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Accession: PRJNA531377 ID: 531377

Lactiplantibacillus plantarum strain:DSMZ 20174

Lactiplantibacillus plantarum strain:DSMZ 20174 Genome sequencing and assembly

See Genome Information for Lactiplantibacillus plantarum
Complete sequencing and de novo genome assembly (based on a hybrid strategy of combining PacBio with Illumina) for proteogenomic studies. More...
AccessionPRJNA531377
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismLactiplantibacillus plantarum[Taxonomy ID: 1590]
Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus; Lactiplantibacillus plantarum
Publications
  • Omasits U et al., "An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics.", Genome Res, 2017 Dec;27(12):2083-2095
  • Becker N et al., "Human intestinal microbiota: characterization of a simplified and stable gnotobiotic rat model.", Gut Microbes, 2011 Jan-Feb;2(1):25-33
Grants
  • "Development of a novel, integrative proteogenomics approach to discover the entire protein-coding potential of prokaryotic genomes" (Grant ID 31003A-156320, Swiss National Science Foundation)
  • "Small Proteins in Prokaryotes, an Unexplored World (SPP 2002)" (Grant ID 379643916, Deutsche Forschungsgemeinschaft)
SubmissionRegistration date: 10-Aug-2020
Helmholtz Centre for Environmental Research - UFZ
Locus Tag PrefixE5260
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)2
SRA Experiments3
Protein Sequences2980
Publications
PubMed2
PMC1
Other datasets
BioSample1
Assembly1
SRA Data Details
ParameterValue
Data volume, Gbases6
Data volume, Mbytes19017

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