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Accession: PRJNA476469 ID: 476469

Enterococcus

Agricultural origins of a highly-persistent clone of vancomycin-resistant Enterococcus faecalis in New Zealand

This project analyzes 231 VRE isolates sourced from clinical and poultry sources in New Zealand between 1996 and 2009, in order to better understand persistence mechanisms and spread between reservoirs during this time period.
AccessionPRJNA476469
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsRushton-Green R et al., "Agricultural Origins of a Highly Persistent Lineage of Vancomycin-Resistant Enterococcus faecalis in New Zealand.", Appl Environ Microbiol, 2019 Jul 1;85(13)
SubmissionRegistration date: 17-Jun-2018
University of Otago
RelevanceEpidemiology relating to Agricultural and Medical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)30863
WGS master231
Protein Sequences632462
Publications
PubMed1
PMC1
Other datasets
BioSample231
Assembly231
Assembly details:
Assembly levelNumber of Assemblies
143
88
231
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_005234765.1ScaffoldQPUJ00000000SAMN09435247
TV7
GCA_005234735.1ScaffoldQPUB00000000SAMN09435255
VV10
GCA_005234675.1ScaffoldQPTZ00000000SAMN09435257
VV14
GCA_005234665.1ScaffoldQPTU00000000SAMN09435262
VV9
GCA_005234685.1ScaffoldQPTV00000000SAMN09435261
VV8
GCA_005235805.1ScaffoldQPTG00000000SAMN09435276
AR99-84
GCA_005235795.1ScaffoldQPTH00000000SAMN09435275
AR99-190
GCA_005236055.1ScaffoldQPTX00000000SAMN09435259
VV5
GCA_005235765.1ScaffoldQPTE00000000SAMN09435278
ARL04-506
GCA_005236265.1ScaffoldQPUR00000000SAMN09435239
TV5
GCA_005236035.1ScaffoldQPUC00000000SAMN09435254
TV9
GCA_005235985.1ScaffoldQPTT00000000SAMN09435263
AR00-128
GCA_005235975.1ScaffoldQPTR00000000SAMN09435265
AR01-1155
GCA_005235945.1ScaffoldQPTP00000000SAMN09435267
AR01-215
GCA_005235935.1ScaffoldQPTO00000000SAMN09435268
AR01-673
GCA_005235885.1ScaffoldQPTM00000000SAMN09435270
AR01-912
GCA_005235895.1ScaffoldQPTN00000000SAMN09435269
AR01-802
GCA_005235875.1ScaffoldQPTL00000000SAMN09435271
AR96-360
GCA_005235825.1ScaffoldQPTJ00000000SAMN09435273
AR99-1024
GCA_005235315.1ScaffoldQPRZ00000000SAMN09435309
ARL08-192
GCA_005234635.1ScaffoldQPTS00000000SAMN09435264
AR00-36
GCA_005234575.1ScaffoldQPTF00000000SAMN09435277
ARL04-446
GCA_005234585.1ScaffoldQPTI00000000SAMN09435274
AR99-1107
GCA_005237335.1ScaffoldQPVC00000000SAMN09435228
TV46
GCA_005237405.1ScaffoldQPVI00000000SAMN09435222
TV3
GCA_005237155.1ScaffoldQPUQ00000000SAMN09435240
TV70
GCA_005237145.1ScaffoldQPZM00000000SAMN09435114
10-1A
GCA_005236755.1ScaffoldQPWY00000000SAMN09435180
IV12
GCA_005236705.1ScaffoldQPWW00000000SAMN09435182
IV22
GCA_005236695.1ScaffoldQPWV00000000SAMN09435183
IV23
