human saliva metagenome (ID 612999) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Nucleotide

Accession: PRJDB9452 ID: 612999

human saliva metagenome

Shotgun metagenome sequencing of human saliva using HiSeq

>30Gb sequence data per sample were generated for joint analysis of > 30Gb long read sequence data of PromethION (JGAS00000000186 in JGA database) The Data Access Committee of the National Bioscience Database Center (NBDC) approved that this personal genetic data were made published according to NBDC data sharing guidelines (http://humandbs.biosciencedbc.jp/).

Accession	PRJDB9452
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human saliva metagenome[Taxonomy ID: 1679718] unclassified sequences; metagenomes; organismal metagenomes; human saliva metagenome
Grants	19H04846, Ministry of Education, Culture, Sports, Science and Technology
Submission	Registration date: 16-Mar-2020 Antimicrobial Resistance Research Center, National Institute of Infectious Diseases
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	238
WGS master	114
SRA Experiments	8
Other datasets
BioSample	114
Assembly	114

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

114
114

Assembly	WGS	BioSample	Taxonomy
GCA_916438635.1	CAKAFH000000000	SAMEA10110165	Abiotrophia defectiva
GCA_916438575.1	CAKAFR000000000	SAMEA10110205	Actinomyces graevenitzii
GCA_916438615.1	CAKAFF000000000	SAMEA10110153	Actinomyces oris
GCA_916438605.1	CAKAFJ000000000	SAMEA10110210	Aggregatibacter kilianii
GCA_916438845.1	CAKAFU000000000	SAMEA10110167	Alloprevotella tannerae
GCA_916438805.1	CAKAGW000000000	SAMEA10110158	Alloscardovia omnicolens
GCA_916438455.1	CAKAGQ000000000	SAMEA10110193	Arachnia propionica
GCA_916438975.1	CAKAGE000000000	SAMEA10110200	Bifidobacterium longum
GCA_916438545.1	CAKAEW000000000	SAMEA10110150	Corynebacterium freiburgense
GCA_916438685.1	CAKAFI000000000	SAMEA10110209	Corynebacterium mustelae
GCA_916438345.1	CAKAEZ000000000	SAMEA10110217	Haemophilus parainfluenzae
GCA_916438425.1	CAKAHC000000000	SAMEA10110224	Hoylesella shahii
GCA_916444975.1	CAKAIS000000000	SAMEA10110202	Lachnoanaerobaculum umeaense
GCA_916438795.1	CAKAGZ000000000	SAMEA10110213	Megasphaera micronuciformis
GCA_916439235.1	CAKAHG000000000	SAMEA10110145	Mogibacterium diversum
GCA_916438255.1	CAKAEN000000000	SAMEA10110206	Neisseria flavescens
GCA_916438325.1	CAKAGC000000000	SAMEA10110184	Oribacterium parvum
GCA_916438895.1	CAKAGM000000000	SAMEA10110172	Peptostreptococcus stomatis
GCA_916439215.1	CAKAHL000000000	SAMEA10110176	Prevotella aurantiaca
GCA_916438675.1	CAKAFN000000000	SAMEA10110157	Prevotella jejuni
GCA_916438435.1	CAKAHD000000000	SAMEA10110203	Prevotella melaninogenica
GCA_916439505.1	CAKAID000000000	SAMEA10110182	Prevotella nigrescens
GCA_916444665.1	CAKAIP000000000	SAMEA10110241	Prevotella pallens
GCA_916439555.1	CAKAIF000000000	SAMEA10110229	Rothia aeria
GCA_916439245.1	CAKAHX000000000	SAMEA10110171	Rothia aeria
GCA_916438935.1	CAKAGF000000000	SAMEA10110187	Rothia dentocariosa
GCA_916439205.1	CAKAHH000000000	SAMEA10110245	Stomatobaculum longum
GCA_916438405.1	CAKAFB000000000	SAMEA10110211	Streptococcus cristatus
