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Accession: PRJDB7714 ID: 507561

Clostridioides difficile

Draft whole-genome sequencing of Clostridioides (Clostridium) difficile strains isolalted in Japan

See Genome Information for Clostridioides difficile
We sequenced draft whole-genome sequencing of Clostridioides (Clostridium) difficile strains isolated in Japan. More...
AccessionPRJDB7714
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismClostridioides difficile[Taxonomy ID: 1496]
Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile
SubmissionRegistration date: 29-Jan-2019
Toho University
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)62608
WGS master285
Other datasets
BioSample288
Assembly285
Assembly details:
Assembly levelNumber of Assemblies
282
3
285
AssemblyLevelWGSBioSampleTaxonomy
GCA_004313885.1ScaffoldBINF00000000SAMD00155794
GCA_004313865.1ScaffoldBINE00000000SAMD00155793
GCA_004313845.1ScaffoldBIND00000000SAMD00155792
GCA_004313785.1ScaffoldBINA00000000SAMD00155789
GCA_004313745.1ScaffoldBIMY00000000SAMD00155787
GCA_004313825.1ScaffoldBINC00000000SAMD00155791
GCA_004313765.1ScaffoldBIMZ00000000SAMD00155788
GCA_004319885.1ScaffoldBIXK00000000SAMD00156062
GCA_004319865.1ScaffoldBIXA00000000SAMD00156051
GCA_004319845.1ScaffoldBIWL00000000SAMD00156036
GCA_004319825.1ScaffoldBIWD00000000SAMD00156028
GCA_004319805.1ScaffoldBITJ00000000SAMD00155955
GCA_004319425.1ScaffoldBIXW00000000SAMD00156074
GCA_004319405.1ScaffoldBIXV00000000SAMD00156073
GCA_004319385.1ScaffoldBIXU00000000SAMD00156072
GCA_004319365.1ScaffoldBIXT00000000SAMD00156071
GCA_004319345.1ScaffoldBIXS00000000SAMD00156070
GCA_004319325.1ScaffoldBIXR00000000SAMD00156069
GCA_004319305.1ScaffoldBIXQ00000000SAMD00156068
GCA_004319285.1ScaffoldBIXP00000000SAMD00156067
GCA_004319265.1ScaffoldBIXO00000000SAMD00156066
GCA_004319245.1ScaffoldBIXN00000000SAMD00156065
GCA_004319225.1ScaffoldBIXM00000000SAMD00156064
GCA_004319205.1ScaffoldBIXL00000000SAMD00156063
GCA_004319165.1ScaffoldBIXJ00000000SAMD00156061
GCA_004319145.1ScaffoldBIXI00000000SAMD00156060
GCA_004319125.1ScaffoldBIXH00000000SAMD00156059
GCA_004319105.1ScaffoldBIXG00000000SAMD00156058
GCA_004319085.1ScaffoldBIXF00000000SAMD00156057
GCA_004319065.1ScaffoldBIXE00000000SAMD00156056
GCA_004319045.1ScaffoldBIXD00000000SAMD00156054
GCA_004319025.1ScaffoldBIXC00000000SAMD00156053
GCA_004319005.1ScaffoldBIXB00000000SAMD00156052
GCA_004318965.1ScaffoldBIWZ00000000SAMD00156050
GCA_004318945.1ScaffoldBIWY00000000SAMD00156049
GCA_004318925.1ScaffoldBIWX00000000SAMD00156048
GCA_004318905.1ContigBIWW00000000SAMD00156047
GCA_004318885.1ScaffoldBIWV00000000SAMD00156046
GCA_004318865.1ScaffoldBIWU00000000SAMD00156045
GCA_004318845.1ScaffoldBIWT00000000SAMD00156044
GCA_004318825.1ScaffoldBIWS00000000SAMD00156043
GCA_004318805.1ScaffoldBIWR00000000SAMD00156042
GCA_004318785.1ScaffoldBIWQ00000000SAMD00156041
