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Accession: PRJEB2101 ID: 203737

Clostridium difficile Ribotype Reference Genome Project

For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/clostridium-difficile. More...
AccessionPRJEB2101
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 21-May-2013
Wellcome Sanger Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)5764
WGS master86
SRA Experiments102
Protein Sequences324257
Other datasets
BioSample102
Assembly86
Assembly details:
Assembly levelNumber of Assemblies
21
65
86
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_901004605.1ContigCAAJVJ000000000SAMEA1402402
lsh35
GCA_901004585.1ContigCAAJVG000000000SAMEA1402362
lsh32
GCA_901004575.1ContigCAAJVM000000000SAMEA1402414
lsh36
GCA_901004565.1ContigCAAJVE000000000SAMEA1402427
Den002
GCA_901004545.1ContigCAAJVD000000000SAMEA1402378
lsh24
GCA_901004555.1ContigCAAJVH000000000SAMEA1402428
lsh28
GCA_901004535.1ScaffoldCAAJVF000000000SAMEA1402363
lsh25
GCA_901004525.1ContigCAAJVB000000000SAMEA1402359
lsh22
GCA_901004515.1ScaffoldCAAJVC000000000SAMEA1402336
lsh20
GCA_901004505.1ContigCAAJUZ000000000SAMEA1402368
lsh17
GCA_901004495.1ContigCAAJVA000000000SAMEA1402382
lsh16
GCA_901004485.1ContigCAAJUX000000000SAMEA1402410
lsh13
GCA_901004475.1ContigCAAJUY000000000SAMEA1402425
lsh15
GCA_901004695.1ContigCAAJVS000000000SAMEA1402391
tl293
GCA_901004685.1ContigCAAJVR000000000SAMEA1402377
Den010
GCA_901004675.1ContigCAAJVQ000000000SAMEA1402345
Den009
GCA_901004665.1ContigCAAJVP000000000SAMEA1402366
tl291
GCA_901004645.1ScaffoldCAAJVN000000000SAMEA1402404
Den004
GCA_901004635.1ContigCAAJVL000000000SAMEA1402357
Den008
GCA_901004655.1ContigCAAJVO000000000SAMEA1402417
Den007
GCA_901004625.1ContigCAAJVK000000000SAMEA1402372
Den005
GCA_901004615.1ContigCAAJVI000000000SAMEA1402369
lsh37
GCA_901004865.1ContigCAAJWK000000000SAMEA1402343
clo28
GCA_901004855.1ContigCAAJWI000000000SAMEA1402346
clo31
GCA_901004845.1ContigCAAJWH000000000SAMEA1402429
clo27
GCA_901004835.1ContigCAAJWC000000000SAMEA1402354
clo22
GCA_901004825.1ScaffoldCAAJWB000000000SAMEA1402375
clo23
GCA_901004805.1ContigCAAJWE000000000SAMEA1402421
clo19
GCA_901004795.1ContigCAAJWD000000000SAMEA1402389
clo24
GCA_901004815.1ContigCAAJWF000000000SAMEA1402338
clo21
GCA_901004785.1ContigCAAJWJ000000000SAMEA1402397
clo25
GCA_901004775.1ContigCAAJVZ000000000SAMEA1402412
clo18
GCA_901004765.1ContigCAAJWA000000000SAMEA1402413
clo17
GCA_901004755.1ContigCAAJVX000000000SAMEA1402400
clo11
GCA_901004745.1ContigCAAJVY000000000SAMEA1402361
clo14
GCA_901004735.1ContigCAAJVW000000000SAMEA1402385
clo13
GCA_901004725.1ContigCAAJVV000000000SAMEA1402398
tl294
GCA_901004715.1ContigCAAJVU000000000SAMEA1402388
clo10
GCA_901004705.1ScaffoldCAAJVT000000000SAMEA1402392
