Aeromonas (ID 391781) - BioProject

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Accession: PRJNA391781 ID: 391781

Aeromonas

Aeromonas T3SS effectors

Aeromonas is found in many different environments, can be a pathogen in some animals and a symbiont in others. More...

Accession	PRJNA391781
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Aeromonas[Taxonomy ID: 642] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas
Publications	Rangel LT et al., "Identification and characterization of putative Aeromonas spp. T3SS effectors.", PLoS One, 2019;14(6):e0214035
Grants	"Integrated Research to Improve on-Farm Animal Health in Salmonid Aquaculture" (Grant ID USDA ARS 58-1930-4-002, United States Dept of Agriculture)
Submission	Registration date: 10-Jun-2019 University of Connecticut Graf Lab
Related Resources	Graf lab website
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4318
WGS master	40
SRA Experiments	40
Protein Sequences	168013
Publications
PubMed	1
PMC	1
Other datasets
BioSample	40
Assembly	40

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

38
2
40

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_006246445.1	NKWZ00000000	SAMN07312751	ATCC 35942	Aeromonas allosaccharophila
GCA_006243135.1	NMSG00000000	SAMN07312780	TCO22	Aeromonas caviae
GCA_006243335.1	NKWO00000000	SAMN07312764	BVH70	Aeromonas dhakensis
GCA_006246345.1	NKWP00000000	SAMN07312763	BVH69	Aeromonas dhakensis
GCA_006246145.1	NKWQ00000000	SAMN07312762	BVH68	Aeromonas dhakensis
GCA_006226215.1	PDXI00000000	SAMN07312761	BVH65	Aeromonas dhakensis
GCA_006246155.1	NKWT00000000	SAMN07312758	BVH43	Aeromonas dhakensis
GCA_006246455.1	NKXB00000000	SAMN07312749	ARS-131-14	Aeromonas hydrophila
GCA_006246545.1	NKXI00000000	SAMN07312742	2014-10509-28-27	Aeromonas hydrophila
GCA_006243365.1	NKWF00000000	SAMN07312773	PAQ091014-1	Aeromonas hydrophila
GCA_006246385.1	NKWV00000000	SAMN07312756	BAQ071013-136	Aeromonas hydrophila
GCA_006243265.1	NKWC00000000	SAMN07312776	PAQ091014-12	Aeromonas hydrophila
GCA_006243205.1	NKWA00000000	SAMN07312778	PAQ091014-21	Aeromonas hydrophila
GCA_006243275.1	NKWD00000000	SAMN07312775	PAQ091014-9	Aeromonas hydrophila
GCA_006243385.1	NKWG00000000	SAMN07312772	Ho603	Aeromonas jandaei
GCA_006246225.1	NKWW00000000	SAMN07312754	BAQ071013-132	Aeromonas media
GCA_006246425.1	NKWY00000000	SAMN07312752	BAQ071013-115	Aeromonas media
GCA_006246135.1	NKWL00000000	SAMN07312767	CIP 103210	Aeromonas salmonicida
GCA_006243325.1	NKWI00000000	SAMN07312770	CIP 107036	Aeromonas salmonicida
GCA_006246305.1	NKWJ00000000	SAMN07312769	CIP 104757	Aeromonas salmonicida
GCA_006246315.1	NKWK00000000	SAMN07312768	CIP 104001	Aeromonas salmonicida
GCA_006246595.1	NKXJ00000000	SAMN07312741	2014-10509-27-20	Aeromonas sobria
GCA_006246215.1	NKXA00000000	SAMN07312750	ARS-145-14	Aeromonas sobria
GCA_006243235.1	NKWB00000000	SAMN07312777	PAQ091014-19	Aeromonas sobria
GCA_006243315.1	NKWE00000000	SAMN07312774	PAQ091014-5	Aeromonas sobria
GCA_006243395.1	NKWH00000000	SAMN07312771	Hm22	Aeromonas veronii
GCA_006243415.1	NKWM00000000	SAMN07312766	CECT 7059	Aeromonas veronii
GCA_006243165.1	NKVZ00000000	SAMN07312779	TCO21	Aeromonas veronii
GCA_006246325.1	NKWN00000000	SAMN07312765	CECT 4902	Aeromonas veronii
GCA_006246275.1	NKXH00000000	SAMN07312743	ADV102	Aeromonas veronii
GCA_006246235.1	NKXE00000000	SAMN07312746	AK241	Aeromonas veronii
GCA_006246165.1	NKWS00000000	SAMN07312759	BVH46	Aeromonas veronii
GCA_006246395.1	NKWX00000000	SAMN07312753	BAQ071013-116	Aeromonas veronii
GCA_006246355.1	NKWR00000000	SAMN07312760	BVH47	Aeromonas veronii
GCA_006246175.1	NKWU00000000	SAMN07312757	BVH37	Aeromonas veronii
GCA_006226255.1	PDXJ00000000	SAMN07312755	BAQ071013-135	Aeromonas veronii
GCA_006246495.1	NKXD00000000	SAMN07312747	AK247	Aeromonas veronii
GCA_006246515.1	NKXF00000000	SAMN07312745	AK236	Aeromonas veronii
GCA_006246485.1	NKXC00000000	SAMN07312748	AMC 25	Aeromonas veronii
GCA_006246555.1	NKXG00000000	SAMN07312744	AK227	Aeromonas veronii

SRA Data Details

Parameter	Value
Data volume, Gbases	26
Data volume, Mbytes	17276

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Aeromonas

Aeromonas T3SS effectors

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