Clostridioides difficile (ID 524299) - BioProject

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Accession: PRJNA524299 ID: 524299

Clostridioides difficile

Linking Clostridium difficile genome structure, microbiome composition, and host metabolomic signatures to disease severity in a pediatric inflammatory bowel disease cohort

See Genome Information for Clostridioides difficile

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744 additional projects are related by organism.

C. difficile strains were isolated from 27 samples and sequenced using both the Oxford

Nanopore MinION and Illumina sequencing platforms. More...

Accession	PRJNA524299
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Clostridioides difficile[Taxonomy ID: 1496] Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile
Submission	Registration date: 4-May-2021 University of Pennsylvania
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	66
WGS master	6
Genomic DNA	60
Protein Sequences	85629
Other datasets
BioSample	29
Assembly	29

Assembly details:

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Assembly level

Number of Assemblies

15
8
6
29

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_018264005.1	SMNN00000000		SAMN11021925	Cd27	Clostridioides difficile
GCA_018263955.1	SMNL00000000		SAMN11021923	Cd25	Clostridioides difficile
GCA_018263895.1	SMNM00000000		SAMN11021924	Cd26	Clostridioides difficile
GCA_018264015.1	SMNJ00000000		SAMN11021918	Cd20	Clostridioides difficile
GCA_018264045.1	SMNI00000000		SAMN11021917	Cd19	Clostridioides difficile
GCA_018263995.1	SMNK00000000		SAMN11021920	Cd22	Clostridioides difficile
GCA_018885045.1		4	SAMN11021899	Cd1	Clostridioides difficile
GCA_018885025.1		4	SAMN11021900	Cd2	Clostridioides difficile
GCA_018885005.1		4	SAMN11021901	Cd3	Clostridioides difficile
GCA_018884985.1		1	SAMN11021902	Cd4	Clostridioides difficile
GCA_018884965.1		1	SAMN11021904	Cd6	Clostridioides difficile
GCA_018884945.1		4	SAMN11021903	Cd5	Clostridioides difficile
GCA_018884925.1		4	SAMN11021905	Cd7	Clostridioides difficile
GCA_018884905.1		4	SAMN11021906	Cd8	Clostridioides difficile
GCA_018884885.1		1	SAMN11021907	Cd9	Clostridioides difficile
GCA_018884865.1		3	SAMN11021908	Cd10	Clostridioides difficile
GCA_018884845.1		5	SAMN11021909	Cd11	Clostridioides difficile
GCA_018884825.1		1	SAMN11021910	Cd12	Clostridioides difficile
GCA_018884805.1		1	SAMN11021911	Cd13	Clostridioides difficile
GCA_018884785.1		5	SAMN11021913	Cd15	Clostridioides difficile
GCA_018884765.1		2	SAMN11021912	Cd14	Clostridioides difficile
GCA_018884745.1		1	SAMN11021914	Cd16	Clostridioides difficile
GCA_018884725.1		1	SAMN11021915	Cd17	Clostridioides difficile
GCA_018884705.1		5	SAMN11021916	Cd18	Clostridioides difficile
GCA_018884685.1		1	SAMN11021919	Cd21	Clostridioides difficile
GCA_018884665.1		3	SAMN11021921	Cd23	Clostridioides difficile
GCA_018884645.1		1	SAMN11021922	Cd24	Clostridioides difficile
GCA_018884625.1		3	SAMN11021926	Cd28	Clostridioides difficile
GCA_018884605.1		1	SAMN11021927	Cd29	Clostridioides difficile

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Clostridioides difficile

Linking Clostridium difficile genome structure, microbiome composition, and host metabolomic signatures to disease severity in a pediatric inflammatory bowel disease cohort

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