GCA_005236595.1ScaffoldQPWG00000000SAMN09435198
TV126
GCA_005236615.1ScaffoldQPWJ00000000SAMN09435195
TV121
GCA_005236635.1ScaffoldQPWS00000000SAMN09435186
TV102
GCA_005236535.1ScaffoldQPWE00000000SAMN09435200
TV135
GCA_005236475.1ScaffoldQPVR00000000SAMN09435213
TV19
GCA_005236425.1ScaffoldQPVK00000000SAMN09435220
TV32
GCA_005236415.1ScaffoldQPVM00000000SAMN09435218
TV2
GCA_005237765.1ScaffoldQPWL00000000SAMN09435193
TV112
GCA_005237655.1ScaffoldQPVZ00000000SAMN09435205
TV147
GCA_005237635.1ScaffoldQPWA00000000SAMN09435204
TV13
GCA_005237605.1ScaffoldQPVY00000000SAMN09435206
TV148
GCA_005237575.1ScaffoldQPVW00000000SAMN09435208
TV154
GCA_005237795.1ScaffoldQPWO00000000SAMN09435190
TV106
GCA_005237565.1ScaffoldQPVT00000000SAMN09435211
TV163
GCA_005237495.1ScaffoldQPVN00000000SAMN09435217
TV29
GCA_005237505.1ScaffoldQPVO00000000SAMN09435216
TV28
GCA_005237455.1ScaffoldQPVL00000000SAMN09435219
TV30
GCA_005237435.1ScaffoldQPVJ00000000SAMN09435221
TV33
GCA_005237095.1ScaffoldQPZK00000000SAMN09435116
10-2-17
GCA_005237085.1ScaffoldQPZH00000000SAMN09435119
10-6-46
GCA_005237075.1ScaffoldQPZG00000000SAMN09435120
10-6-50
GCA_005237015.1ScaffoldQPYZ00000000SAMN09435127
12-1VP
GCA_005236985.1ScaffoldQPYS00000000SAMN09435134
12-8-01
GCA_005236975.1ScaffoldQPYM00000000SAMN09435140
13-1-07
GCA_005236965.1ScaffoldQPYI00000000SAMN09435144
13-1-09
GCA_005236945.1ScaffoldQPYJ00000000SAMN09435143
13-10-98
GCA_005236915.1ScaffoldQPYE00000000SAMN09435148
13-2-16
GCA_005236885.1ScaffoldQPXV00000000SAMN09435157
13-7-61
GCA_005236865.1ScaffoldQPXX00000000SAMN09435155
13-4VP
GCA_005236845.1ScaffoldQPXT00000000SAMN09435159
13-9-85
GCA_005236855.1ScaffoldQPXL00000000SAMN09435167
5A-19
GCA_005236835.1ScaffoldQPXK00000000SAMN09435168
5A-1
GCA_005236795.1ScaffoldQPXG00000000SAMN09435172
5A-5
GCA_005236775.1ScaffoldQPXD00000000SAMN09435175
5A-8
GCA_005236765.1ScaffoldQPXF00000000SAMN09435173
5A-6
GCA_005238955.1ScaffoldQPZR00000000SAMN09435109
10-1-01
GCA_005238935.1ScaffoldQPZQ00000000SAMN09435110
10-1-02
GCA_005238895.1ScaffoldQPZP00000000SAMN09435111
10-1-04
GCA_005238795.1ScaffoldQPYY00000000SAMN09435128
12-3-27
GCA_005238885.1ScaffoldQPZO00000000SAMN09435112
10-1-05
GCA_005238845.1ScaffoldQPZD00000000SAMN09435123
11-3A
GCA_005238775.1ScaffoldQPYO00000000SAMN09435138
13-1-05
GCA_005238705.1ScaffoldQPYF00000000SAMN09435147
13-2-13
GCA_005238715.1ScaffoldQPYH00000000SAMN09435145
13-1-10
GCA_005238695.1ScaffoldQPYG00000000SAMN09435146
13-1VP
GCA_005238685.1ScaffoldQPYD00000000SAMN09435149
13-2-17
GCA_005238535.1ScaffoldQPZA00000000SAMN09435126
12-03-20
GCA_005238525.1ScaffoldQPZC00000000SAMN09435124
11-7A
GCA_005238455.1ScaffoldQPYU00000000SAMN09435132
12-7-68
GCA_005238425.1ScaffoldQPYP00000000SAMN09435137
13-06-51
GCA_005238435.1ScaffoldQPYN00000000SAMN09435139
