Campylobacter jejuni subsp. jejuni (ID 430314) - BioProject

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Accession: PRJNA430314 ID: 430314

Campylobacter jejuni subsp. jejuni

Genomic characterization of Campylobacter jejuni isolates from western jackdaws and game birds

See Genome Information for Campylobacter jejuni

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This study was performed to investigate the population structure and genomic characteristics of Campylobacter jejuni isolates from western jackdaws and game birds in Finland and to evaluate their relevance to public health.

Accession	PRJNA430314
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Campylobacter jejuni subsp. jejuni[Taxonomy ID: 32022] Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; Campylobacter jejuni subsp. jejuni
Publications	Kovanen S et al., "Population Genetics and Characterization of Campylobacter jejuni Isolates from Western Jackdaws and Game Birds in Finland.", Appl Environ Microbiol, 2019 Feb 15;85(4)
Submission	Registration date: 21-Dec-2018 University of Helsinki

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9662
WGS master	131
SRA Experiments	18
Protein Sequences	228314
Publications
PubMed	1
PMC	1
Other datasets
BioSample	149
Assembly	131

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

131
131

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003962275.1	PRCM00000000	SAMN08398765	CB294	Campylobacter jejuni
GCA_003962245.1	PRCJ00000000	SAMN08398768	CB297	Campylobacter jejuni
GCA_003962255.1	PRCF00000000	SAMN08398772	CB302	Campylobacter jejuni
GCA_003962225.1	PRCD00000000	SAMN08398774	CB305	Campylobacter jejuni
GCA_003962215.1	PRCC00000000	SAMN08398775	CB306	Campylobacter jejuni
GCA_003962145.1	PRBY00000000	SAMN08398779	CB310	Campylobacter jejuni
GCA_003962115.1	PRBP00000000	SAMN08398788	CB329	Campylobacter jejuni
GCA_003962175.1	PRCA00000000	SAMN08398777	CB308	Campylobacter jejuni
GCA_003962125.1	PRBQ00000000	SAMN08398787	CB322	Campylobacter jejuni
GCA_003962165.1	PRBR00000000	SAMN08398786	CB319	Campylobacter jejuni
GCA_003962075.1	PRBL00000000	SAMN08398792	CB334	Campylobacter jejuni
GCA_003962045.1	PRBE00000000	SAMN08398799	CB342	Campylobacter jejuni
GCA_003962055.1	PRBJ00000000	SAMN08398794	CB336	Campylobacter jejuni
GCA_003962025.1	PRBI00000000	SAMN08398795	CB338	Campylobacter jejuni
GCA_003962015.1	PRAQ00000000	SAMN08398813	CB358	Campylobacter jejuni
GCA_003961955.1	PRAL00000000	SAMN08398818	CB366	Campylobacter jejuni
GCA_003961965.1	PRAN00000000	SAMN08398816	CB361	Campylobacter jejuni
GCA_003961945.1	PRAK00000000	SAMN08398819	CB367	Campylobacter jejuni
GCA_003961935.1	PRAG00000000	SAMN08398823	CB371	Campylobacter jejuni
GCA_003961905.1	PRAC00000000	SAMN08398827	CB375	Campylobacter jejuni
GCA_003961875.1	PQZV00000000	SAMN08398834	CB382	Campylobacter jejuni
GCA_003961815.1	PQZK00000000	SAMN08398845	SO-12	Campylobacter jejuni
GCA_003961835.1	PQZU00000000	SAMN08398835	CB383	Campylobacter jejuni
GCA_003961855.1	PQZT00000000	SAMN08398836	CB384	Campylobacter jejuni
GCA_003961825.1	PQZF00000000	SAMN08398850	SO-21	Campylobacter jejuni
GCA_003961795.1	PQZD00000000	SAMN08398852	SO-26	Campylobacter jejuni
GCA_003961745.1	PQYY00000000	SAMN08398857	SO-4	Campylobacter jejuni
GCA_003961735.1	PQYR00000000	SAMN08398864	SO-68	Campylobacter jejuni
GCA_003961715.1	PQYT00000000	SAMN08398862	SO-64	Campylobacter jejuni
GCA_003961695.1	PQYN00000000	SAMN08398868	SO-74	Campylobacter jejuni
GCA_003961705.1	PQYQ00000000	SAMN08398865	SO-71	Campylobacter jejuni
GCA_003961665.1	PQYL00000000	SAMN08398870	SO-76	Campylobacter jejuni