tl292
GCA_901005035.1ScaffoldCAAJWY000000000SAMEA1402426
clo09
GCA_901005025.1ContigCAAJXL000000000SAMEA1402420
clo08
GCA_901005015.1ScaffoldCAAJWU000000000SAMEA1402355
clo06
GCA_901005005.1ContigCAAJWV000000000SAMEA1402384
clo04
GCA_901004995.1ScaffoldCAAJWX000000000SAMEA1402351
clo07
GCA_901004985.1ContigCAAJWW000000000SAMEA1402339
clo05
GCA_901004975.1ContigCAAJWT000000000SAMEA1402393
lsh06
GCA_901004965.1ContigCAAJWR000000000SAMEA1402396
clo36
GCA_901004955.1ContigCAAJWQ000000000SAMEA1402383
lsh04
GCA_901004945.1ContigCAAJWO000000000SAMEA1402376
clo03
GCA_901004935.1ScaffoldCAAJWN000000000SAMEA1402374
lsh01
GCA_901004925.1ContigCAAJWP000000000SAMEA1402424
clo39
GCA_901004905.1ContigCAAJWM000000000SAMEA1402415
clo38
GCA_901004895.1ContigCAAJWS000000000SAMEA1402405
clo37
GCA_901004885.1ScaffoldCAAJWL000000000SAMEA1402356
clo30
GCA_901004875.1ScaffoldCAAJWG000000000SAMEA1402387
clo35
GCA_900687975.1ContigCAADAH000000000SAMEA1402394
clo15
GCA_900687965.1ContigCAADAJ000000000SAMEA1402403
clo16
GCA_900687955.1ContigCAADAI000000000SAMEA1402381
lsh33
GCA_900687935.1ContigCAADAF000000000SAMEA1402409
R711
GCA_900687925.1ContigCAADAE000000000SAMEA1402419
clo01
GCA_900687915.1ScaffoldCAADAG000000000SAMEA1402360
clo12
GCA_900687825.1ContigCAADAC000000000SAMEA1402344
lsh39
GCA_900687785.1ContigCAADAB000000000SAMEA1402347
lsh40
GCA_900687775.1ContigCAADAA000000000SAMEA1402358
lsh12
GCA_900687725.1ContigCAACZY000000000SAMEA1402390
lsh34
GCA_900687715.1ScaffoldCAACZZ000000000SAMEA1402386
lsh38
GCA_900687665.1ScaffoldCAACZV000000000SAMEA1402353
lsh30
GCA_900687645.1ContigCAACZX000000000SAMEA1402373
lsh31
GCA_900687655.1ContigCAACZW000000000SAMEA1402416
lsh27
GCA_900687625.1ScaffoldCAACZU000000000SAMEA1402401
lsh26
GCA_900687605.1ContigCAACZT000000000SAMEA1402340
lsh23
GCA_900687595.1ContigCAACZS000000000SAMEA1402348
lsh18
GCA_900687575.1ScaffoldCAADAD000000000SAMEA1402341
lsh21
GCA_900687565.1ScaffoldCAACZR000000000SAMEA1402423
lsh14
GCA_900688075.1ContigCAADAL000000000SAMEA1402407
clo02
GCA_900688665.1ScaffoldCAADAY000000000SAMEA1402334
lsh11
GCA_900688565.1ContigCAADAW000000000SAMEA1402379
lsh10
GCA_900688555.1ScaffoldCAADAX000000000SAMEA1402364
lsh09
GCA_900688315.1ContigCAADAS000000000SAMEA1402335
clo40
GCA_900688305.1ContigCAADAR000000000SAMEA1402349
clo41
GCA_900688265.1ScaffoldCAADAP000000000SAMEA1402371
lsh08
GCA_900688245.1ContigCAADAQ000000000SAMEA1402406
lsh07
GCA_900688205.1ContigCAADAN000000000SAMEA1402399
clo34
GCA_900688195.1ContigCAADAO000000000SAMEA1402380
clo33
GCA_900688105.1ScaffoldCAADAM000000000SAMEA1402365
clo32
GCA_900688085.1ContigCAADAK000000000SAMEA1402418
clo26
SRA Data Details
ParameterValue
Data volume, Gbases78
Data volume, Mbytes51408

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