GCA_004318765.1ScaffoldBIWP00000000SAMD00156040
GCA_004318745.1ScaffoldBIWO00000000SAMD00156039
GCA_004318725.1ScaffoldBIWN00000000SAMD00156038
GCA_004318705.1ScaffoldBIWM00000000SAMD00156037
GCA_004318665.1ScaffoldBIWK00000000SAMD00156035
GCA_004318645.1ScaffoldBIWJ00000000SAMD00156034
GCA_004318625.1ScaffoldBIWI00000000SAMD00156033
GCA_004318605.1ScaffoldBIWH00000000SAMD00156032
GCA_004318585.1ContigBIWG00000000SAMD00156031
GCA_004318565.1ScaffoldBIWF00000000SAMD00156030
GCA_004318545.1ScaffoldBIWE00000000SAMD00156029
GCA_004318505.1ScaffoldBIWC00000000SAMD00156027
GCA_004318485.1ScaffoldBIWB00000000SAMD00156026
GCA_004318465.1ScaffoldBIWA00000000SAMD00156025
GCA_004318445.1ScaffoldBIVZ00000000SAMD00156024
GCA_004318425.1ScaffoldBIVY00000000SAMD00156023
GCA_004318405.1ScaffoldBIVX00000000SAMD00156022
GCA_004318385.1ScaffoldBIVW00000000SAMD00156021
GCA_004318365.1ScaffoldBIVV00000000SAMD00156020
GCA_004318345.1ScaffoldBIVU00000000SAMD00156019
GCA_004318325.1ScaffoldBIVT00000000SAMD00156018
GCA_004318305.1ScaffoldBIVS00000000SAMD00156017
GCA_004318285.1ScaffoldBIVR00000000SAMD00156016
GCA_004318265.1ScaffoldBIVQ00000000SAMD00156015
GCA_004318245.1ScaffoldBIVP00000000SAMD00156014
GCA_004318225.1ScaffoldBIVO00000000SAMD00156013
GCA_004318205.1ScaffoldBIVN00000000SAMD00156012
GCA_004318185.1ScaffoldBIVM00000000SAMD00156011
GCA_004318165.1ScaffoldBIVL00000000SAMD00156009
GCA_004318145.1ScaffoldBIVK00000000SAMD00156008
GCA_004318125.1ScaffoldBIVJ00000000SAMD00156007
GCA_004318105.1ScaffoldBIVI00000000SAMD00156006
GCA_004318085.1ScaffoldBIVH00000000SAMD00156005
GCA_004318065.1ScaffoldBIVG00000000SAMD00156004
GCA_004318045.1ScaffoldBIVF00000000SAMD00156003
GCA_004318025.1ScaffoldBIVE00000000SAMD00156002
GCA_004318005.1ScaffoldBIVD00000000SAMD00156001
GCA_004317985.1ScaffoldBIVC00000000SAMD00156000
GCA_004317965.1ScaffoldBIVB00000000SAMD00155999
GCA_004317945.1ScaffoldBIVA00000000SAMD00155998
GCA_004317925.1ScaffoldBIUZ00000000SAMD00155997
GCA_004317905.1ScaffoldBIUY00000000SAMD00155996
GCA_004317885.1ScaffoldBIUX00000000SAMD00155995
GCA_004317865.1ScaffoldBIUW00000000SAMD00155994
GCA_004317845.1ScaffoldBIUV00000000SAMD00155993
GCA_004317825.1ScaffoldBIUU00000000SAMD00155992
GCA_004317805.1ScaffoldBIUT00000000SAMD00155991
GCA_004317785.1ScaffoldBIUS00000000SAMD00155990
GCA_004317765.1ScaffoldBIUR00000000SAMD00155989
GCA_004317745.1ScaffoldBIUQ00000000SAMD00155988
GCA_004317725.1ScaffoldBIUP00000000SAMD00155987
GCA_004317705.1ScaffoldBIUO00000000SAMD00155986
GCA_004317685.1ScaffoldBIUN00000000SAMD00155985
GCA_004317665.1ScaffoldBIUM00000000SAMD00155984
GCA_004317645.1ScaffoldBIUL00000000SAMD00155983
GCA_004317625.1ScaffoldBIUK00000000SAMD00155982
GCA_004317605.1ScaffoldBIUJ00000000SAMD00155981
GCA_004317585.1ScaffoldBIUI00000000SAMD00155980
GCA_004317565.1ScaffoldBIUH00000000SAMD00155979
GCA_004317545.1ScaffoldBIUG00000000SAMD00155978
GCA_004317525.1ScaffoldBIUF00000000SAMD00155977
