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Links from Nucleotide

Accession: PRJNA436012 ID: 436012

Xanthomonas FL diversity study

Characterization of Xanthomonas strains in transplant and field plants
AccessionPRJNA436012
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsAbrahamian P et al., "Molecular Epidemiology of Xanthomonas perforans Outbreaks in Tomato Plants from Transplant to Field as Determined by Single-Nucleotide Polymorphism Analysis.", Appl Environ Microbiol, 2019 Sep 15;85(18)
SubmissionRegistration date: 26-Feb-2018
University of Florida
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)21068
WGS master66
Genomic DNA4
SRA Experiments68
Protein Sequences303950
Publications
PubMed1
PMC1
Other datasets
BioSample134
Assembly67
Assembly details:
Assembly levelNumber of Assemblies
1
57
9
67
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_004102535.1ScaffoldPUWN00000000
SAMN08610918
GEV2004
GCA_004102525.1ScaffoldPUWL00000000
SAMN08610920
GEV2010
GCA_004102515.1ScaffoldPUVO00000000
SAMN08610944
GEV1921
GCA_004102505.1ScaffoldPUUY00000000
SAMN08610962
GEV2116
GCA_004102455.1ScaffoldPUUX00000000
SAMN08610963
GEV2117
GCA_004102435.1ScaffoldPUUT00000000
SAMN08610968
GEV2122
GCA_004102415.1ScaffoldPUUS00000000
SAMN08610970
GEV2124
GCA_004102425.1ScaffoldPUUN00000000
SAMN08610975
GEV2129
GCA_004102405.1ScaffoldPUUM00000000
SAMN08610976
GEV2130
GCA_004102345.1ScaffoldPUUJ00000000
SAMN08610979
GEV2134
GCA_004102325.1ScaffoldPUWR00000000
SAMN08610914
GEV1989
GCA_004102335.1ScaffoldPUUI00000000
SAMN08610980
GEV2135
GCA_004102315.1ScaffoldPUWM00000000
SAMN08610919
GEV2009
GCA_004102305.1ScaffoldPUWI00000000
SAMN08610923
GEV2015
GCA_004102275.1ScaffoldPUWF00000000
SAMN08610926
GEV2049
GCA_004102235.1ScaffoldPUVY00000000
SAMN08610933
GEV2063
GCA_004102225.1ScaffoldPUUZ00000000
SAMN08610961
GEV2115
GCA_004102215.1ScaffoldPUVB00000000
SAMN08610958
GEV2112
GCA_004102205.1ContigPYLJ00000000
SAMN08610966
GEV2120
GCA_004102175.1ScaffoldPUVH00000000
SAMN08610951
GEV2097
GCA_004102165.1ScaffoldPUVG00000000
SAMN08610952
GEV2098
GCA_004102085.1ScaffoldPUUR00000000
SAMN08610971
GEV2125
GCA_004102095.1ScaffoldPUUL00000000
SAMN08610977
GEV2132
GCA_004102065.1ScaffoldPUUP00000000
SAMN08610973
GEV2127
GCA_004102075.1ScaffoldPUUU00000000
SAMN08610967
GEV2121
GCA_006980665.1ScaffoldPUWQ00000000
SAMN08610915
GEV1991
GCA_006980655.1ContigPUWP00000000
SAMN08610916
GEV1992
GCA_006980625.1ContigPUWO00000000
SAMN08610917
GEV1993
GCA_006980615.1ScaffoldPUWK00000000
SAMN08610921
GEV2011
GCA_006980585.1ScaffoldPUWJ00000000
SAMN08610922
GEV2013
GCA_006980575.1ScaffoldPUWH00000000
SAMN08610924
GEV2047
GCA_006980505.1ScaffoldPUWC00000000
SAMN08610929
GEV2055
GCA_006980495.1ContigPUVZ00000000
SAMN08610932
GEV2060
GCA_006980525.1ScaffoldPUWD00000000
SAMN08610928
GEV2052
GCA_006980475.1ContigPYLM00000000
SAMN08610942
GEV1919
GCA_006980465.1ContigPYLL00000000
SAMN08610956
GEV2110
GCA_006980405.1ScaffoldPUWE00000000
SAMN08610927
GEV2050
GCA_006980375.1ScaffoldPUWA00000000
SAMN08610931
GEV2059
GCA_006980365.1ScaffoldPUVX00000000
SAMN08610934
GEV1911
GCA_006980385.1ScaffoldPUWB00000000
SAMN08610930
GEV2058
GCA_006980395.1ContigPYLK00000000
SAMN08610960
GEV2114
GCA_006980305.1ScaffoldPUVV00000000
SAMN08610936
GEV1913
GCA_006980285.1ScaffoldPUVU00000000
SAMN08610937
GEV1914
GCA_006980275.1ScaffoldPUVT00000000
SAMN08610938
GEV1915
GCA_006980315.1ContigPUVW00000000
SAMN08610935
GEV1912
GCA_006980245.1ScaffoldPUVS00000000
SAMN08610939
GEV1916
GCA_006980215.1ScaffoldPUVP00000000
SAMN08610943
GEV1920
GCA_006980225.1ScaffoldPUVR00000000
SAMN08610940
GEV1917
GCA_006980195.1ScaffoldPUVQ00000000
SAMN08610941
GEV1918
GCA_006980175.1ScaffoldPUVM00000000
SAMN08610946
GEV2067
GCA_006980165.1ScaffoldPUVN00000000
SAMN08610945
GEV2065
GCA_006980115.1ScaffoldPUVL00000000
SAMN08610947
GEV2072
GCA_006980095.1ScaffoldPUVK00000000
SAMN08610948
GEV2087
GCA_006980085.1ScaffoldPUVI00000000
SAMN08610950
GEV2089
GCA_006980075.1ScaffoldPUVJ00000000
SAMN08610949
GEV2088
GCA_006980055.1ScaffoldPUVF00000000
SAMN08610953
GEV2099
GCA_006980045.1ScaffoldPUVE00000000
SAMN08610954
GEV2108
GCA_006979965.1ScaffoldPUVA00000000
SAMN08610959
GEV2113
GCA_006979955.1ScaffoldPUUW00000000
SAMN08610964
GEV2118
GCA_006979985.1ScaffoldPUVD00000000
SAMN08610955
GEV2109
GCA_006979945.1ScaffoldPUUV00000000
SAMN08610965
GEV2119
GCA_006979975.1ScaffoldPUVC00000000
SAMN08610957
GEV2111
GCA_006979895.1ScaffoldPUUQ00000000
SAMN08610972
GEV2126
GCA_006979915.1ContigPYLI00000000
SAMN08610969
GEV2123
GCA_006979875.1ScaffoldPUUO00000000
SAMN08610974
GEV2128
GCA_006979855.1ScaffoldPUUK00000000
SAMN08610978
GEV2133
GCA_006980565.2Complete genomeSAMN08610925
GEV2048
SRA Data Details
ParameterValue
Data volume, Gbases11
Data volume, Mbytes6985

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