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Accession: PRJNA484519 ID: 484519

marine metagenome

Bacterial dimethylsulfoniopropionate biosynthesis in the East China Sea Raw sequence reads

Dimethylsulfoniopropionate (DMSP), is one of the Earth’s most abundant organosulfur molecules, and the major precursor for gaseous dimethyl sulfide (DMS). More...
AccessionPRJNA484519
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmarine metagenome[Taxonomy ID: 408172]
unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
PublicationsLiu J et al., "Bacterial Dimethylsulfoniopropionate Biosynthesis in the East China Sea.", Microorganisms, 2021 Mar 22;9(3)
Grants
  • "Contribution of marine heterotrophic bacteria to the production of DMSP/DMS and mechanisms in driving sulfur cycle: a case study of the Mariana Trench" (Grant ID 91751202, Natural Science Foundation of China)
SubmissionRegistration date: 27-Jan-2021
Ocean University of China
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)58
SRA Experiments52
Publications
PubMed1
PMC1
Other datasets
BioSample71
Assembly58
Assembly details:
Assembly levelNumber of Assemblies
47
11
58
AssemblyLevelWGSBioSampleInfraspecies IdTaxonomy
GCA_018222915.1ScaffoldJAAEZI000000000SAMN13827038
P03SST1bin.24
GCA_018222875.1ScaffoldJAAEZL000000000SAMN13827041
P03SST1bin.30
GCA_018222835.1ScaffoldJAAEZN000000000SAMN13827043
P03SST1Cbin.3
GCA_018222785.1ScaffoldJAAEZP000000000SAMN13827045
P03SST1Cbin.13
GCA_018222725.1ScaffoldJAAEZS000000000SAMN13827048
P03SST1Cbin.16
GCA_018222865.1ScaffoldJAAEZM000000000SAMN13827042
P03SST1Cbin.2
GCA_018222605.1ScaffoldJAAEZZ000000000SAMN13827055
P03SWT1bin.4
GCA_018222965.1ScaffoldJAAEZH000000000SAMN13827037
P03SST1bin.21
GCA_018222465.1ScaffoldJAAFAF000000000SAMN13827061
P03SWT1Cbin.7
GCA_018223285.1ScaffoldJAAEYR000000000SAMN13827021
P03BWT1bin.1
GCA_018223235.1ScaffoldJAAEYT000000000SAMN13827023
P03BWT1bin.4
GCA_018223225.1ScaffoldJAAEYS000000000SAMN13827022
P03BWT1bin.2
GCA_018223065.1ScaffoldJAAEZC000000000SAMN13827032
P03SST1bin.15
GCA_018223005.1ScaffoldJAAEZE000000000SAMN13827034
P03SST1bin.17
GCA_018222985.1ScaffoldJAAEZG000000000SAMN13827036
P03SST1bin.20
GCA_018222515.1ScaffoldJAAFAE000000000SAMN13827060
P03SWT1Cbin.6
GCA_018222485.1ScaffoldJAAFAG000000000SAMN13827062
P03SWT1Cbin.8
GCA_018222405.1ScaffoldJAAFAI000000000SAMN13827064
P03SWT1Cbin.13
GCA_018222635.1ScaffoldJAAEZY000000000SAMN13827054
P03SWT1bin.3
GCA_018222935.1ScaffoldJAAEZJ000000000SAMN13827039
P03SST1bin.25
GCA_018222905.1ScaffoldJAAEZK000000000SAMN13827040
P03SST1bin.27
GCA_018222825.1ScaffoldJAAEZO000000000SAMN13827044
P03SST1Cbin.11
GCA_018222695.1ScaffoldJAAEZV000000000SAMN13827051
P03SWT0bin.7
GCA_018424645.1ContigQTKW00000000SAMN09767127
LZD012
GCA_018424605.1ContigQTKT00000000SAMN09767130
AESS41
GCA_018424725.1ContigQTNR00000000SAMN09767124
DSW18
GCA_018424685.1ContigQTKX00000000SAMN09767126
ESS08
GCA_018222745.1ScaffoldJAAEZR000000000SAMN13827047
P03SST1Cbin.15
GCA_018223185.1ScaffoldJAAEYW000000000SAMN13827026
P03BWT1Cbin.2
GCA_018223165.1ScaffoldJAAEYX000000000SAMN13827027
P03SST1bin.2
GCA_018223265.1ScaffoldJAAEYU000000000SAMN13827024
P03BWT1bin.6
GCA_018223125.1ScaffoldJAAEZA000000000SAMN13827030
P03SST1bin.12
GCA_018223035.1ScaffoldJAAEZD000000000SAMN13827033
P03SST1bin.16
GCA_018223085.1ScaffoldJAAEZB000000000SAMN13827031
P03SST1bin.14
GCA_018222585.1ScaffoldJAAFAB000000000SAMN13827057
P03SWT1bin.7
GCA_018222565.1ContigJAAFAA000000000SAMN13827056
P03SWT1bin.6
GCA_018222665.1ScaffoldJAAEZW000000000SAMN13827052
P03SWT0bin.10
GCA_018222505.1ScaffoldJAAFAD000000000SAMN13827059
P03SWT1Cbin.3
GCA_018222615.1ScaffoldJAAEZX000000000SAMN13827053
P03SWT1bin.1
GCA_018222545.1ScaffoldJAAFAC000000000SAMN13827058
P03SWT1Cbin.1
GCA_018223205.1ScaffoldJAAEYV000000000SAMN13827025
P03BWT1Cbin.1
GCA_018424625.1ContigQTKU00000000SAMN09767129
AESS21
GCA_016758075.1ContigWJSC00000000SAMN13151301
BDSS02
GCA_018424665.1ContigQTKV00000000SAMN09767128
BEBW28
GCA_018424695.1ContigQTNQ00000000SAMN09767125
EBW16
GCA_018222805.1ScaffoldJAAEZQ000000000SAMN13827046
P03SST1Cbin.14
GCA_018223135.1ScaffoldJAAEYZ000000000SAMN13827029
P03SST1bin.10
GCA_018223105.1ScaffoldJAAEYY000000000SAMN13827028
P03SST1bin.8
GCA_018223025.1ScaffoldJAAEZF000000000SAMN13827035
P03SST1bin.18
GCA_018223325.1ScaffoldJAAEYQ000000000SAMN13827020
ME3SWT0bin.4
GCA_018223305.1ScaffoldJAAEYP000000000SAMN13827019
ME3SWT0bin.2
GCA_018222685.1ScaffoldJAAEZU000000000SAMN13827050
P03SWT0bin.5
GCA_018222765.1ScaffoldJAAEZT000000000SAMN13827049
P03SWT0bin.3
GCA_018222375.1ContigJAAFAM000000000SAMN13827068
P11BWT0bin.7
GCA_018222355.1ScaffoldJAAFAJ000000000SAMN13827065
P03SWT1Cbin.14
GCA_018222345.1ScaffoldJAAFAL000000000SAMN13827067
P11BWT0bin.6
GCA_018222445.1ScaffoldJAAFAH000000000SAMN13827063
P03SWT1Cbin.11
GCA_018222385.1ContigJAAFAK000000000SAMN13827066
P11BWT0bin.4
SRA Data Details
ParameterValue
Data volume, Gbases22
Data volume, Mbytes10463

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