GCA_004317505.1ScaffoldBIUE00000000SAMD00155976
GCA_004317485.1ScaffoldBIUD00000000SAMD00155975
GCA_004317465.1ContigBIUC00000000SAMD00155974
GCA_004317445.1ScaffoldBIUB00000000SAMD00155973
GCA_004317425.1ScaffoldBIUA00000000SAMD00155972
GCA_004317405.1ScaffoldBITZ00000000SAMD00155971
GCA_004317385.1ScaffoldBITY00000000SAMD00155970
GCA_004317365.1ScaffoldBITX00000000SAMD00155969
GCA_004317345.1ScaffoldBITW00000000SAMD00155968
GCA_004317325.1ScaffoldBITV00000000SAMD00155967
GCA_004317305.1ScaffoldBITU00000000SAMD00155966
GCA_004317285.1ScaffoldBITT00000000SAMD00155965
GCA_004317265.1ScaffoldBITS00000000SAMD00155964
GCA_004317245.1ScaffoldBITR00000000SAMD00155963
GCA_004317225.1ScaffoldBITQ00000000SAMD00155962
GCA_004317205.1ScaffoldBITP00000000SAMD00155961
GCA_004317185.1ScaffoldBITO00000000SAMD00155960
GCA_004317165.1ScaffoldBITN00000000SAMD00155959
GCA_004317145.1ScaffoldBITM00000000SAMD00155958
GCA_004317125.1ScaffoldBITL00000000SAMD00155957
GCA_004317105.1ScaffoldBITK00000000SAMD00155956
GCA_004317065.1ScaffoldBITI00000000SAMD00155954
GCA_004317045.1ScaffoldBITH00000000SAMD00155953
GCA_004317025.1ScaffoldBITG00000000SAMD00155952
GCA_004317005.1ScaffoldBITF00000000SAMD00155951
GCA_004316985.1ScaffoldBITE00000000SAMD00155950
GCA_004316965.1ScaffoldBITD00000000SAMD00155949
GCA_004316945.1ScaffoldBITC00000000SAMD00155948
GCA_004316925.1ScaffoldBITB00000000SAMD00155947
GCA_004316905.1ScaffoldBITA00000000SAMD00155946
GCA_004316885.1ScaffoldBISZ00000000SAMD00155945
GCA_004316865.1ScaffoldBISY00000000SAMD00155944
GCA_004316845.1ScaffoldBISX00000000SAMD00155943
GCA_004316825.1ScaffoldBISW00000000SAMD00155942
GCA_004316805.1ScaffoldBISV00000000SAMD00155941
GCA_004316785.1ScaffoldBISU00000000SAMD00155940
GCA_004316765.1ScaffoldBIST00000000SAMD00155939
GCA_004316745.1ScaffoldBISS00000000SAMD00155938
GCA_004316725.1ScaffoldBISR00000000SAMD00155937
GCA_004316705.1ScaffoldBISQ00000000SAMD00155936
GCA_004316685.1ScaffoldBISP00000000SAMD00155935
GCA_004316665.1ScaffoldBISO00000000SAMD00155934
GCA_004316645.1ScaffoldBISN00000000SAMD00155933
GCA_004316625.1ScaffoldBISM00000000SAMD00155932
GCA_004316605.1ScaffoldBISL00000000SAMD00155931
GCA_004316585.1ScaffoldBISK00000000SAMD00155930
GCA_004316565.1ScaffoldBISJ00000000SAMD00155929
GCA_004316545.1ScaffoldBISI00000000SAMD00155928
GCA_004316525.1ScaffoldBISH00000000SAMD00155927
GCA_004316505.1ScaffoldBISG00000000SAMD00155926
GCA_004316485.1ScaffoldBISF00000000SAMD00155925
GCA_004316465.1ScaffoldBISE00000000SAMD00155924
GCA_004316445.1ScaffoldBISD00000000SAMD00155923
GCA_004316425.1ScaffoldBISC00000000SAMD00155922
GCA_004316405.1ScaffoldBISB00000000SAMD00155921
GCA_004316385.1ScaffoldBISA00000000SAMD00155920
GCA_004316365.1ScaffoldBIRZ00000000SAMD00155919
GCA_004316345.1ScaffoldBIRY00000000SAMD00155918
GCA_004316325.1ScaffoldBIRX00000000SAMD00155917
GCA_004316305.1ScaffoldBIRW00000000SAMD00155916
GCA_004316285.1ScaffoldBIRV00000000SAMD00155915
