wastewater metagenome (ID 428383) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Nucleotide

Accession: PRJNA428383 ID: 428383

wastewater metagenome

Metagenomic Sequencing of a Groundwater Replenishment System in Orange County, CA

A series of samples were taken from the Orange County Groundwater Replenishment System (GWRS) to better understand the functional and taxonomic diversity of microorganisms present. More...

Accession	PRJNA428383
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	wastewater metagenome[Taxonomy ID: 527639] unclassified sequences; metagenomes; ecological metagenomes; wastewater metagenome
Submission	Registration date: 19-Aug-2019 Colorado School of Mines
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	19555
WGS master	95
SRA Experiments	13
Protein Sequences	238819
Other datasets
BioSample	107
Assembly	95

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

95
95

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_008017315.1	SSHE00000000	SAMN10026418	Bin_8_1	Acinetobacter sp.
GCA_008017255.1	SSHD00000000	SAMN10026419	Bin_8_5	Acinetobacter sp.
GCA_008012455.1	SSES00000000	SAMN10026484	Bin_1_8	Actinomycetota bacterium
GCA_008012465.1	SSET00000000	SAMN10026483	Bin_1_5	Actinomycetota bacterium
GCA_008017265.1	SSHC00000000	SAMN10026420	Bin_31_2	Aeromicrobium sp.
GCA_008017245.1	SSHB00000000	SAMN10026421	Bin_48_1	Afipia sp.
GCA_008017235.1	SSHA00000000	SAMN10026422	Bin_7_3	Alicycliphilus sp.
GCA_008017175.1	VKOJ00000000	SAMN10026424	Bin_7_6	Aquabacterium sp.
GCA_008017205.1	SSGZ00000000	SAMN10026423	Bin_7_4	Aquabacterium sp.
GCA_008015435.1	SSFO00000000	SAMN10026462	Bin_52_1	Aquipseudomonas alcaligenes
GCA_008015045.1	SSEU00000000	SAMN10026482	Bin_3_8	Bacteroidia bacterium
GCA_008015065.1	SSEQ00000000	SAMN10026486	Bin_30	Burkholderiaceae bacterium
GCA_008012415.1	SSER00000000	SAMN10026485	Bin_27_2	Burkholderiaceae bacterium
GCA_008012385.1	SSEP00000000	SAMN10026487	Bin_7_2	Burkholderiaceae bacterium
GCA_008017115.1	SSGW00000000	SAMN10026427	Bin_15_2	Burkholderiaceae bacterium
GCA_008015855.1	SSGK00000000	SAMN10026440	Bin_45_4	Candidatus Altimarinota bacterium
GCA_008011975.1	SSDS00000000	SAMN10026510	Bin_63_2	Candidatus Dojkabacteria bacterium
GCA_008012185.1	SSEE00000000	SAMN10026498	Bin_15_5	Candidatus Moraniibacteriota bacterium
GCA_008012175.1	SSEF00000000	SAMN10026497	Bin_68_2	Candidatus Moraniibacteriota bacterium
GCA_008012195.1	SSED00000000	SAMN10026499	Bin_15_6	Candidatus Moraniibacteriota bacterium
GCA_008015775.1	SSGE00000000	SAMN10026446	Bin_15_3	Candidatus Moraniibacteriota bacterium
GCA_008012515.1	SSEW00000000	SAMN10026480	Bin_57_2	Cellvibrionales bacterium
GCA_008017335.1	SSHF00000000	SAMN10026417	Bin_55_1	Chitinophagaceae bacterium