GCA_003961625.1	PQYJ00000000	SAMN08398872	SO-8	Campylobacter jejuni
GCA_003961595.1	PQYE00000000	SAMN08398877	SO-96	Campylobacter jejuni
GCA_003961605.1	PQYI00000000	SAMN08398873	SO-80	Campylobacter jejuni
GCA_003961565.1	PQYB00000000	SAMN08398880	SS7R	Campylobacter jejuni
GCA_003961615.1	PQYG00000000	SAMN08398875	SO-89	Campylobacter jejuni
GCA_003961535.1	PQYA00000000	SAMN08398881	FA4	Campylobacter jejuni
GCA_003961515.1	PQXX00000000	SAMN08398884	FA46	Campylobacter jejuni
GCA_003961505.1	PQXU00000000	SAMN08398887	FA71	Campylobacter jejuni
GCA_003961465.1	PRCR00000000	SAMN08398760	CB288	Campylobacter jejuni
GCA_003961495.1	PQXT00000000	SAMN08398888	FA97	Campylobacter jejuni
GCA_003961435.1	PRCQ00000000	SAMN08398761	CB289	Campylobacter jejuni
GCA_003961365.1	PRCL00000000	SAMN08398766	CB295	Campylobacter jejuni
GCA_003961425.1	PRCP00000000	SAMN08398762	CB290	Campylobacter jejuni
GCA_003961415.1	PRCO00000000	SAMN08398763	CB291	Campylobacter jejuni
GCA_003961385.1	PRCN00000000	SAMN08398764	CB293	Campylobacter jejuni
GCA_003961335.1	PRCK00000000	SAMN08398767	CB296	Campylobacter jejuni
GCA_003961325.1	PRCI00000000	SAMN08398769	CB299	Campylobacter jejuni
GCA_003961315.1	PRCH00000000	SAMN08398770	CB300	Campylobacter jejuni
GCA_003961225.1	PRCB00000000	SAMN08398776	CB307	Campylobacter jejuni
GCA_003961245.1	PRCE00000000	SAMN08398773	CB304	Campylobacter jejuni
GCA_003961235.1	PRBZ00000000	SAMN08398778	CB309	Campylobacter jejuni
GCA_003961275.1	PRCG00000000	SAMN08398771	CB301	Campylobacter jejuni
GCA_003961215.1	PRBX00000000	SAMN08398780	CB311	Campylobacter jejuni
GCA_003961185.1	PRBW00000000	SAMN08398781	CB312	Campylobacter jejuni
GCA_003961135.1	PRBT00000000	SAMN08398784	CB317	Campylobacter jejuni
GCA_003961175.1	PRBV00000000	SAMN08398782	CB313	Campylobacter jejuni
GCA_003961095.1	PRBS00000000	SAMN08398785	CB318	Campylobacter jejuni
GCA_003961145.1	PRBU00000000	SAMN08398783	CB316	Campylobacter jejuni
GCA_003961055.1	PRBM00000000	SAMN08398791	CB333	Campylobacter jejuni
GCA_003961085.1	PRBO00000000	SAMN08398789	CB331	Campylobacter jejuni
GCA_003961005.1	PRBH00000000	SAMN08398796	CB339	Campylobacter jejuni
GCA_003961035.1	PRBK00000000	SAMN08398793	CB335	Campylobacter jejuni
GCA_003960995.1	PRBG00000000	SAMN08398797	CB340	Campylobacter jejuni
GCA_003960945.1	PRBD00000000	SAMN08398800	CB343	Campylobacter jejuni
GCA_003961045.1	PRBN00000000	SAMN08398790	CB332	Campylobacter jejuni
GCA_003960935.1	PRBF00000000	SAMN08398798	CB341	Campylobacter jejuni
GCA_003960865.1	PRBA00000000	SAMN08398803	CB346	Campylobacter jejuni
GCA_003960895.1	PRBB00000000	SAMN08398802	CB345	Campylobacter jejuni
GCA_003960955.1	PRBC00000000	SAMN08398801	CB344	Campylobacter jejuni
GCA_003960855.1	PRAZ00000000	SAMN08398804	CB347	Campylobacter jejuni
GCA_003960845.1	PRAX00000000	SAMN08398806	CB349	Campylobacter jejuni
GCA_003960835.1	PRAY00000000	SAMN08398805	CB348	Campylobacter jejuni
GCA_003960795.1	PRAW00000000	SAMN08398807	CB350	Campylobacter jejuni
GCA_003960755.1	PRAU00000000	SAMN08398809	CB353	Campylobacter jejuni
GCA_003960775.1	PRAV00000000	SAMN08398808	CB352	Campylobacter jejuni
GCA_003960735.1	PRAS00000000	SAMN08398811	CB355	Campylobacter jejuni
GCA_003960665.1	PRAP00000000	SAMN08398814	CB359	Campylobacter jejuni
GCA_003960745.1	PRAT00000000	SAMN08398810	CB354	Campylobacter jejuni
GCA_003960705.1	PRAR00000000	SAMN08398812	CB357	Campylobacter jejuni
GCA_003960655.1	PRAO00000000	SAMN08398815	CB360	Campylobacter jejuni
GCA_003960645.1	PRAM00000000	SAMN08398817	CB363	Campylobacter jejuni
GCA_003960625.1	PRAJ00000000	SAMN08398820	CB368	Campylobacter jejuni