GCA_004316265.1ScaffoldBIRU00000000SAMD00155914
GCA_004316245.1ScaffoldBIRT00000000SAMD00155913
GCA_004316225.1ScaffoldBIRS00000000SAMD00155912
GCA_004316205.1ScaffoldBIRR00000000SAMD00155911
GCA_004316185.1ScaffoldBIRQ00000000SAMD00155910
GCA_004316165.1ScaffoldBIRP00000000SAMD00155909
GCA_004316145.1ScaffoldBIRO00000000SAMD00155908
GCA_004316125.1ScaffoldBIRN00000000SAMD00155907
GCA_004316105.1ScaffoldBIRM00000000SAMD00155906
GCA_004316085.1ScaffoldBIRL00000000SAMD00155905
GCA_004316065.1ScaffoldBIRK00000000SAMD00155904
GCA_004316045.1ScaffoldBIRJ00000000SAMD00155903
GCA_004316025.1ScaffoldBIRI00000000SAMD00155902
GCA_004316005.1ScaffoldBIRH00000000SAMD00155901
GCA_004315965.1ScaffoldBIRF00000000SAMD00155899
GCA_004315985.1ScaffoldBIRG00000000SAMD00155900
GCA_004315925.1ScaffoldBIRD00000000SAMD00155897
GCA_004315945.1ScaffoldBIRE00000000SAMD00155898
GCA_004315905.1ScaffoldBIRC00000000SAMD00155896
GCA_004315885.1ScaffoldBIRB00000000SAMD00155895
GCA_004315865.1ScaffoldBIRA00000000SAMD00155894
GCA_004315845.1ScaffoldBIQZ00000000SAMD00155893
GCA_004315825.1ScaffoldBIQY00000000SAMD00155892
GCA_004315805.1ScaffoldBIQX00000000SAMD00155891
GCA_004315785.1ScaffoldBIQW00000000SAMD00155890
GCA_004315765.1ScaffoldBIQV00000000SAMD00155889
GCA_004315745.1ScaffoldBIQU00000000SAMD00155888
GCA_004315725.1ScaffoldBIQT00000000SAMD00155887
GCA_004315705.1ScaffoldBIQS00000000SAMD00155886
GCA_004315685.1ScaffoldBIQR00000000SAMD00155885
GCA_004315665.1ScaffoldBIQQ00000000SAMD00155884
GCA_004315645.1ScaffoldBIQP00000000SAMD00155883
GCA_004315625.1ScaffoldBIQO00000000SAMD00155882
GCA_004315605.1ScaffoldBIQN00000000SAMD00155881
GCA_004315585.1ScaffoldBIQM00000000SAMD00155880
GCA_004315565.1ScaffoldBIQL00000000SAMD00155879
GCA_004315545.1ScaffoldBIQK00000000SAMD00155878
GCA_004315525.1ScaffoldBIQJ00000000SAMD00155877
GCA_004315505.1ScaffoldBIQI00000000SAMD00155876
GCA_004315485.1ScaffoldBIQH00000000SAMD00155875
GCA_004315465.1ScaffoldBIQG00000000SAMD00155874
GCA_004315445.1ScaffoldBIQF00000000SAMD00155873
GCA_004315425.1ScaffoldBIQE00000000SAMD00155872
GCA_004315405.1ScaffoldBIQD00000000SAMD00155871
GCA_004315385.1ScaffoldBIQC00000000SAMD00155870
GCA_004315365.1ScaffoldBIQB00000000SAMD00155869
GCA_004315345.1ScaffoldBIQA00000000SAMD00155868
GCA_004315325.1ScaffoldBIPZ00000000SAMD00155867
GCA_004315305.1ScaffoldBIPY00000000SAMD00155866
GCA_004315285.1ScaffoldBIPX00000000SAMD00155865
GCA_004315265.1ScaffoldBIPW00000000SAMD00155864
GCA_004315245.1ScaffoldBIPV00000000SAMD00155863
GCA_004315225.1ScaffoldBIPU00000000SAMD00155862
GCA_004315205.1ScaffoldBIPT00000000SAMD00155861
GCA_004315185.1ScaffoldBIPS00000000SAMD00155860
GCA_004315165.1ScaffoldBIPR00000000SAMD00155859
GCA_004315145.1ScaffoldBIPQ00000000SAMD00155858
GCA_004315125.1ScaffoldBIPP00000000SAMD00155857
GCA_004315105.1ScaffoldBIPO00000000SAMD00155856
GCA_004315085.1ScaffoldBIPN00000000SAMD00155855
