0076	Klebsiella pneumoniae
GCA_002185515.2	NFAI00000000		SAMN06812626	CRK0048	Klebsiella pneumoniae
GCA_002185755.2	NFCA00000000		SAMN06812585	CRK0089	Klebsiella pneumoniae
GCA_002186335.2	NFBR00000000		SAMN06812576	CRK0098	Klebsiella pneumoniae
GCA_002186365.2	NFBQ00000000		SAMN06812575	CRK0099	Klebsiella pneumoniae
GCA_002185805.2	NFCB00000000		SAMN06812586	CRK0088	Klebsiella pneumoniae
GCA_002185665.2	NFBE00000000		SAMN06812604	CRK0070	Klebsiella pneumoniae
GCA_002186015.2	NEZX00000000		SAMN06812657	CRK0017	Klebsiella pneumoniae
GCA_002184825.2	NEZU00000000		SAMN06812654	CRK0020	Klebsiella pneumoniae
GCA_002184705.2	NEZC00000000		SAMN06812635	CRK0039	Klebsiella pneumoniae
GCA_002186325.2	NFBK00000000		SAMN06812610	CRK0064	Klebsiella pneumoniae
GCA_002184795.2	NEZT00000000		SAMN06812653	CRK0021	Klebsiella pneumoniae
GCA_002185625.2	NFBF00000000		SAMN06812605	CRK0069	Klebsiella pneumoniae
GCA_002185405.2	NEZL00000000		SAMN06812644	CRK0030	Klebsiella pneumoniae
GCA_002184875.2	NEZZ00000000		SAMN06812659	CRK0015	Klebsiella pneumoniae
GCA_002185465.2	NFAB00000000		SAMN06812661	CRK0013	Klebsiella pneumoniae
GCA_002184865.2	NEZY00000000		SAMN06812658	CRK0016	Klebsiella pneumoniae
GCA_002184835.2	NEZW00000000		SAMN06812656	CRK0018	Klebsiella pneumoniae
GCA_002184915.2	NFAA00000000		SAMN06812660	CRK0014	Klebsiella pneumoniae
GCA_002184525.2	NEYP00000000		SAMN06812670	CRK0004	Klebsiella pneumoniae
GCA_001904095.4	MPYU00000000		SAMN05956142	CRK0112	Klebsiella pneumoniae
GCA_001903615.4	MPYH00000000		SAMN05956090	CRK0164	Klebsiella pneumoniae
GCA_001902765.4	MPWC00000000		SAMN05956093	CRK0161	Klebsiella pneumoniae
GCA_001904455.4	MPXX00000000		SAMN05956080	CRK0174	Klebsiella pneumoniae
GCA_001903045.4	MPWS00000000		SAMN05956109	CRK0145	Klebsiella pneumoniae
GCA_001903135.4	MPWG00000000		SAMN05956097	CRK0157	Klebsiella pneumoniae
GCA_001903625.4	MPYG00000000		SAMN05956089	CRK0165	Klebsiella pneumoniae
GCA_001904485.4	MPZK00000000		SAMN05956132	CRK0122	Klebsiella pneumoniae
GCA_002185725.2	NFBU00000000		SAMN06812579	CRK0095	Klebsiella pneumoniae
GCA_002185555.2	NFAM00000000		SAMN06812630	CRK0044	Klebsiella pneumoniae
GCA_002184785.2	NEZS00000000		SAMN06812652	CRK0022	Klebsiella pneumoniae
GCA_002185545.2	NFAK00000000		SAMN06812628	CRK0046	Klebsiella pneumoniae
GCA_002186125.2	NFAR00000000		SAMN06812591	CRK0083	Klebsiella pneumoniae
GCA_002185565.2	NFAO00000000		SAMN06812632	CRK0042	Klebsiella pneumoniae
GCA_002185745.2	NFBZ00000000		SAMN06812584	CRK0090	Klebsiella pneumoniae
GCA_001903685.4	MPYL00000000		SAMN05956152	CRK0102	Klebsiella pneumoniae
