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Accession: PRJNA507325 ID: 507325

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
The association of E. coli genomic traits with the clinical and pathological outcome of salpingitis in egg laying hens?
AccessionPRJNA507325
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 30-Apr-2019
University of Copenhagen
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)7892
WGS master62
Protein Sequences303921
Other datasets
BioSample62
Assembly62
Assembly details:
Assembly levelNumber of Assemblies
56
6
62
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_005574175.1ContigSZTX00000000SAMN10980054
Broiler parent82
GCA_005574115.1ContigSZTW00000000SAMN10980050
Broiler parent77
GCA_005574095.1ContigSZTZ00000000SAMN10980086
Broiler parent115
GCA_005574105.1ContigSZTY00000000SAMN10980080
Broiler parent109
GCA_004961075.1ScaffoldSSQA00000000SAMN10980029
Broiler parent54
GCA_004961035.1ScaffoldSSQD00000000SAMN10980032
Broiler parent58
GCA_004961055.1ScaffoldSSQB00000000SAMN10980030
Broiler parent55
GCA_004961315.1ScaffoldSSPZ00000000SAMN10980028
Broiler parent53
GCA_004960735.1ScaffoldSSRJ00000000SAMN10980066
Broiler parent95
GCA_004961045.1ScaffoldSSQC00000000SAMN10980031
Broiler parent57
GCA_004961025.1ScaffoldSSQG00000000SAMN10980035
Broiler parent61
GCA_004960955.1ScaffoldSSQJ00000000SAMN10980038
Broiler parent65
GCA_004960925.1ScaffoldSSQL00000000SAMN10980040
Broiler parent67
GCA_004960915.1ScaffoldSSQO00000000SAMN10980043
Broiler parent70
GCA_004960965.1ScaffoldSSQH00000000SAMN10980036
Broiler parent62
GCA_004960945.1ScaffoldSSQK00000000SAMN10980039
Broiler parent66
GCA_004960895.1ScaffoldSSQS00000000SAMN10980047
Broiler parent74
GCA_004960825.1ScaffoldSSRA00000000SAMN10980057
Broiler parent85
GCA_004960775.1ScaffoldSSRC00000000SAMN10980059
Broiler parent87
GCA_004960835.1ScaffoldSSQX00000000SAMN10980053
Broiler parent81
GCA_004960805.1ScaffoldSSQZ00000000SAMN10980056
Broiler parent84
GCA_004960875.1ContigSSQU00000000SAMN10980049
Broiler parent76
GCA_004960695.1ScaffoldSSRT00000000SAMN10980076
Broiler parent105
GCA_004960725.1ScaffoldSSRO00000000SAMN10980071
Broiler parent100
GCA_004960595.1ScaffoldSSQF00000000SAMN10980034
Broiler parent60
GCA_004960715.1ScaffoldSSRL00000000SAMN10980068
Broiler parent97
GCA_004960645.1ScaffoldSSRV00000000SAMN10980078
Broiler parent107
GCA_004960745.1ScaffoldSSRF00000000SAMN10980062
Broiler parent90
GCA_004960605.1ScaffoldSSSD00000000SAMN10980088
Broiler parent117
GCA_004960635.1ScaffoldSSRX00000000SAMN10980081
Broiler parent110
GCA_004960575.1ScaffoldSSQE00000000SAMN10980033
Broiler parent59
GCA_004960525.1ScaffoldSSQM00000000SAMN10980041
Broiler parent68
GCA_004960625.1ScaffoldSSSC00000000SAMN10980087
Broiler parent116
GCA_004960515.1ScaffoldSSQI00000000SAMN10980037
Broiler parent63
GCA_004960365.1ScaffoldSSQY00000000SAMN10980055
Broiler parent83
GCA_004960495.1ScaffoldSSQQ00000000SAMN10980045
Broiler parent72
GCA_004960505.1ScaffoldSSQN00000000SAMN10980042
Broiler parent69
GCA_004960485.1ScaffoldSSQP00000000SAMN10980044
Broiler parent71
GCA_004960415.1ScaffoldSSQT00000000SAMN10980048
Broiler parent75
GCA_004960395.1ScaffoldSSQW00000000SAMN10980052
Broiler parent80
GCA_004960425.1ScaffoldSSQR00000000SAMN10980046
Broiler parent73
GCA_004960405.1ScaffoldSSQV00000000SAMN10980051
Broiler parent78
GCA_004960325.1ScaffoldSSRD00000000SAMN10980060
Broiler parent88
GCA_004960265.1ScaffoldSSRG00000000SAMN10980063
Broiler parent92
GCA_004960345.1ContigSSRB00000000SAMN10980058
Broiler parent86
GCA_004960225.1ScaffoldSSRK00000000SAMN10980067
Broiler parent96
GCA_004960315.1ScaffoldSSRE00000000SAMN10980061
Broiler parent89
GCA_004960255.1ScaffoldSSRH00000000SAMN10980064
Broiler parent93
GCA_004960205.1ScaffoldSSRM00000000SAMN10980069
Broiler parent98
GCA_004960125.1ScaffoldSSRQ00000000SAMN10980073
Broiler parent102
GCA_004960235.1ScaffoldSSRI00000000SAMN10980065
Broiler parent94
GCA_004960195.1ScaffoldSSRN00000000SAMN10980070
Broiler parent99
GCA_004960145.1ScaffoldSSRP00000000SAMN10980072
Broiler parent101
GCA_004960115.1ScaffoldSSRR00000000SAMN10980074
Broiler parent103
GCA_004960105.1ScaffoldSSRU00000000SAMN10980077
Broiler parent106
GCA_004960095.1ScaffoldSSRS00000000SAMN10980075
Broiler parent104
GCA_004960015.1ScaffoldSSRZ00000000SAMN10980083
Broiler parent112
GCA_004960085.1ScaffoldSSRW00000000SAMN10980079
Broiler parent108
GCA_004959985.1ScaffoldSSRY00000000SAMN10980082
Broiler parent111
GCA_004960025.1ScaffoldSSSE00000000SAMN10980089
Broiler parent118
GCA_004959995.1ScaffoldSSSA00000000SAMN10980084
Broiler parent113
GCA_004960005.1ScaffoldSSSB00000000SAMN10980085
Broiler parent114

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