wastewater metagenome (ID 668302) - BioProject

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Accession: PRJDB9036 ID: 668302

wastewater metagenome

Metagenomic survey and whole genome sequencing of antimicrobial resistant bacteria in Japanese hospital sewage

This project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam resistant Enterobacteriaceae) in Japanese hospital sewage.

Accession	PRJDB9036
Organism	wastewater metagenome[Taxonomy ID: 527639] unclassified sequences; metagenomes; ecological metagenomes; wastewater metagenome
Submission	Registration date: 8-Oct-2020 Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	177
SRA Experiments	326
Protein Sequences	160989
Other datasets
BioSample	326
Assembly	32

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

32
32

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_015134625.1	4	SAMD00195843	STW0522-01	Citrobacter freundii
GCA_015134795.1	5	SAMD00195860	STW0522-19	Citrobacter freundii
GCA_015137255.1	4	SAMD00195955	STN0717-36	Citrobacter portucalensis
GCA_015137095.1	8	SAMD00195946	STN0717-27	Citrobacter portucalensis
GCA_015135215.1	10	SAMD00195870	STW0522-30	Citrobacter portucalensis
GCA_015135075.1	5	SAMD00195868	STW0522-27	Citrobacter portucalensis
GCA_015134935.1	5	SAMD00195867	STW0522-26	Citrobacter portucalensis
GCA_015138175.1	6	SAMD00195990	STN0717-72	Citrobacter portucalensis
GCA_015137655.1	1	SAMD00195975	STN0717-56	Enterobacter bugandensis
GCA_015138375.1	6	SAMD00195991	STN0717-73	Enterobacter cloacae
GCA_015137855.1	1	SAMD00195978	STN0717-60	Enterobacter cloacae
GCA_015137995.1	3	SAMD00195982	STN0717-64	Enterobacter hormaechei
GCA_015137465.1	10	SAMD00195972	STN0717-53	Enterobacter kobei
GCA_015136055.1	13	SAMD00195902	STW0522-62	Enterobacter kobei
GCA_015135855.1	6	SAMD00195900	STW0522-60	Enterobacter kobei
GCA_015135595.1	7	SAMD00195891	STW0522-51	Enterobacter kobei
GCA_015136315.1	8	SAMD00195906	STW0522-66	Enterobacter roggenkampii
GCA_015135355.1	3	SAMD00195871	STW0522-31	Escherichia coli
GCA_015138575.1	2	SAMD00196001	THO-003	Escherichia coli
GCA_015136895.1	4	SAMD00195939	STN0717-20	Escherichia coli
GCA_015136715.1	4	SAMD00195931	STN0717-11	Escherichia coli
GCA_015139735.1	4	SAMD00196013	THO-015	Escherichia coli
GCA_015139375.1	7	SAMD00196008	THO-010	Escherichia coli
GCA_015139155.1	4	SAMD00196006	THO-008	Escherichia coli
GCA_015138955.1	3	SAMD00196004	THO-006	Escherichia coli
GCA_015139575.1	2	SAMD00196009	THO-011	Klebsiella michiganensis
GCA_015138775.1	6	SAMD00196002	THO-004	Klebsiella pneumoniae
GCA_015139975.1	4	SAMD00196015	THO-017	Klebsiella pneumoniae
GCA_015135515.1	7	SAMD00195879	STW0522-39	Klebsiella quasipneumoniae
GCA_015135575.1	12	SAMD00195884	STW0522-44	Klebsiella sp. STW0522-44
GCA_015136515.1	5	SAMD00195912	STW0522-72	Pseudomonas monteilii
GCA_015135635.1	8	SAMD00195896	STW0522-56	Raoultella planticola

SRA Data Details

Parameter	Value
Data volume, Gbases	210
Data volume, Mbytes	96349

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wastewater metagenome

Metagenomic survey and whole genome sequencing of antimicrobial resistant bacteria in Japanese hospital sewage

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