GCA_001904245.4	MPYK00000000		SAMN05956151	CRK0103	Klebsiella pneumoniae
GCA_002185135.2	NFBO00000000		SAMN06812573	CRK0101	Klebsiella pneumoniae
GCA_002185155.2	NFBP00000000		SAMN06812574	CRK0100	Klebsiella pneumoniae
GCA_001903995.4	MPZL00000000		SAMN05956133	CRK0121	Klebsiella pneumoniae
GCA_002186405.2	NFBY00000000		SAMN06812583	CRK0091	Klebsiella pneumoniae
GCA_001903925.4	MPYN00000000		SAMN05956135	CRK0119	Klebsiella pneumoniae
GCA_001904495.4	MPZB00000000		SAMN05956149	CRK0105	Klebsiella pneumoniae
GCA_002185045.2	NFAZ00000000		SAMN06812599	CRK0075	Klebsiella pneumoniae
GCA_001904005.4	MPYV00000000		SAMN05956143	CRK0111	Klebsiella pneumoniae
GCA_001903525.4	MPWM00000000		SAMN05956103	CRK0151	Klebsiella pneumoniae
GCA_001903835.4	MPXV00000000		SAMN05956078	CRK0176	Klebsiella pneumoniae
GCA_001903605.4	MPYI00000000		SAMN05956091	CRK0163	Klebsiella pneumoniae
GCA_001903435.4	MPWO00000000		SAMN05956105	CRK0149	Klebsiella pneumoniae
GCA_001902815.4	MPWF00000000		SAMN05956096	CRK0158	Klebsiella pneumoniae
GCA_001903105.4	MPWR00000000		SAMN05956108	CRK0146	Klebsiella pneumoniae
GCA_001904385.4	MPXZ00000000		SAMN05956082	CRK0172	Klebsiella pneumoniae
GCA_001903675.4	MPYR00000000		SAMN05956139	CRK0115	Klebsiella pneumoniae
GCA_001903195.4	MPXK00000000		SAMN05956067	CRK0187	Klebsiella pneumoniae
GCA_001904255.4	MPXY00000000		SAMN05956081	CRK0173	Klebsiella pneumoniae
GCA_001903335.4	MPWZ00000000		SAMN05956116	CRK0138	Klebsiella pneumoniae
GCA_002186245.2	NFBD00000000		SAMN06812603	CRK0071	Klebsiella pneumoniae
GCA_001904325.4	MPYB00000000		SAMN05956084	CRK0170	Klebsiella pneumoniae
GCA_001903355.4	MPWW00000000		SAMN05956113	CRK0141	Klebsiella pneumoniae
GCA_001904295.4	MPYX00000000		SAMN05956145	CRK0109	Klebsiella pneumoniae
GCA_001903095.4	MPWP00000000		SAMN05956106	CRK0148	Klebsiella pneumoniae
GCA_001902835.4	MPWB00000000		SAMN05956124	CRK0130	Klebsiella pneumoniae
GCA_001903125.4	MPXL00000000		SAMN05956068	CRK0186	Klebsiella pneumoniae
GCA_001903495.4	MPXQ00000000		SAMN05956073	CRK0181	Klebsiella pneumoniae
GCA_002184715.2	NEZE00000000		SAMN06812637	CRK0037	Klebsiella pneumoniae
GCA_002186085.2	NFAJ00000000		SAMN06812627	CRK0047	Klebsiella pneumoniae
GCA_001903935.4	MPZC00000000		SAMN05956150	CRK0104	Klebsiella pneumoniae
GCA_001904335.4	MPYD00000000		SAMN05956086	CRK0168	Klebsiella pneumoniae
GCA_001903365.4	MPWT00000000		SAMN05956110	CRK0144	Klebsiella pneumoniae
GCA_001903975.4	MPYF00000000		SAMN05956088	CRK0166	Klebsiella pneumoniae