GCA_008012375.1	SSEO00000000	SAMN10026488	Bin_3_4	Chitinophagaceae bacterium
GCA_008017125.1	SSGV00000000	SAMN10026428	Bin_3_3	Chryseobacterium cucumeris
GCA_008017075.1	SSGU00000000	SAMN10026429	Bin_43_1	Chryseobacterium sp.
GCA_008017055.1	SSGS00000000	SAMN10026431	Bin_36_2	Crocinitomicaceae bacterium
GCA_008017025.1	SSGR00000000	SAMN10026432	Bin_43_5	Crocinitomicaceae bacterium
GCA_008017065.1	SSGT00000000	SAMN10026430	Bin_65	Crocinitomicaceae bacterium
GCA_008016995.1	SSGQ00000000	SAMN10026433	Bin_4_1	Cupriavidus sp.
GCA_008015945.1	VIGN00000000	SAMN10026434	Bin_11_5	Cyclobacteriaceae bacterium
GCA_008012365.1	SSEN00000000	SAMN10026489	Bin_11_4	Cyclobacteriaceae bacterium
GCA_008016975.1	SSGP00000000	SAMN10026435	Bin_25_4	Dechloromonas sp.
GCA_008012355.1	SSEM00000000	SAMN10026490	Bin_34	Desulfurellales bacterium
GCA_008016955.1	SSGO00000000	SAMN10026436	Bin_9_4	Dokdonella sp.
GCA_008012285.1	SSEK00000000	SAMN10026492	Bin_9_3	Elusimicrobiota bacterium
GCA_008016945.1	SSGN00000000	SAMN10026437	Bin_25_2	Flavobacteriales bacterium
GCA_008015935.1	SSGM00000000	SAMN10026438	Bin_23_2	Flavobacterium sp.
GCA_008015865.1	SSGL00000000	SAMN10026439	Bin_23_3	Flavobacterium sp.
GCA_008012255.1	SSEI00000000	SAMN10026494	Bin_14_5	Gammaproteobacteria bacterium
GCA_008012265.1	SSEJ00000000	SAMN10026493	Bin_14_3	Gammaproteobacteria bacterium
GCA_008012275.1	SSEH00000000	SAMN10026495	Bin_12_3	Hyphomicrobiaceae bacterium
GCA_008015885.1	SSGI00000000	SAMN10026442	Bin_24_2	Limnohabitans sp.
GCA_008015875.1	SSGJ00000000	SAMN10026441	Bin_21_3	Limnohabitans sp.
GCA_008015835.1	SSGH00000000	SAMN10026443	Bin_5_1	Lysobacter sp.
GCA_008015095.1	SSEV00000000	SAMN10026481	Bin_5_5	Lysobacteraceae bacterium
GCA_008015785.1	SSGG00000000	SAMN10026444	Bin_42_2	Methylophilus methylotrophus
GCA_008015755.1	SSGF00000000	SAMN10026445	Bin_55_2	Methylophilus sp.
GCA_008015685.1	SSGB00000000	SAMN10026449	Bin_1_1	Mycobacterium sp.
GCA_008015665.1	SSGA00000000	SAMN10026450	Bin_1_3	Mycobacterium sp.
GCA_008012155.1	SSEC00000000	SAMN10026500	Bin_29_1	Mycobacterium sp.
GCA_008015745.1	SSGD00000000	SAMN10026447	Bin_29_2	Mycolicibacter arupensis
GCA_008015735.1	SSGC00000000	SAMN10026448	Bin_26_2	Mycolicibacterium mageritense
GCA_008017145.1	SSGY00000000	SAMN10026425	Bin_44_1	Neisseriales bacterium
GCA_008017155.1	SSGX00000000	SAMN10026426	Bin_45_1	Neisseriales bacterium
GCA_008012115.1	SSEB00000000	SAMN10026501	Bin_35_3	Nevskiaceae bacterium
GCA_008012095.1	SSEA00000000	SAMN10026502	Bin_59_2	Nevskiaceae bacterium
GCA_008015675.1	SSFZ00000000	SAMN10026451	Bin_20_1	Niabella sp.
GCA_008015635.1	SSFX00000000	SAMN10026453	Bin_54_1	Nitrosomonas oligotropha
GCA_008015645.1	SSFY00000000	SAMN10026452	Bin_54_3	Nitrosomonas sp.
GCA_008015595.1	SSFW00000000	SAMN10026454	Bin_15_1	Nitrosomonas sp.