13-1-06
GCA_005238415.1ScaffoldQPYL00000000SAMN09435141
13-1-08
GCA_005238345.1ScaffoldQPYC00000000SAMN09435150
13-2-19
GCA_005238355.1ScaffoldQPYB00000000SAMN09435151
13-2VP
GCA_005238335.1ScaffoldQPYK00000000SAMN09435142
13-10-96
GCA_005238325.1ScaffoldQPXZ00000000SAMN09435153
13-4-33
GCA_005238315.1ScaffoldQPYA00000000SAMN09435152
13-4-32
GCA_005238235.1ScaffoldQPXW00000000SAMN09435156
13-5-45
GCA_005238255.1ScaffoldQPXU00000000SAMN09435158
13-8-72
GCA_005238245.1ScaffoldQPXY00000000SAMN09435154
13-4-35
GCA_005238195.1ScaffoldQPXS00000000SAMN09435160
13-9-86
GCA_005238215.1ScaffoldQPXR00000000SAMN09435161
13-9-88
GCA_005238175.1ScaffoldQPXQ00000000SAMN09435162
5A-12
GCA_005238165.1ScaffoldQPXO00000000SAMN09435164
5A-15
GCA_005238155.1ScaffoldQPXP00000000SAMN09435163
5A-13
GCA_005238115.1ScaffoldQPXM00000000SAMN09435166
5A-18
GCA_005238105.1ScaffoldQPXN00000000SAMN09435165
5A-16
GCA_005238075.1ScaffoldQPXJ00000000SAMN09435169
5A-20
GCA_005238055.1ScaffoldQPXI00000000SAMN09435170
5A-2
GCA_005238065.1ScaffoldQPXH00000000SAMN09435171
5A-4
GCA_005238635.1ScaffoldQPZN00000000SAMN09435113
10-1-09
GCA_005238605.1ScaffoldQPZI00000000SAMN09435118
10-6-41
GCA_005238615.1ScaffoldQPZL00000000SAMN09435115
10-2-12
GCA_005238025.1ScaffoldQPXE00000000SAMN09435174
5A-7
GCA_005237955.1ScaffoldQPXA00000000SAMN09435178
EF13-2-12
GCA_005237985.1ScaffoldQPXC00000000SAMN09435176
5A-9
GCA_005237965.1ScaffoldQPXB00000000SAMN09435177
5D-62
GCA_005237925.1ScaffoldQPWZ00000000SAMN09435179
EF13-4-31
GCA_005237915.1ScaffoldQPWX00000000SAMN09435181
IV18
GCA_005237895.1ScaffoldQPWT00000000SAMN09435185
IV30
GCA_005237855.1ScaffoldQPWR00000000SAMN09435187
TV103
GCA_005238585.1ScaffoldQPZF00000000SAMN09435121
10-6A
GCA_005237845.1ScaffoldQPWP00000000SAMN09435189
TV105
GCA_005237715.1ContigQPWH00000000SAMN09435197
TV125
GCA_005238445.1ScaffoldQPYV00000000SAMN09435131
12-6VP
GCA_005237735.1ContigQPWK00000000SAMN09435194
TV118
GCA_005237785.1ContigQPWM00000000SAMN09435192
TV111
GCA_005238475.1ContigQPYW00000000SAMN09435130
12-5VP
GCA_005237865.1ContigQPWQ00000000SAMN09435188
TV104
GCA_005238515.1ContigQPYX00000000SAMN09435129
12-3VP
GCA_005238785.1ContigQPYQ00000000SAMN09435136
12-9VP
GCA_005238665.1ContigQPZS00000000SAMN09435108
07-11-07
GCA_005238815.1ContigQPYT00000000SAMN09435133
12-7VP
GCA_005238985.1ContigQPZT00000000SAMN09435107
07-03-81
GCA_005238805.1ContigQPYR00000000SAMN09435135
12-8VP
GCA_005238875.1ContigQPZJ00000000SAMN09435117
10-2A
GCA_005236665.1ContigQPWU00000000SAMN09435184
IV28
GCA_005237365.1ContigQPVF00000000SAMN09435225
TV43
GCA_005237355.1ContigQPVD00000000SAMN09435227
TV45
GCA_005237385.1ContigQPVH00000000SAMN09435223
TV41
GCA_005237705.1ContigQPWI00000000SAMN09435196
TV123
GCA_005237545.1ScaffoldQPVS00000000SAMN09435212
