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Accession: PRJNA510429 ID: 510429

Escherichia coli

esherishia coli ESBLs surveillance

See Genome Information for Escherichia coli
Genomic surveillance of ESBLs E. coli in Western NY
AccessionPRJNA510429
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 2-Apr-2019
URMC
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)20180
WGS master165
Protein Sequences820088
Other datasets
BioSample165
Assembly165
Assembly details:
Assembly levelNumber of Assemblies
5
160
165
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_004566405.1ContigRZGB00000000SAMN10620089
URMC_9
GCA_004566415.1ContigRZGC00000000SAMN10620161
URMC_90
GCA_004566675.1ContigRZFL00000000SAMN10620146
URMC_74
GCA_004566905.1ContigRZEW00000000SAMN10620132
URMC_60
GCA_004566395.1ScaffoldRZGG00000000SAMN10620165
URMC_94
GCA_004566375.1ContigRZGE00000000SAMN10620163
URMC_92
GCA_004567115.1ContigRZEF00000000SAMN10620115
URMC_40
GCA_004566535.1ContigRZFW00000000SAMN10620156
URMC_85
GCA_004566865.1ContigRZEY00000000SAMN10620134
URMC_62
GCA_004566875.1ContigRZEX00000000SAMN10620133
URMC_61
GCA_004566455.1ScaffoldRZGA00000000SAMN10620160
URMC_89
GCA_004566785.1ContigRZFD00000000SAMN10620139
URMC_67
GCA_004566565.1ContigRZFU00000000SAMN10620154
URMC_83
GCA_004566385.1ContigRZGI00000000SAMN10620167
URMC_96
GCA_004566555.1ContigRZFS00000000SAMN10620152
URMC_81
GCA_004566465.1ScaffoldRZFY00000000SAMN10620158
URMC_87
GCA_004566795.1ContigRZFB00000000SAMN10620137
URMC_65
GCA_004566965.1ContigRZER00000000SAMN10620128
URMC_56
GCA_004566595.1ContigRZFP00000000SAMN10620150
URMC_79
GCA_004566775.1ContigRZFF00000000SAMN10620141
URMC_69
GCA_004567045.1ContigRZEN00000000SAMN10620124
URMC_51
GCA_004567005.1ContigRZEP00000000SAMN10620126
URMC_53
GCA_004566685.1ContigRZFJ00000000SAMN10620144
URMC_72
GCA_004566665.1ContigRZFN00000000SAMN10620148
URMC_77
GCA_004566715.1ContigRZFI00000000SAMN10620143
URMC_71
GCA_004567255.1ContigRZDU00000000SAMN10620084
URMC_3
GCA_004566755.1ContigRZFH00000000SAMN10620142
URMC_70
GCA_004566915.1ContigRZEU00000000SAMN10620131
URMC_59
GCA_004566835.1ContigRZFA00000000SAMN10620136
URMC_64
GCA_004566645.1ContigRZFO00000000SAMN10620149
URMC_78
GCA_004566765.1ContigRZFG00000000SAMN10620087
URMC_7
GCA_004566895.1ContigRZEV00000000SAMN10620086
URMC_6
GCA_004566545.1ContigRZFV00000000SAMN10620155
URMC_84
GCA_004566985.1ScaffoldRZEQ00000000SAMN10620127
URMC_55
GCA_004567075.1ContigRZEK00000000SAMN10620121
URMC_48
GCA_004567365.1ContigRZFX00000000SAMN10620157
URMC_86
GCA_004567265.1ContigRZDR00000000SAMN10620103
URMC_25
GCA_004567055.1ContigRZEO00000000SAMN10620125
URMC_52
GCA_004567585.1ScaffoldRZET00000000SAMN10620130
URMC_58
GCA_004567715.1ContigRZEB00000000SAMN10620112
URMC_36
GCA_004567355.1ContigRZGH00000000SAMN10620166
URMC_95
GCA_004568205.1ContigRZDP00000000SAMN10620101
URMC_23
GCA_004567405.1ContigRZFT00000000SAMN10620153
URMC_82
GCA_004567815.1ContigRZDO00000000SAMN10620100
URMC_22
GCA_004566955.1ContigRZES00000000SAMN10620129
URMC_57
GCA_004567535.1ContigRZEZ00000000SAMN10620135
URMC_63
GCA_004567495.1ContigRZFE00000000SAMN10620140
URMC_68
GCA_004569675.1ContigRZAI00000000SAMN10620174
URMC_110
GCA_004567145.1ContigRZEC00000000SAMN10620113
URMC_37
