Sinorhizobium (ID 172127) - BioProject

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Accession: PRJNA172127 ID: 172127

Sinorhizobium

Population Genomics of the Facultatively Mutualistic Bacteria Sinorhizobium meliloti and S. medicae

To determine the genomic relatedness of diverse Sinorhizobium strains nodulating different legume genotypes

Accession	PRJNA172127
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Sinorhizobium[Taxonomy ID: 28105] Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium
Publications	Sugawara M et al., "Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.", Genome Biol, 2013 Feb 20;14(2):R17 Epstein B et al., "Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae.", PLoS Genet, 2012;8(8):e1002868
Grants	"A Medicago truncatula Hapmap as a Platform for Exploring the Genetics of Legume Symbioses" (Grant ID 0820005, National Science Foundation)
Submission	Registration date: 5-Nov-2019 Medicago Hapmap Project - National Center for Genome Resources
Related Resources	Medicago Hapmap Site
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	48
SRA Experiments	50
Publications
PubMed	2
PMC	2
Other datasets
BioSample	50
Assembly	48

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

44
4
48

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_009601405.1	WISZ00000000	SAMN00766438	USDA205	Sinorhizobium fredii
GCA_009601515.1	WITA00000000	SAMN00766439	USDA207	Sinorhizobium fredii
GCA_009601495.1	WISD00000000	SAMN00766416	M102	Sinorhizobium medicae
GCA_009601305.1	WISI00000000	SAMN00766421	M2	Sinorhizobium medicae
GCA_009601295.1	WISF00000000	SAMN00766418	M161	Sinorhizobium medicae
GCA_009601285.1	WISB00000000	SAMN00766414	M1	Sinorhizobium medicae
GCA_009601655.1	WISK00000000	SAMN00766423	M22	Sinorhizobium medicae
GCA_009599775.1	WIRT00000000	SAMN00766406	KH36b	Sinorhizobium medicae
GCA_009599705.1	WISQ00000000	SAMN00766429	M58	Sinorhizobium medicae
GCA_009599955.1	WIRZ00000000	SAMN00766412	KH53a	Sinorhizobium medicae
GCA_009599935.1	WIRH00000000	SAMN00766392	A321	Sinorhizobium medicae
GCA_009599905.1	WIRU00000000	SAMN00766407	KH36c	Sinorhizobium medicae
GCA_009599855.1	WISA00000000	SAMN00766413	KH53b	Sinorhizobium medicae
GCA_009599825.1	WIRV00000000	SAMN00766408	KH36d	Sinorhizobium medicae
GCA_009599835.1	WIRW00000000	SAMN00766409	KH46b	Sinorhizobium meliloti
GCA_009599805.1	WIRQ00000000	SAMN00766403	KH30a	Sinorhizobium meliloti
GCA_009599845.1	WIRP00000000	SAMN00766402	KH16b	Sinorhizobium meliloti
GCA_009599945.1	WIRY00000000	SAMN00766411	KH48e	Sinorhizobium meliloti
GCA_009599925.1	WIRX00000000	SAMN00766410	KH46c	Sinorhizobium meliloti
GCA_009599725.1	WIRR00000000	SAMN00766404	KH35b	Sinorhizobium meliloti
GCA_009599645.1	WIRM00000000	SAMN00766399	HM013-1	Sinorhizobium meliloti
GCA_009599605.1	WIRK00000000	SAMN00766396	HM007-12	Sinorhizobium meliloti
GCA_009599625.1	WIRO00000000	SAMN00766401	KH12g	Sinorhizobium meliloti
GCA_009599635.1	WIRI00000000	SAMN00766393	HM006-1	Sinorhizobium meliloti
GCA_009599615.1	WIRN00000000	SAMN00766400	HM015-1	Sinorhizobium meliloti
GCA_009599735.1	WISP00000000	SAMN00766428	M30	Sinorhizobium meliloti
GCA_009599715.1	WIRS00000000	SAMN00766405	KH35c	Sinorhizobium meliloti
GCA_009600005.1	WIRL00000000	SAMN00766398	HM007-17	Sinorhizobium meliloti
GCA_009600055.1	WIRJ00000000	SAMN00766394	HM007-10	Sinorhizobium meliloti
GCA_009601385.1	WISX00000000	SAMN00766436	USDA1002	Sinorhizobium meliloti
GCA_009601415.1	WISW00000000	SAMN00766435	T094	Sinorhizobium meliloti
GCA_009601355.1	WISV00000000	SAMN00766434	T073	Sinorhizobium meliloti
GCA_009601325.1	WISC00000000	SAMN00766415	M10	Sinorhizobium meliloti
GCA_009601115.1	WISN00000000	SAMN00766426	M268	Sinorhizobium meliloti
GCA_009601625.1	WIST00000000	SAMN00766432	Rm41	Sinorhizobium meliloti
GCA_009601615.1	WISJ00000000	SAMN00766422	M210	Sinorhizobium meliloti
GCA_009601605.1	WISU00000000	SAMN00766433	T027	Sinorhizobium meliloti
GCA_009601585.1	WISE00000000	SAMN00766417	M156	Sinorhizobium meliloti
GCA_009601525.1	WISH00000000	SAMN00766420	M195	Sinorhizobium meliloti
GCA_009601485.1	WISG00000000	SAMN00766419	M162	Sinorhizobium meliloti
GCA_009601255.1	WISO00000000	SAMN00766427	M270	Sinorhizobium meliloti
GCA_009601235.1	WISS00000000	SAMN00766431	N6B7	Sinorhizobium meliloti
GCA_009601205.1	WISM00000000	SAMN00766425	M249	Sinorhizobium meliloti
GCA_009601195.1	WISR00000000	SAMN00766430	N6B1	Sinorhizobium meliloti
GCA_009601185.1	WISL00000000	SAMN00766424	M243	Sinorhizobium meliloti
GCA_009601435.1	WISY00000000	SAMN00766437	USDA1021	Sinorhizobium meliloti
GCA_009601395.1	WITB00000000	SAMN00766440	USDA4893	Sinorhizobium saheli
GCA_009601505.1	WITC00000000	SAMN00766441	USDA4894	Sinorhizobium terangae

SRA Data Details

Parameter	Value
Data volume, Gbases	57
Data volume, Mbytes	30005

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Sinorhizobium

Population Genomics of the Facultatively Mutualistic Bacteria Sinorhizobium meliloti and S. medicae

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