GCA_916439275.1	CAKAHU000000000	SAMEA10110190	Streptococcus gordonii
GCA_916438915.1	CAKAGJ000000000	SAMEA10110222	Streptococcus oralis
GCA_916439005.1	CAKAGB000000000	SAMEA10110239	Streptococcus salivarius
GCA_916439355.1	CAKAIA000000000	SAMEA10110225	Veillonella atypica
GCA_916439145.1	CAKAHP000000000	SAMEA10110233	Veillonella tobetsuensis
GCA_916438985.1	CAKAGO000000000	SAMEA10110198	[Eubacterium] brachy
GCA_916438705.1	CAKAFL000000000	SAMEA10110231	[Eubacterium] sulci
GCA_015471965.1	BNJU00000000	SAMD00202456	human saliva metagenome
GCA_015473165.1	BNJT00000000	SAMD00202455	human saliva metagenome
GCA_015473145.1	BNJS00000000	SAMD00202454	human saliva metagenome
GCA_015473185.1	BNJV00000000	SAMD00202457	human saliva metagenome
GCA_916438485.1	CAKAES000000000	SAMEA10110170	uncultured Abiotrophia sp.
GCA_916438335.1	CAKAFS000000000	SAMEA10110140	uncultured Actinomyces sp.
GCA_916438665.1	CAKAFD000000000	SAMEA10110148	uncultured Actinomyces sp.
GCA_916439185.1	CAKAHI000000000	SAMEA10110186	uncultured Actinomyces sp.
GCA_916439125.1	CAKAHQ000000000	SAMEA10110242	uncultured Actinomyces sp.
GCA_916439085.1	CAKAIE000000000	SAMEA10110248	uncultured Actinomyces sp.
GCA_916439055.1	CAKAGP000000000	SAMEA10110226	uncultured Actinomyces sp.
GCA_916439255.1	CAKAHW000000000	SAMEA10110201	uncultured Actinomyces sp.
GCA_916439175.1	CAKAHJ000000000	SAMEA10110194	uncultured Actinomyces sp.
GCA_916438945.1	CAKAGS000000000	SAMEA10110237	uncultured Actinomycetaceae bacterium
GCA_916438555.1	CAKAEV000000000	SAMEA10110216	uncultured Alloprevotella sp.
GCA_916444965.1	CAKAIR000000000	SAMEA10110232	uncultured Alloprevotella sp.
GCA_916438955.1	CAKAGL000000000	SAMEA10110191	uncultured Atopobium sp.
GCA_916438965.1	CAKAGI000000000	SAMEA10110142	uncultured Atopobium sp.
GCA_916438885.1	CAKAGG000000000	SAMEA10110214	uncultured Atopobium sp.
GCA_916439775.1	CAKAII000000000	SAMEA10110236	uncultured Bergeyella sp.
GCA_916438925.1	CAKAGH000000000	SAMEA10110219	uncultured Butyrivibrio sp.
GCA_916438515.1	CAKAET000000000	SAMEA10110168	uncultured Campylobacter sp.
GCA_916438855.1	CAKAFW000000000	SAMEA10110218	uncultured Candidatus Saccharibacteria bacterium
GCA_916439515.1	CAKAIC000000000	SAMEA10110227	uncultured Candidatus Saccharibacteria bacterium
GCA_916439725.1	CAKAIH000000000	SAMEA10110166	uncultured Candidatus Saccharibacteria bacterium
GCA_916438525.1	CAKAER000000000	SAMEA10110208	uncultured Catonella sp.
GCA_916439065.1	CAKAGD000000000	SAMEA10110149	uncultured Catonella sp.
GCA_916438995.1	CAKAGA000000000	SAMEA10110188	uncultured Catonella sp.
GCA_916439325.1	CAKAHZ000000000	SAMEA10110179	uncultured Corynebacterium sp.
GCA_916439345.1	CAKAHT000000000	SAMEA10110163	uncultured Eubacteriales bacterium
GCA_916438765.1	CAKAHB000000000	SAMEA10110228	uncultured Granulicatella sp.
GCA_916438755.1	CAKAFP000000000	SAMEA10110207	uncultured Granulicatella sp.
GCA_916438835.1	CAKAFT000000000	SAMEA10110249	uncultured Johnsonella sp.
GCA_916438825.1	CAKAGY000000000	SAMEA10110230	uncultured Lachnoanaerobaculum sp.
GCA_916439285.1	CAKAIM000000000	SAMEA10110164	uncultured Lachnoanaerobaculum sp.