GCA_001904535.4	MPZA00000000		SAMN05956148	CRK0106	Klebsiella pneumoniae
GCA_002186415.2	NFBX00000000		SAMN06812582	CRK0092	Klebsiella pneumoniae
GCA_001903915.4	MPYZ00000000		SAMN05956147	CRK0107	Klebsiella pneumoniae
GCA_001903875.4	MPYP00000000		SAMN05956137	CRK0117	Klebsiella pneumoniae
GCA_002186215.2	NFAW00000000		SAMN06812596	CRK0078	Klebsiella pneumoniae
GCA_002186255.2	NFBC00000000		SAMN06812602	CRK0072	Klebsiella pneumoniae
GCA_001902875.4	MPWA00000000		SAMN05956123	CRK0131	Klebsiella pneumoniae
GCA_001903775.4	MPXR00000000		SAMN05956074	CRK0180	Klebsiella pneumoniae
GCA_001903845.4	MPXT00000000		SAMN05956076	CRK0178	Klebsiella pneumoniae
GCA_001903555.4	MPXF00000000		SAMN05956122	CRK0132	Klebsiella pneumoniae
GCA_001903265.4	MPXH00000000		SAMN05956064	CRK0190	Klebsiella pneumoniae
GCA_001903255.4	MPXE00000000		SAMN05956121	CRK0133	Klebsiella pneumoniae
GCA_001902865.4	MPXC00000000		SAMN05956119	CRK0135	Klebsiella pneumoniae
GCA_001904105.4	MPYW00000000		SAMN05956144	CRK0110	Klebsiella pneumoniae
GCA_001903695.4	MPXU00000000		SAMN05956077	CRK0177	Klebsiella pneumoniae
GCA_001902905.4	MPXG00000000		SAMN05956063	CRK0191	Klebsiella pneumoniae
GCA_001904015.4	MPYS00000000		SAMN05956140	CRK0114	Klebsiella pneumoniae
GCA_001902955.4	MPXA00000000		SAMN05956117	CRK0137	Klebsiella pneumoniae
GCA_001903285.4	MPXI00000000		SAMN05956065	CRK0189	Klebsiella pneumoniae
GCA_001903175.4	MPXJ00000000		SAMN05956066	CRK0188	Klebsiella pneumoniae
GCA_001904045.4	MPXS00000000		SAMN05956075	CRK0179	Klebsiella pneumoniae
GCA_001903755.4	MPXO00000000		SAMN05956071	CRK0183	Klebsiella pneumoniae
GCA_001903415.4	MPWU00000000		SAMN05956111	CRK0143	Klebsiella pneumoniae
GCA_001904475.4	MPZF00000000		SAMN05956127	CRK0127	Klebsiella pneumoniae
GCA_001904115.4	MPYQ00000000		SAMN05956138	CRK0116	Klebsiella pneumoniae
GCA_001903445.4	MPWQ00000000		SAMN05956107	CRK0147	Klebsiella pneumoniae
GCA_001903015.4	MPWK00000000		SAMN05956101	CRK0153	Klebsiella pneumoniae
GCA_001903795.4	MPYO00000000		SAMN05956136	CRK0118	Klebsiella pneumoniae
GCA_001904315.4	MPYY00000000		SAMN05956146	CRK0108	Klebsiella pneumoniae
GCA_001904155.4	MPZD00000000		SAMN05956125	CRK0129	Klebsiella pneumoniae
GCA_001902935.4	MPWY00000000		SAMN05956115	CRK0139	Klebsiella pneumoniae
GCA_001902965.4	MPWH00000000		SAMN05956098	CRK0156	Klebsiella pneumoniae
GCA_001903735.4	MPZJ00000000		SAMN05956131	CRK0123	Klebsiella pneumoniae
GCA_001904425.4	MPYA00000000		SAMN05956083	CRK0171	Klebsiella pneumoniae
GCA_001903215.4	MPXM00000000		SAMN05956069	CRK0185	Klebsiella pneumoniae
