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Accession: PRJEB31266 ID: 522726

Metagenomic sequencing of cattle

Metagenomic sequencing of the rumen of 240 cattle from Scotland

Ruminants provide essential nutrition for billions of people worldwide. The rumen is a specialised stomach adapted to the breakdown of plant-derived complex polysaccharides, and collectively the rumen microbiota encode the thousands of enzymes responsible. More...
AccessionPRJEB31266
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 15-Feb-2019
THE ROSLIN INSTITUTE
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)123535
WGS master4934
SRA Experiments244
Other datasets
BioSample5176
Assembly4934
Assembly details:
Assembly levelNumber of Assemblies
3713
1220
4933
AssemblyLevelWGSBioSampleTaxonomy
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GCA_902780595.1ScaffoldCACZGE000000000SAMEA6150720
GCA_902780865.1ScaffoldCACZHC000000000SAMEA6150748
GCA_902801025.1ScaffoldCADCGZ000000000SAMEA6152771
GCA_902800755.1ScaffoldCADCFU000000000SAMEA6152747
GCA_902802825.1ScaffoldCADCNV000000000SAMEA6152957
GCA_902802935.1ContigCADCNZ000000000SAMEA6152963
GCA_902802945.1ScaffoldCADCOC000000000SAMEA6152960
GCA_902802585.1ScaffoldCADCMR000000000SAMEA6152922
GCA_902801705.1ScaffoldCADCJF000000000SAMEA6152839
GCA_902801915.1ContigCADCJV000000000SAMEA6152850
GCA_902801985.1ScaffoldCADCKD000000000SAMEA6152862
GCA_902803855.1ContigCADCRP000000000SAMEA6153054
GCA_902803135.1ContigCADCPA000000000SAMEA6152980
GCA_902803165.1ContigCADCOS000000000SAMEA6152983
GCA_902803265.1ContigCADCPD000000000SAMEA6152996
GCA_902803325.1ContigCADCPO000000000SAMEA6153004
GCA_902781415.1ScaffoldCACZJI000000000SAMEA6150806
GCA_902781205.1ScaffoldCACZIL000000000SAMEA6150786
GCA_902777245.1ScaffoldCACYTC000000000SAMEA6150383
GCA_902776105.1ScaffoldCACYPA000000000SAMEA6150271
GCA_902791645.1ScaffoldCADAWI000000000SAMEA6151824
GCA_902788475.1ScaffoldCADAKK000000000SAMEA6151511
GCA_902760885.1ScaffoldCACWIK000000000SAMEA6148739
GCA_902803895.1ContigCADCRQ000000000SAMEA6153052
GCA_902803655.1ContigCADCQQ000000000SAMEA6153028
SRA Data Details
ParameterValue
Data volume, Gbases6,404
Data volume, Tbytes2.90

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