ID 473419 - BioProject

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Accession: PRJNA473419 ID: 473419

Ghana AMR research project organized by the TMDU and NMIMR

See Genome Information for Escherichia coli

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9410 additional projects are related by organism.

Our aim of the project is to investigate the current status of antimicrobial resistance among clinical isolates from Ghana, and further to explore major resistance mechanisms involved.

Accession	PRJNA473419
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 8-Aug-2018 Tokyo Medical and Dental University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	146
WGS master	14
Genomic DNA	132
SRA Experiments	75
Protein Sequences	158052
Other datasets
BioSample	122
Assembly	52
Supplementary data
Base modification	1

Assembly details:

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Assembly level

Number of Assemblies

37
1
14
52

Assembly	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_012931665.1		3	SAMN14667517	Ab-C63	Acinetobacter baumannii
GCA_012931645.1		5	SAMN14667515	Ab-B004d-c	Acinetobacter baumannii
GCA_012931625.1		6	SAMN14667516	Ab-D10a-a	Acinetobacter baumannii
GCA_012931605.1		4	SAMN14667518	Ab-C102	Acinetobacter baumannii
GCA_026651405.1		6	SAMN30101264	BC11	Aeromonas caviae
GCA_026651325.1		5	SAMN30100912	BC02	Aeromonas caviae
GCA_026651305.1		5	SAMN30100875	BC01	Aeromonas caviae
GCA_026651385.1		1	SAMN30101213	BC05	Aeromonas dhakensis
GCA_026651365.1		1	SAMN30100966	BC04	Aeromonas dhakensis
GCA_026651345.1		1	SAMN30100940	BC03	Aeromonas dhakensis
GCA_026651525.1		2	SAMN30120839	BC18	Aeromonas dhakensis
GCA_026651465.1		1	SAMN30118293	BC15	Aeromonas dhakensis
GCA_028764875.1	JARADD000000000		SAMN33317309	CA4	Aeromonas dhakensis
GCA_026651505.1		1	SAMN30118295	BC16	Aeromonas hydrophila
GCA_026651545.1		1	SAMN30120841	BC19	Aeromonas hydrophila
GCA_026651445.1		1	SAMN30118181	BC13	Aeromonas hydrophila
GCA_028765305.1	JARADG000000000		SAMN33317306	AS12	Aeromonas hydrophila
GCA_028765285.1	JARADF000000000		SAMN33317307	CL1	Aeromonas hydrophila
GCA_026651485.1		1	SAMN30118332	BC17	Aeromonas jandaei
GCA_026651585.1		2	SAMN30118242	BC14	Aeromonas sp. BC14
GCA_029580675.1		2	SAMN33820436	ENRHS3	Clostridium perfringens
GCA_029580815.1		2	SAMN33826312	ENRHS14	Clostridium perfringens
GCA_029580795.1		2	SAMN33826306	ENRHS10	Clostridium perfringens
GCA_029580775.1		2	SAMN33824413	ENRHS7	Clostridium perfringens
GCA_029581155.1		3	SAMN33826337	ENRHS16	Clostridium perfringens
GCA_029580895.1		2	SAMN33824391	ENRHS4	Clostridium perfringens
GCA_029541585.1		2	SAMN33819949	ENRHS1	Clostridium perfringens
GCA_023920605.1		4	SAMN26208495	EFN743	Enterobacter cloacae
GCA_023337065.1	JAKSGD000000000		SAMN26011978	EFN743	Enterobacter cloacae
GCA_028765355.1	JARADI000000000		SAMN33317304	AS8	Enterobacter kobei
GCA_028765025.1	JARADJ000000000		SAMN33317301	AS2	Enterobacter kobei
GCA_028764845.1	JARADL000000000		SAMN33317303	AS4	Enterobacter roggenkampii
GCA_023195715.1		12	SAMN27117675	C3-17	Enterobacter roggenkampii
GCA_028765105.1	JARADK000000000		SAMN33317300	AS1	Enterobacter soli
GCA_003367575.1		2	SAMN09273490	ST410	Escherichia coli
GCA_019355495.1		5	SAMN15486685	Ec55	Escherichia coli
GCA_019355475.1		5	SAMN15486686	EC45	Escherichia coli
GCA_019355455.1		6	SAMN15486687	Ec42	Escherichia coli
GCA_019720795.1		5	SAMN20802105	Ec1079	Escherichia coli
GCA_016432805.1		5	SAMN15945289	1EC187	Escherichia coli
GCA_016432785.1		7	SAMN15945290	1EC213	Escherichia coli
GCA_022605305.1		3	SAMN26549876	C-21-18	Klebsiella oxytoca
GCA_023920325.1		8	SAMN26139404	EFN 299	Klebsiella pneumoniae
GCA_023337055.1	JAKSGE000000000		SAMN26011977	EFN299	Klebsiella pneumoniae
GCA_028765315.1	JARADE000000000		SAMN33317308	CA1	Klebsiella quasipneumoniae
GCA_023337115.1	JAKSGF000000000		SAMN26011976	EFN262	Klebsiella quasipneumoniae
GCA_023920245.1		7	SAMN26096228	EF262	Klebsiella quasipneumoniae
GCA_028765205.1	JARADH000000000		SAMN33317305	AS10	Klebsiella variicola
GCA_028765255.1	JARADM000000000		SAMN33317302	AS3	Klebsiella variicola
GCA_039718995.1		1	SAMN36900137	Tg_9B	Metapseudomonas otitidis
GCA_026651425.1		1	SAMN30101387	BC12	Metapseudomonas otitidis
GCA_028863955.1	JARBFW000000000		SAMN33317310	CA6	Serratia nevei

SRA Data Details

Parameter	Value
Data volume, Gbases	113
Data volume, Mbytes	54266

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Ghana AMR research project organized by the TMDU and NMIMR

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