Escherichia coli (ID 554638) - BioProject

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Accession: PRJNA554638 ID: 554638

Escherichia coli

ESBL producing Escherichia coli

See Genome Information for Escherichia coli

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9368 additional projects are related by organism.

ESBL-producing E. coli isolated at the University Hospital Basel and Felix Platter Hospital, as part of a hospital transmission study.

Accession	PRJNA554638
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications (total 3) Less...	Benz F et al., "Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo.", ISME J, 2021 Mar;15(3):862-878 More... Benz F et al., "Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo.", ISME J, 2021 Mar;15(3):862-878 Bakkeren E et al., "Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut.", Nature, 2019 Sep;573(7773):276-280 Published online: Huisman J et al., "The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogenies", Philosophical Transactions of the Royal Society B: Biological Sciences, 2022;377(1861) Less...
Grants	"Towards quantification of the contribution of plasmids to the spread of antibiotic resistance" (Grant ID 407240-167121, Swiss National Science Foundation)
Submission	Registration date: 12-Sep-2019 - ETH Zurich - University Hospital Basel
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	30
WGS master	26
Genomic DNA	4
SRA Experiments	72
Protein Sequences	4721
Publications
PubMed	2
PMC	2
Other datasets
BioSample	27
Assembly	27

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
26
27

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_008370755.1		4	SAMN12275742	ESBL 15	Escherichia coli
GCA_016433325.1	JAEFCK000000000		SAMN17073775	ESBL01	Escherichia coli
GCA_016433315.1	JAEFCL000000000		SAMN17073776	ESBL11	Escherichia coli
GCA_016433305.1	JAEFCM000000000		SAMN17073777	ESBL13	Escherichia coli
GCA_016433285.1	JAEFCN000000000		SAMN17073778	ESBL17	Escherichia coli
GCA_016433265.1	JAEFCJ000000000		SAMN17073774	8178	Escherichia coli
GCA_016433195.1	JAEFCS000000000		SAMN17073783	Z1331	Escherichia coli
GCA_016433185.1	JAEFCO000000000		SAMN17073779	ESBL21	Escherichia coli
GCA_016433165.1	JAEFCR000000000		SAMN17073782	Z1269	Escherichia coli
GCA_016433175.1	JAEFCP000000000		SAMN17073780	ESBL22	Escherichia coli
GCA_016433205.1	JAEFCQ000000000		SAMN17073781	ESBL25	Escherichia coli
GCA_020908065.1	JAJJVU000000000		SAMN23081060	ESBL18	Escherichia coli
GCA_020907745.1	JAJJWG000000000		SAMN23081048	ESBL2	Escherichia coli
GCA_020907725.1	JAJJWF000000000		SAMN23081049	ESBL3	Escherichia coli
GCA_020907695.1	JAJJWE000000000		SAMN23081050	ESBL4	Escherichia coli
GCA_020907685.1	JAJJWD000000000		SAMN23081051	ESBL5	Escherichia coli
GCA_020907655.1	JAJJWB000000000		SAMN23081053	ESBL7	Escherichia coli
GCA_020907645.1	JAJJWC000000000		SAMN23081052	ESBL6	Escherichia coli
GCA_020907615.1	JAJJVZ000000000		SAMN23081055	ESBL9	Escherichia coli
GCA_020907605.1	JAJJWA000000000		SAMN23081054	ESBL8	Escherichia coli
GCA_020907585.1	JAJJVX000000000		SAMN23081057	ESBL12	Escherichia coli
GCA_020907565.1	JAJJVY000000000		SAMN23081056	ESBL10	Escherichia coli
GCA_020907545.1	JAJJVW000000000		SAMN23081058	ESBL14	Escherichia coli
GCA_020907525.1	JAJJVV000000000		SAMN23081059	ESBL16	Escherichia coli
GCA_020907505.1	JAJJVT000000000		SAMN23081061	ESBL19	Escherichia coli
GCA_020907485.1	JAJJVS000000000		SAMN23081062	ESBL20	Escherichia coli
GCA_020907465.1	JAJJVR000000000		SAMN23081063	ESBL26	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	39
Data volume, Mbytes	22534

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Escherichia coli

ESBL producing Escherichia coli

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