TV18
GCA_005237725.1ContigQPWD00000000SAMN09435201
TV137
GCA_005237675.1ContigQPWC00000000SAMN09435202
TV138
GCA_005237525.1ContigQPVQ00000000SAMN09435214
TV20
GCA_005237515.1ContigQPVP00000000SAMN09435215
TV21
GCA_005236305.1ContigQPUZ00000000SAMN09435231
TV49
GCA_005236345.1ContigQPVB00000000SAMN09435229
TV47
GCA_005236325.1ContigQPVA00000000SAMN09435230
TV48
GCA_005236315.1ContigQPUW00000000SAMN09435234
TV54
GCA_005236245.1ContigQPUO00000000SAMN09435242
TV73
GCA_005236235.1ContigQPUM00000000SAMN09435244
TV76
GCA_005236195.1ContigQPUK00000000SAMN09435246
TV78
GCA_005236355.1ContigQPVE00000000SAMN09435226
TV44
GCA_005236375.1ContigQPVG00000000SAMN09435224
TV42
GCA_005236525.1ContigQPWB00000000SAMN09435203
TV139
GCA_005236515.1ContigQPVU00000000SAMN09435210
TV162
GCA_005236505.1ContigQPVX00000000SAMN09435207
TV14
GCA_005236495.1ContigQPVV00000000SAMN09435209
TV15
GCA_005236605.1ContigQPWF00000000SAMN09435199
TV12
GCA_005236645.1ContigQPWN00000000SAMN09435191
TV10
GCA_005237055.1ScaffoldQPZB00000000SAMN09435125
11-8A
GCA_005237325.1ContigQPUY00000000SAMN09435232
TV4
GCA_005237275.1ContigQPUX00000000SAMN09435233
TV52
GCA_005237235.1ContigQPUV00000000SAMN09435235
TV55
GCA_005237205.1ContigQPUT00000000SAMN09435237
TV57
GCA_005237165.1ContigQPUP00000000SAMN09435241
TV71
GCA_005237215.1ContigQPUU00000000SAMN09435236
TV56
GCA_005237195.1ContigQPUS00000000SAMN09435238
TV58
GCA_005237065.1ScaffoldQPZE00000000SAMN09435122
10-9A
GCA_005234515.1ContigQPSZ00000000SAMN09435283
ARL07-1163
GCA_005234495.1ContigQPSX00000000SAMN09435285
ARL07-1169
GCA_005234505.1ScaffoldQPSS00000000SAMN09435290
ARL07-1300
GCA_005234485.1ContigQPSL00000000SAMN09435297
ARL08-105
GCA_005234425.1ContigQPSB00000000SAMN09435307
ARL08-1412
GCA_005234405.1ScaffoldQPSA00000000SAMN09435308
ARL08-1437
GCA_005234435.1ScaffoldQPSH00000000SAMN09435301
ARL08-1215
GCA_005234395.1ContigQPRX00000000SAMN09435311
ARL08-32
GCA_005234365.1ContigQPRW00000000SAMN09435312
ARL08-339
GCA_005234345.1ContigQPRV00000000SAMN09435313
ARL08-35
GCA_005234325.1ContigQPRU00000000SAMN09435314
ARL08-39
GCA_005234315.1ContigQPRP00000000SAMN09435319
ARL08-46
GCA_005234295.1ScaffoldQPRM00000000SAMN09435322
ARL08-552
GCA_005234245.1ScaffoldQPRC00000000SAMN09435332
ARL09-1265
GCA_005234235.1ScaffoldQPQZ00000000SAMN09435335
ARL09-193
GCA_005234215.1ContigQPRA00000000SAMN09435334
ARL09-146
GCA_005234225.1ContigQPRF00000000SAMN09435329
ARL09-100
GCA_005235275.1ContigQPRR00000000SAMN09435317
ARL08-428
GCA_005235115.1ContigQPRQ00000000SAMN09435318
ARL08-43
GCA_005235045.1ScaffoldQPRN00000000SAMN09435321
ARL08-484
GCA_005235075.1ScaffoldQPRO00000000SAMN09435320
ARL08-477
GCA_005235015.1ScaffoldQPRL00000000SAMN09435323
ARL08-67
GCA_005234975.1ScaffoldQPRI00000000SAMN09435326