GCA_004315065.1ScaffoldBIPM00000000SAMD00155854
GCA_004315045.1ScaffoldBIPL00000000SAMD00155853
GCA_004315025.1ScaffoldBIPK00000000SAMD00155852
GCA_004315005.1ScaffoldBIPJ00000000SAMD00155851
GCA_004314985.1ScaffoldBIPI00000000SAMD00155850
GCA_004314965.1ScaffoldBIPH00000000SAMD00155849
GCA_004314945.1ScaffoldBIPG00000000SAMD00155848
GCA_004314925.1ScaffoldBIPF00000000SAMD00155847
GCA_004314905.1ScaffoldBIPE00000000SAMD00155846
GCA_004314885.1ScaffoldBIPD00000000SAMD00155845
GCA_004314865.1ScaffoldBIPC00000000SAMD00155844
GCA_004314845.1ScaffoldBIPB00000000SAMD00155843
GCA_004314825.1ScaffoldBIPA00000000SAMD00155842
GCA_004314805.1ScaffoldBIOZ00000000SAMD00155841
GCA_004314785.1ScaffoldBIOY00000000SAMD00155840
GCA_004314765.1ScaffoldBIOX00000000SAMD00155839
GCA_004314745.1ScaffoldBIOW00000000SAMD00155838
GCA_004314725.1ScaffoldBIOV00000000SAMD00155837
GCA_004314705.1ScaffoldBIOU00000000SAMD00155836
GCA_004314685.1ScaffoldBIOT00000000SAMD00155835
GCA_004314665.1ScaffoldBIOS00000000SAMD00155834
GCA_004314645.1ScaffoldBIOR00000000SAMD00155833
GCA_004314625.1ScaffoldBIOQ00000000SAMD00155832
GCA_004314605.1ScaffoldBIOP00000000SAMD00155831
GCA_004314585.1ScaffoldBIOO00000000SAMD00155830
GCA_004314565.1ScaffoldBION00000000SAMD00155829
GCA_004314545.1ScaffoldBIOM00000000SAMD00155828
GCA_004314525.1ScaffoldBIOL00000000SAMD00155827
GCA_004314505.1ScaffoldBIOK00000000SAMD00155826
GCA_004314485.1ScaffoldBIOJ00000000SAMD00155825
GCA_004314465.1ScaffoldBIOI00000000SAMD00155824
GCA_004314445.1ScaffoldBIOH00000000SAMD00155823
GCA_004314425.1ScaffoldBIOG00000000SAMD00155822
GCA_004314405.1ScaffoldBIOF00000000SAMD00155821
GCA_004314385.1ScaffoldBIOE00000000SAMD00155820
GCA_004314365.1ScaffoldBIOD00000000SAMD00155819
GCA_004314345.1ScaffoldBIOC00000000SAMD00155818
GCA_004314325.1ScaffoldBIOB00000000SAMD00155817
GCA_004314305.1ScaffoldBIOA00000000SAMD00155816
GCA_004314285.1ScaffoldBINZ00000000SAMD00155815
GCA_004314265.1ScaffoldBINY00000000SAMD00155814
GCA_004314245.1ScaffoldBINX00000000SAMD00155813
GCA_004314225.1ScaffoldBINW00000000SAMD00155812
GCA_004314205.1ScaffoldBINV00000000SAMD00155811
GCA_004314185.1ScaffoldBINU00000000SAMD00155810
GCA_004314165.1ScaffoldBINT00000000SAMD00155809
GCA_004314145.1ScaffoldBINS00000000SAMD00155808
GCA_004314125.1ScaffoldBINR00000000SAMD00155807
GCA_004314105.1ScaffoldBINQ00000000SAMD00155806
GCA_004314085.1ScaffoldBINP00000000SAMD00155805
GCA_004314065.1ScaffoldBINO00000000SAMD00155804
GCA_004314045.1ScaffoldBINN00000000SAMD00155802
GCA_004314025.1ScaffoldBINM00000000SAMD00155801
GCA_004314005.1ScaffoldBINL00000000SAMD00155800
GCA_004313985.1ScaffoldBINK00000000SAMD00155799
GCA_004313905.1ScaffoldBING00000000SAMD00155795
GCA_004313945.1ScaffoldBINI00000000SAMD00155797
GCA_004313925.1ScaffoldBINH00000000SAMD00155796
GCA_004313965.1ScaffoldBINJ00000000SAMD00155798
GCA_004313805.1ScaffoldBINB00000000SAMD00155790

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