GCA_004567185.1ContigRZDW00000000SAMN10620107
URMC_31
GCA_004568575.1ContigRZBJ00000000SAMN10620093
URMC_14
GCA_004567375.1ContigRZGD00000000SAMN10620162
URMC_91
GCA_004567565.1ContigRZEL00000000SAMN10620122
URMC_49
GCA_004569855.1ContigRZAH00000000SAMN10620173
URMC_109
GCA_004567275.1ContigRZDN00000000SAMN10620099
URMC_21
GCA_004567445.1ContigRZFM00000000SAMN10620147
URMC_76
GCA_004568035.1ContigRZCU00000000SAMN10620096
URMC_18
GCA_004567285.1ContigRZDQ00000000SAMN10620102
URMC_24
GCA_004568615.1ContigRZAK00000000SAMN10620176
URMC_112
GCA_004568145.1ContigRZCK00000000SAMN10620095
URMC_17
GCA_004567415.1ContigRZFR00000000SAMN10620151
URMC_80
GCA_004568935.1ContigRZAC00000000SAMN10620090
URMC_10
GCA_004569875.1ContigRZAF00000000SAMN10620171
URMC_107
GCA_004568895.1ContigRZAJ00000000SAMN10620175
URMC_111
GCA_004567805.1ContigRZDL00000000SAMN10620083
URMC_2
GCA_004569045.1ContigRZBZ00000000SAMN10620094
URMC_16
GCA_004567595.1ContigRZEJ00000000SAMN10620119
URMC_46
GCA_004567675.1ContigRZEG00000000SAMN10620116
URMC_41
GCA_004567695.1ContigRZED00000000SAMN10620114
URMC_39
GCA_004567505.1ContigRZFC00000000SAMN10620138
URMC_66
GCA_004567755.1ContigRZDT00000000SAMN10620105
URMC_28
GCA_004567745.1ContigRZDX00000000SAMN10620108
URMC_32
GCA_004567605.1ContigRZEI00000000SAMN10620118
URMC_43
GCA_004567895.1ContigRZDE00000000SAMN10620097
URMC_19
GCA_004567725.1ContigRZDY00000000SAMN10620109
URMC_33
GCA_004567225.1ContigRZDV00000000SAMN10620106
URMC_30
GCA_004567615.1ContigRZEH00000000SAMN10620117
URMC_42
GCA_004567175.1ContigRZDZ00000000SAMN10620110
URMC_34
GCA_004568225.1ContigRZDM00000000SAMN10620098
URMC_20
GCA_004569925.1ContigRZBC00000000SAMN10620092
URMC_13
GCA_004570035.1ContigRZAE00000000SAMN10620170
URMC_106
GCA_004569995.1ContigRZAR00000000SAMN10620091
URMC_12
GCA_004569745.1ContigRZAB00000000SAMN10620082
URMC_1
GCA_004569755.1ContigRZBE00000000
SAMN10625621
URMC_135
GCA_004569695.1ContigRZAG00000000
SAMN10620172
URMC_108
GCA_004569685.1ContigRZAO00000000
SAMN10625607
URMC_117
GCA_004568415.1ContigRZCO00000000
SAMN10625654
URMC_173
GCA_004569135.1ContigRZAQ00000000
SAMN10625609
URMC_119
GCA_004569175.1ContigRZAP00000000
SAMN10625608
URMC_118
GCA_004569095.1ContigRZBF00000000
SAMN10625622
URMC_136
GCA_004569165.1ContigRZAD00000000
SAMN10620169
URMC_105
GCA_004570025.1ContigRZAM00000000
SAMN10625605
URMC_115
GCA_004569965.1ContigRZAY00000000
SAMN10625616
URMC_126
GCA_004569955.1ContigRZBA00000000
SAMN10625618
URMC_128
GCA_004569915.1ContigRZBD00000000
SAMN10625620
URMC_130
GCA_004569665.1ContigRZBM00000000
SAMN10625628
URMC_142
GCA_004569905.1ContigRZBG00000000
SAMN10625623
URMC_137
GCA_004569765.1ContigRZAZ00000000
SAMN10625617
URMC_127
GCA_004569835.1ContigRZAU00000000
SAMN10625612
URMC_122
GCA_004569825.1ContigRZAV00000000
SAMN10625613
URMC_123
GCA_004569645.1ContigRZAS00000000
SAMN10625610
URMC_120
GCA_004569775.1ContigRZAW00000000
SAMN10625614
URMC_124
GCA_004568925.1ContigRZCH00000000
SAMN10625648
URMC_167
GCA_004569075.1ContigRZBK00000000
SAMN10625626
URMC_140
GCA_004568995.1ContigRZCF00000000
SAMN10625646
URMC_165
GCA_004569015.1ContigRZCA00000000
SAMN10625641
URMC_160
GCA_004568975.1ContigRZCD00000000
SAMN10625644
URMC_163
GCA_004568885.1ContigRZBB00000000
SAMN10625619
URMC_129