ARL08-804
GCA_005234985.1ContigQPRK00000000SAMN09435324
ARL08-712
GCA_005234965.1ContigQPRJ00000000SAMN09435325
ARL08-781
GCA_005234955.1ContigQPRH00000000SAMN09435327
ARL08-902
GCA_005234895.1ContigQPRE00000000SAMN09435330
ARL09-1074a
GCA_005234875.1ContigQPRD00000000SAMN09435331
ARL09-1209
GCA_005234905.1ContigQPRG00000000SAMN09435328
ARL08-983
GCA_005234855.1ContigQPRB00000000SAMN09435333
ARL09-1374
GCA_005234785.1ContigQPUN00000000SAMN09435243
TV75
GCA_005234835.1ContigQPQY00000000SAMN09435336
ARL09-409
GCA_005234745.1ScaffoldQPUG00000000SAMN09435250
TV83
GCA_005235735.1ScaffoldQPTB00000000SAMN09435281
ARL05-67
GCA_005235745.1ScaffoldQPTC00000000SAMN09435280
ARL05-425
GCA_005236225.1ContigQPUL00000000SAMN09435245
TV77
GCA_005236135.1ContigQPUF00000000SAMN09435251
TV92
GCA_005236145.1ContigQPUH00000000SAMN09435249
TV82
GCA_005236125.1ContigQPUE00000000SAMN09435252
TV97
GCA_005236155.1ScaffoldQPUI00000000SAMN09435248
TV81
GCA_005236115.1ContigQPUD00000000SAMN09435253
TV98
GCA_005236025.1ContigQPTW00000000SAMN09435260
VV6
GCA_005235665.1ScaffoldQPSY00000000SAMN09435284
ARL07-1166
GCA_005235645.1ScaffoldQPSV00000000SAMN09435287
ARL07-1198
GCA_005235655.1ContigQPSW00000000SAMN09435286
ARL07-1195
GCA_005235635.1ScaffoldQPSU00000000SAMN09435288
ARL07-1205
GCA_005235585.1ContigQPSQ00000000SAMN09435292
ARL07-1345
GCA_005235575.1ScaffoldQPSP00000000SAMN09435293
ARL07-1348
GCA_005235565.1ContigQPSO00000000SAMN09435294
ARL07-1351
GCA_005235535.1ContigQPSN00000000SAMN09435295
ARL07-1384
GCA_005235345.1ScaffoldQPSC00000000SAMN09435306
ARL08-1309
GCA_005235495.1ContigQPSM00000000SAMN09435296
ARL07-973
GCA_005235465.1ContigQPSI00000000SAMN09435300
ARL08-1189
GCA_005235475.1ScaffoldQPSJ00000000SAMN09435299
ARL08-1077
GCA_005235445.1ContigQPSG00000000SAMN09435302
ARL08-1218
GCA_005235305.1ContigQPRY00000000SAMN09435310
ARL08-288
GCA_005235395.1ScaffoldQPSE00000000SAMN09435304
ARL08-1256
GCA_005235385.1ContigQPSF00000000SAMN09435303
ARL08-1249
GCA_005235375.1ContigQPSD00000000SAMN09435305
ARL08-1292
GCA_005235285.1ScaffoldQPRS00000000SAMN09435316
ARL08-394
GCA_005235295.1ContigQPRT00000000SAMN09435315
ARL08-391
GCA_005235965.1ContigQPTQ00000000SAMN09435266
AR01-139
GCA_005234705.1ContigQPUA00000000SAMN09435256
VV11
GCA_005235685.1ScaffoldQPTA00000000SAMN09435282
ARL07-1139
GCA_005235725.1ContigQPST00000000SAMN09435289
ARL07-1286
GCA_005234565.1ScaffoldQPTD00000000SAMN09435279
ARL04-840
GCA_005234595.1ContigQPTK00000000SAMN09435272
AR98-565
GCA_005281885.1ContigQPSK00000000SAMN09435298
ARL08-1074
GCA_005287905.1ContigQPSR00000000SAMN09435291
ARL07-1328
GCA_005234805.1ScaffoldQPQX00000000SAMN09435337
ARL09-542
GCA_005236045.1ScaffoldQPTY00000000SAMN09435258
VV15

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