GCA_008015565.1	SSFV00000000	SAMN10026455	Bin_38_1	Nitrosomonas sp.
GCA_008015545.1	SSFU00000000	SAMN10026456	Bin_14_1	Novosphingobium sp.
GCA_008015535.1	SSFS00000000	SAMN10026458	Bin_19_2	Ottowia sp.
GCA_008015555.1	SSFT00000000	SAMN10026457	Bin_19_1	Ottowia sp.
GCA_008012035.1	SSDW00000000	SAMN10026506	Bin_51_4	Patescibacteria group bacterium
GCA_008015505.1	SSFR00000000	SAMN10026459	Bin_56_2	Pedobacter sp.
GCA_008015455.1	SSFP00000000	SAMN10026461	Bin_10_1	Polynucleobacter sp.
GCA_008015445.1	SSFN00000000	SAMN10026463	Bin_35_1	Pseudomonas monteilii
GCA_008015385.1	SSFL00000000	SAMN10026465	Bin_7_5	Pseudomonas sp.
GCA_008015405.1	SSFM00000000	SAMN10026464	Bin_52_2	Pseudomonas sp.
GCA_008015355.1	SSFK00000000	SAMN10026466	Bin_24_4	Pseudorhodobacter sp.
GCA_008015345.1	SSFJ00000000	SAMN10026467	Bin_14_4	Pseudoxanthomonas sp.
GCA_008015325.1	SSFI00000000	SAMN10026468	Bin_57_1	Rheinheimera sp.
GCA_008015315.1	SSFH00000000	SAMN10026469	Bin_4_3	Rhizobium sp.
GCA_008015245.1	SSFG00000000	SAMN10026470	Bin_48_2	Rhizobium sp.
GCA_008012065.1	SSDY00000000	SAMN10026504	Bin_25_1	Rhodocyclaceae bacterium
GCA_008012085.1	SSDZ00000000	SAMN10026503	Bin_17_3	Rhodocyclaceae bacterium
GCA_008012045.1	SSDX00000000	SAMN10026505	Bin_5_7	Rhodocyclaceae bacterium
GCA_008015235.1	SSFF00000000	SAMN10026471	Bin_24_1	Rhodoferax sp.
GCA_008012315.1	SSEL00000000	SAMN10026491	Bin_26_3	Rhodospirillaceae bacterium
GCA_008015265.1	SSFE00000000	SAMN10026472	Bin_64_3	Romboutsia sp.
GCA_008015465.1	SSFQ00000000	SAMN10026460	Bin_39_1	Roseateles sp.
GCA_008012005.1	SSDV00000000	SAMN10026507	Bin_26_1	Sphingomonadales bacterium
GCA_008011945.1	SSDU00000000	SAMN10026508	Bin_67	Spirochaetota bacterium
GCA_008012165.1	SSEG00000000	SAMN10026496	Bin_71	Spirochaetota bacterium
GCA_008015255.1	SSFD00000000	SAMN10026473	Bin_27_1	Thauera aminoaromatica
GCA_008011965.1	SSDT00000000	SAMN10026509	Bin_2_1	Thermomicrobiales bacterium
GCA_008015215.1	SSFC00000000	SAMN10026474	Bin_19_5	Thermomonas sp.
GCA_008015195.1	SSFB00000000	SAMN10026475	Bin_35_2	Thiobacillus sp.
GCA_008015135.1	SSEY00000000	SAMN10026478	Bin_8_3	Thiothrix sp.
GCA_008015155.1	SSFA00000000	SAMN10026476	Bin_56_1	Thiothrix sp.
GCA_008015145.1	SSEZ00000000	SAMN10026477	Bin_8_2	Thiothrix sp.
GCA_008015085.1	SSEX00000000	SAMN10026479	Bin_11_1	Tolumonas sp.
GCA_008011925.1	SSDR00000000	SAMN10026511	Bin_21_1	Zoogloea sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	112
Data volume, Mbytes	49596

BioProject

Result Filters

Display Settings:

Send to:

Links from Nucleotide

wastewater metagenome

Metagenomic Sequencing of a Groundwater Replenishment System in Orange County, CA

Supplemental Content

Related information

LinkOut to external resources

Recent activity