Escherichia coli (ID 383591) - BioProject

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Accession: PRJNA383591 ID: 383591

Escherichia coli

Shiga toxin-producing Escherichia coli genome sequencing

See Genome Information for Escherichia coli

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9369 additional projects are related by organism.

Whole genome sequencing of Shiga toxin-producing Escherichia coli strains isolated from different sources to understand how pathogens respond to food-related stresses and cause disease, and to identify biomarkers.

Accession	PRJNA383591
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 20-Sep-2017 USDA
Relevance	Food safety

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	11089
WGS master	68
SRA Experiments	72
Protein Sequences	354668
Other datasets
BioSample	74
Assembly	68

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

68
68

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002319745.1	NWBD00000000	SAMN07488840	C019	Escherichia coli
GCA_002319735.1	NWBB00000000	SAMN07488842	C056	Escherichia coli
GCA_002319695.1	NWAN00000000	SAMN07488856	F339	Escherichia coli
GCA_002319705.1	NWAZ00000000	SAMN07488844	C104	Escherichia coli
GCA_002319635.1	NVZZ00000000	SAMN07488872	T297	Escherichia coli
GCA_002319645.1	NWAB00000000	SAMN07488870	T168	Escherichia coli
GCA_002319615.1	NWAQ00000000	SAMN07488853	F313	Escherichia coli
GCA_002319625.1	NWAY00000000	SAMN07488845	C114	Escherichia coli
GCA_002319595.1	NWAL00000000	SAMN07488858	F352	Escherichia coli
GCA_002319565.1	NWAW00000000	SAMN07488847	C309	Escherichia coli
GCA_002319555.1	NWAV00000000	SAMN07488848	C316	Escherichia coli
GCA_002319515.1	NWAU00000000	SAMN07488849	C322	Escherichia coli
GCA_002319525.1	NWAP00000000	SAMN07488854	F322	Escherichia coli
GCA_002319485.1	NWAH00000000	SAMN07488862	F500	Escherichia coli
GCA_002319475.1	NWAO00000000	SAMN07488855	F328	Escherichia coli
GCA_002319455.1	NWAD00000000	SAMN07488866	T025	Escherichia coli
GCA_002319435.1	NWAT00000000	SAMN07488850	C323	Escherichia coli
GCA_002319415.1	NWAG00000000	SAMN07488863	IMP 871	Escherichia coli
GCA_002319375.1	NWAC00000000	SAMN07488867	T097	Escherichia coli
GCA_002319385.1	NWBG00000000	SAMN07488837	2185	Escherichia coli
GCA_002319355.1	NWBF00000000	SAMN07488838	65-57	Escherichia coli
GCA_002319335.1	NWBE00000000	SAMN07488839	94-0426	Escherichia coli
GCA_002319315.1	NWBC00000000	SAMN07488841	C040	Escherichia coli
GCA_002319295.1	NWAX00000000	SAMN07488846	C165	Escherichia coli
GCA_002319275.1	NWBA00000000	SAMN07488843	C092	Escherichia coli
GCA_002319255.1	NWAR00000000	SAMN07488852	ED-53	Escherichia coli
GCA_002319235.1	NWAM00000000	SAMN07488857	F344	Escherichia coli
GCA_002319185.1	NWAF00000000	SAMN07488864	IMP 886	Escherichia coli
GCA_002319195.1	NWAK00000000	SAMN07488859	F426	Escherichia coli
GCA_002319165.1	NWAI00000000	SAMN07488861	F498	Escherichia coli
GCA_002319155.1	NWAE00000000	SAMN07488865	JAN 020	Escherichia coli
GCA_002319135.1	NWAJ00000000	SAMN07488860	F469	Escherichia coli
GCA_002319115.1	NWAA00000000	SAMN07488871	T186	Escherichia coli
GCA_002494445.1	NWAS00000000	SAMN07488851	C336	Escherichia coli
GCA_004768375.1	QAEO00000000	SAMN08810272	770021	Escherichia coli
GCA_004767125.1	QAEZ00000000	SAMN08810283	C335	Escherichia coli
GCA_004766955.1	QAFK00000000	SAMN08810294	IMP 133	Escherichia coli
GCA_004767115.1	QAEU00000000	SAMN08810278	C287	Escherichia coli
GCA_004767015.1	QAFF00000000	SAMN08810289	F318	Escherichia coli
GCA_004767135.1	QAEP00000000	SAMN08810273	2.4114	Escherichia coli
GCA_004767145.1	QAER00000000	SAMN08810275	87-1814	Escherichia coli
GCA_004767035.1	QAFH00000000	SAMN08810291	F345	Escherichia coli
GCA_004767105.1	QAFA00000000	SAMN08810284	C347	Escherichia coli
GCA_004767045.1	QAFE00000000	SAMN08810288	F308	Escherichia coli
GCA_004767025.1	QAFC00000000	SAMN08810286	DEC 024	Escherichia coli
GCA_004766965.1	QAFJ00000000	SAMN08810293	IMP 1147	Escherichia coli
GCA_004766935.1	QAFN00000000	SAMN08810297	MFS 13	Escherichia coli
GCA_004766925.1	QAFO00000000	SAMN08810298	MFS 18	Escherichia coli
GCA_004766945.1	QAFL00000000	SAMN08810295	JAN 013B	Escherichia coli
GCA_004766865.1	QAFR00000000	SAMN08810301	MFS 26	Escherichia coli
GCA_004766845.1	QAFT00000000	SAMN08810303	MFS 5	Escherichia coli
GCA_004766835.1	QAES00000000	SAMN08810276	88-1509	Escherichia coli
GCA_004766795.1	QAET00000000	SAMN08810277	ADL87-0448	Escherichia coli
GCA_004766745.1	QAEX00000000	SAMN08810281	C306	Escherichia coli
GCA_004766755.1	QAEY00000000	SAMN08810282	C334	Escherichia coli
GCA_004766855.1	QAEQ00000000	SAMN08810274	820485	Escherichia coli
GCA_004766705.1	QAFD00000000	SAMN08810287	DEC10B	Escherichia coli
GCA_004766775.1	QAEV00000000	SAMN08810279	C304	Escherichia coli
GCA_004766675.1	QAFI00000000	SAMN08810292	F448	Escherichia coli
GCA_004766625.1	QAFM00000000	SAMN08810296	MAY 063	Escherichia coli
GCA_004766575.1	QAFS00000000	SAMN08810302	MFS 4	Escherichia coli
GCA_004766695.1	QAFB00000000	SAMN08810285	DEC 023	Escherichia coli
GCA_004766595.1	QAFQ00000000	SAMN08810300	MFS 25	Escherichia coli
GCA_004766685.1	QAFG00000000	SAMN08810290	F336	Escherichia coli
GCA_004766565.1	QAFU00000000	SAMN08810304	MFS 9	Escherichia coli
GCA_004766605.1	QAFP00000000	SAMN08810299	MFS 22	Escherichia coli
GCA_004766555.1	QAFV00000000	SAMN08810305	SL106	Escherichia coli
GCA_004769025.1	QAEW00000000	SAMN08810280	C305	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	74
Data volume, Mbytes	42701

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Escherichia coli

Shiga toxin-producing Escherichia coli genome sequencing

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