GCA_001903295.4	MPWV00000000		SAMN05956112	CRK0142	Klebsiella pneumoniae
GCA_001904375.4	MPYE00000000		SAMN05956087	CRK0167	Klebsiella pneumoniae
GCA_001903785.4	MPZE00000000		SAMN05956126	CRK0128	Klebsiella pneumoniae
GCA_001903535.4	MPXW00000000		SAMN05956079	CRK0175	Klebsiella pneumoniae
GCA_001904075.4	MPYT00000000		SAMN05956141	CRK0113	Klebsiella pneumoniae
GCA_001903515.4	MPWD00000000		SAMN05956094	CRK0160	Klebsiella pneumoniae
GCA_001904205.4	MPZI00000000		SAMN05956130	CRK0124	Klebsiella pneumoniae
GCA_001903035.4	MPWL00000000		SAMN05956102	CRK0152	Klebsiella pneumoniae
GCA_001904405.4	MPYC00000000		SAMN05956085	CRK0169	Klebsiella pneumoniae
GCA_001903385.4	MPWX00000000		SAMN05956114	CRK0140	Klebsiella pneumoniae
GCA_002185655.2	NFBJ00000000		SAMN06812609	CRK0065	Klebsiella pneumoniae
GCA_002185205.2	NFBW00000000		SAMN06812581	CRK0093	Klebsiella pneumoniae
GCA_002184995.2	NFAV00000000		SAMN06812595	CRK0079	Klebsiella pneumoniae
GCA_001904175.4	MPZH00000000		SAMN05956129	CRK0125	Klebsiella pneumoniae
GCA_001902855.4	MPXN00000000		SAMN05956070	CRK0184	Klebsiella pneumoniae
GCA_001903025.4	MPWJ00000000		SAMN05956100	CRK0154	Klebsiella pneumoniae
GCA_001902755.4	MPWN00000000		SAMN05956104	CRK0150	Klebsiella pneumoniae
GCA_001903865.4	MPXP00000000		SAMN05956072	CRK0182	Klebsiella pneumoniae
GCA_001904165.4	MPZG00000000		SAMN05956128	CRK0126	Klebsiella pneumoniae
GCA_001903465.4	MPWI00000000		SAMN05956099	CRK0155	Klebsiella pneumoniae
GCA_001904235.4	MPYM00000000		SAMN05956134	CRK0120	Klebsiella pneumoniae
GCA_001902775.4	MPWE00000000		SAMN05956095	CRK0159	Klebsiella pneumoniae
GCA_001902945.4	MPXB00000000		SAMN05956118	CRK0136	Klebsiella pneumoniae
GCA_001903205.4	MPXD00000000		SAMN05956120	CRK0134	Klebsiella pneumoniae
GCA_002184905.2	NFAE00000000		SAMN06812622	CRK0052	Klebsiella quasipneumoniae subsp. quasipneumoniae
GCA_002184465.2	NEYR00000000		SAMN06812672	CRK0002	Morganella morganii subsp. morganii
GCA_002185325.2	NEYV00000000		SAMN06812616	CRK0058	Morganella morganii subsp. morganii
GCA_002184635.2	NEYX00000000		SAMN06812618	CRK0056	Proteus mirabilis
GCA_001903595.4	MPYJ00000000		SAMN05956092	CRK0162	Raoultella planticola
GCA_002185265.2	NEYQ00000000		SAMN06812671	CRK0003	Serratia nematodiphila

SRA Data Details

Parameter	Value
Data volume, Gbases	237
Data volume, Tbytes	0.11

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Consortium on Resistance Against Carbapenems in Klebsiella pneumoniae and Other Enterobacteriaceae (CRACKLE) Whole Genome Sequencing

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