GCA_004568855.1ContigRZBH00000000
SAMN10625624
URMC_138
GCA_004568835.1ContigRZBI00000000
SAMN10625625
URMC_139
GCA_004568795.1ContigRZBN00000000
SAMN10625629
URMC_143
GCA_004568805.1ContigRZBL00000000
SAMN10625627
URMC_141
GCA_004568775.1ContigRZBS00000000
SAMN10625634
URMC_148
GCA_004568745.1ContigRZBU00000000
SAMN10625636
URMC_150
GCA_004568765.1ContigRZBR00000000
SAMN10625633
URMC_147
GCA_004568675.1ContigRZCI00000000
SAMN10625649
URMC_168
GCA_004568705.1ContigRZBV00000000
SAMN10625637
URMC_151
GCA_004568695.1ContigRZBY00000000
SAMN10625640
URMC_159
GCA_004568605.1ContigRZAT00000000
SAMN10625611
URMC_121
GCA_004568515.1ContigRZBQ00000000
SAMN10625632
URMC_146
GCA_004568595.1ContigRZAX00000000
SAMN10625615
URMC_125
GCA_004568485.1ContigRZBW00000000
SAMN10625638
URMC_152
GCA_004568685.1ContigRZCC00000000
SAMN10625643
URMC_162
GCA_004568505.1ContigRZBT00000000
SAMN10625635
URMC_149
GCA_004568555.1ContigRZBP00000000
SAMN10625631
URMC_145
GCA_004568495.1ContigRZCB00000000
SAMN10625642
URMC_161
GCA_004568275.1ContigRZCY00000000
SAMN10625663
URMC_184
GCA_004568255.1ContigRZDK00000000
SAMN10625674
URMC_195
GCA_004568425.1ContigRZCG00000000
SAMN10625647
URMC_166
GCA_004568405.1ContigRZCM00000000
SAMN10625652
URMC_171
GCA_004568395.1ContigRZCQ00000000
SAMN10625656
URMC_175
GCA_004568435.1ContigRZCE00000000
SAMN10625645
URMC_164
GCA_004568345.1ContigRZCV00000000
SAMN10625660
URMC_180
GCA_004568365.1ContigRZCS00000000
SAMN10625658
URMC_178
GCA_004568295.1ContigRZCX00000000
SAMN10625662
URMC_183
GCA_004568235.1ContigRZDI00000000
SAMN10625672
URMC_193
GCA_004568245.1ContigRZDA00000000
SAMN10625665
URMC_186
GCA_004567995.1ContigRZCW00000000
SAMN10625661
URMC_182
GCA_004568155.1ContigRZCJ00000000
SAMN10625650
URMC_169
GCA_004568135.1ContigRZCL00000000
SAMN10625651
URMC_170
GCA_004568115.1ContigRZCN00000000
SAMN10625653
URMC_172
GCA_004568125.1ContigRZCP00000000
SAMN10625655
URMC_174
GCA_004567985.1ContigRZDB00000000
SAMN10625666
URMC_187
GCA_004567955.1ContigRZDC00000000
SAMN10625667
URMC_188
GCA_004568085.1ContigRZCR00000000
SAMN10625657
URMC_176
GCA_004568055.1ContigRZCT00000000
SAMN10625659
URMC_179
GCA_004567835.1ContigRZDJ00000000
SAMN10625673
URMC_194
GCA_004567935.1ContigRZDD00000000
SAMN10625668
URMC_189
GCA_004567885.1ContigRZDF00000000
SAMN10625669
URMC_190
GCA_004567975.1ContigRZCZ00000000
SAMN10625664
URMC_185
GCA_004567865.1ContigRZDG00000000
SAMN10625670
URMC_191
GCA_004567855.1ContigRZDH00000000
SAMN10625671
URMC_192
GCA_004567475.1ContigRZFK00000000
SAMN10620145
URMC_73
GCA_004567315.1ContigRZGJ00000000
SAMN10620168
URMC_97
GCA_004567665.1ContigRZEE00000000
SAMN10620085
URMC_4
GCA_004567165.1ContigRZEA00000000
SAMN10620111
URMC_35
GCA_004567345.1ContigRZGF00000000
SAMN10620164
URMC_93
GCA_004567065.1ContigRZEM00000000
SAMN10620123
URMC_50
GCA_004566575.1ContigRZFQ00000000
SAMN10620088
URMC_8
GCA_004566475.1ContigRZFZ00000000
SAMN10620159
URMC_88
GCA_004569185.1ContigRZAN00000000
SAMN10625606
URMC_116
GCA_004569085.1ContigRZBO00000000
SAMN10625630
URMC_144
GCA_004568905.1ContigRZAL00000000
SAMN10625604
URMC_114
GCA_004569065.1ContigRZBX00000000
SAMN10625639
URMC_153
GCA_004681485.1ContigRZDS00000000SAMN10620104
URMC_26

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