GCA_003960595.1	PRAH00000000	SAMN08398822	CB370	Campylobacter jejuni
GCA_003960585.1	PRAI00000000	SAMN08398821	CB369	Campylobacter jejuni
GCA_003960545.1	PRAD00000000	SAMN08398826	CB374	Campylobacter jejuni
GCA_003960575.1	PRAF00000000	SAMN08398824	CB372	Campylobacter jejuni
GCA_003960535.1	PRAE00000000	SAMN08398825	CB373	Campylobacter jejuni
GCA_003960495.1	PRAB00000000	SAMN08398828	CB376	Campylobacter jejuni
GCA_003960475.1	PRAA00000000	SAMN08398829	CB377	Campylobacter jejuni
GCA_003960485.1	PQZZ00000000	SAMN08398830	CB378	Campylobacter jejuni
GCA_003960445.1	PQZY00000000	SAMN08398831	CB379	Campylobacter jejuni
GCA_003960435.1	PQZX00000000	SAMN08398832	CB380	Campylobacter jejuni
GCA_003960375.1	PQZS00000000	SAMN08398837	CB385	Campylobacter jejuni
GCA_003960385.1	PQZR00000000	SAMN08398838	CB386	Campylobacter jejuni
GCA_003960395.1	PQZW00000000	SAMN08398833	CB381	Campylobacter jejuni
GCA_003960345.1	PQZQ00000000	SAMN08398839	CB387	Campylobacter jejuni
GCA_003960305.1	PQZP00000000	SAMN08398840	CB388	Campylobacter jejuni
GCA_003960295.1	PQZO00000000	SAMN08398841	CB389	Campylobacter jejuni
GCA_003960275.1	PQZM00000000	SAMN08398843	CB391	Campylobacter jejuni
GCA_003960285.1	PQZN00000000	SAMN08398842	CB390	Campylobacter jejuni
GCA_003960215.1	PQZI00000000	SAMN08398847	SO-16	Campylobacter jejuni
GCA_003960235.1	PQZL00000000	SAMN08398844	CB393	Campylobacter jejuni
GCA_003960175.1	PQZH00000000	SAMN08398848	SO-17	Campylobacter jejuni
GCA_003960225.1	PQZJ00000000	SAMN08398846	SO-14	Campylobacter jejuni
GCA_003960185.1	PQZG00000000	SAMN08398849	SO-19	Campylobacter jejuni
GCA_003960145.1	PQZC00000000	SAMN08398853	SO-28	Campylobacter jejuni
GCA_003960135.1	PQZE00000000	SAMN08398851	SO-22	Campylobacter jejuni
GCA_003960085.1	PQZA00000000	SAMN08398855	SO-37	Campylobacter jejuni
GCA_003960095.1	PQZB00000000	SAMN08398854	SO-29	Campylobacter jejuni
GCA_003960075.1	PQYZ00000000	SAMN08398856	SO-39	Campylobacter jejuni
GCA_003960045.1	PQYX00000000	SAMN08398858	SO-49	Campylobacter jejuni
GCA_003960035.1	PQYW00000000	SAMN08398859	SO-50	Campylobacter jejuni
GCA_003959995.1	PQYV00000000	SAMN08398860	SO-54	Campylobacter jejuni
GCA_003959975.1	PQYP00000000	SAMN08398866	SO-72	Campylobacter jejuni
GCA_003959945.1	PQYU00000000	SAMN08398861	SO-55	Campylobacter jejuni
GCA_003959965.1	PQYS00000000	SAMN08398863	SO-67	Campylobacter jejuni
GCA_003959935.1	PQYO00000000	SAMN08398867	SO-73	Campylobacter jejuni
GCA_003959865.1	PQYD00000000	SAMN08398878	SS5R	Campylobacter jejuni
GCA_003959915.1	PQYM00000000	SAMN08398869	SO-75	Campylobacter jejuni
GCA_003959845.1	PQYH00000000	SAMN08398874	SO-85	Campylobacter jejuni
GCA_003959855.1	PQYK00000000	SAMN08398871	SO-79	Campylobacter jejuni
GCA_003959815.1	PQYC00000000	SAMN08398879	SS6R	Campylobacter jejuni
GCA_003959835.1	PQYF00000000	SAMN08398876	SO-92	Campylobacter jejuni
GCA_003959765.1	PQXZ00000000	SAMN08398882	FA5	Campylobacter jejuni
GCA_003959745.1	PQXW00000000	SAMN08398885	FA61	Campylobacter jejuni
GCA_003959725.1	PQXV00000000	SAMN08398886	FA63	Campylobacter jejuni
GCA_003959755.1	PQXY00000000	SAMN08398883	FA45	Campylobacter jejuni
GCA_003962465.1	PRCT00000000	SAMN08398758	CB286	Campylobacter jejuni
GCA_003962455.1	PRCS00000000	SAMN08398759	CB287	Campylobacter jejuni

SRA Data Details

Parameter	Value
Data volume, Gbases	2
Data volume, Mbytes	776

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Campylobacter jejuni subsp. jejuni

Genomic characterization of Campylobacter jejuni isolates from western jackdaws and game birds

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