GCA_916439335.1	CAKAHV000000000	SAMEA10110204	uncultured Lachnoanaerobaculum sp.
GCA_916439265.1	CAKAHY000000000	SAMEA10110156	uncultured Lachnoanaerobaculum sp.
GCA_916439015.1	CAKAFZ000000000	SAMEA10110243	uncultured Lachnoanaerobaculum sp.
GCA_916439105.1	CAKAHN000000000	SAMEA10110169	uncultured Lachnoanaerobaculum sp.
GCA_916438585.1	CAKAFQ000000000	SAMEA10110240	uncultured Leptotrichia sp.
GCA_916438565.1	CAKAEU000000000	SAMEA10110155	uncultured Leptotrichia sp.
GCA_916439075.1	CAKAIB000000000	SAMEA10110244	uncultured Leptotrichia sp.
GCA_916439735.1	CAKAIG000000000	SAMEA10110151	uncultured Mitsuokella sp.
GCA_916438445.1	CAKAGR000000000	SAMEA10110162	uncultured Mobiluncus sp.
GCA_916438865.1	CAKAFX000000000	SAMEA10110199	uncultured Mogibacterium sp.
GCA_916438645.1	CAKAFC000000000	SAMEA10110173	uncultured Mogibacterium sp.
GCA_916438715.1	CAKAFK000000000	SAMEA10110152	uncultured Neisseria sp.
GCA_916438535.1	CAKAEP000000000	SAMEA10110234	uncultured Neisseria sp.
GCA_916438735.1	CAKAGK000000000	SAMEA10110147	uncultured Oribacterium sp.
GCA_916438775.1	CAKAGX000000000	SAMEA10110154	uncultured Oribacterium sp.
GCA_916439225.1	CAKAHF000000000	SAMEA10110159	uncultured Oribacterium sp.
GCA_916439195.1	CAKAHS000000000	SAMEA10110161	uncultured Pasteurellaceae bacterium
GCA_916439165.1	CAKAHK000000000	SAMEA10110220	uncultured Porphyromonas sp.
GCA_916444955.1	CAKAIQ000000000	SAMEA10110160	uncultured Porphyromonas sp.
GCA_916438695.1	CAKAFM000000000	SAMEA10110180	uncultured Porphyromonas sp.
GCA_916440255.1	CAKAIJ000000000	SAMEA10110192	uncultured Prevotella sp.
GCA_916439115.1	CAKAHO000000000	SAMEA10110195	uncultured Prevotella sp.
GCA_916439155.1	CAKAHM000000000	SAMEA10110197	uncultured Prevotella sp.
GCA_916438725.1	CAKAFV000000000	SAMEA10110174	uncultured Prevotellaceae bacterium
GCA_916438655.1	CAKAFO000000000	SAMEA10110144	uncultured Prevotellaceae bacterium
GCA_916438505.1	CAKAFA000000000	SAMEA10110175	uncultured Prevotellaceae bacterium
GCA_916438595.1	CAKAFG000000000	SAMEA10110247	uncultured Prevotellaceae bacterium
GCA_916438195.1	CAKAEQ000000000	SAMEA10110143	uncultured Prevotellaceae bacterium
GCA_916438355.1	CAKAEO000000000	SAMEA10110177	uncultured Rothia sp.
GCA_916440305.1	CAKAIK000000000	SAMEA10110183	uncultured Rothia sp.
GCA_916438365.1	CAKAEY000000000	SAMEA10110196	uncultured Sanguibacter sp.
GCA_916438625.1	CAKAFE000000000	SAMEA10110181	uncultured Selenomonas sp.
GCA_916438875.1	CAKAFY000000000	SAMEA10110141	uncultured Solobacterium sp.
GCA_916438905.1	CAKAGT000000000	SAMEA10110146	uncultured Stomatobaculum sp.
GCA_916439095.1	CAKAGU000000000	SAMEA10110212	uncultured Stomatobaculum sp.
GCA_916439135.1	CAKAHR000000000	SAMEA10110178	uncultured Streptococcus sp.
GCA_916439305.1	CAKAIO000000000	SAMEA10110215	uncultured Streptococcus sp.
GCA_916439315.1	CAKAIN000000000	SAMEA10110223	uncultured Streptococcus sp.
GCA_916438815.1	CAKAHA000000000	SAMEA10110235	uncultured Streptococcus sp.
GCA_916438415.1	CAKAHE000000000	SAMEA10110246	uncultured Tannerella sp.
GCA_916439295.1	CAKAIL000000000	SAMEA10110238	uncultured Tannerella sp.
GCA_916438745.1	CAKAGN000000000	SAMEA10110221	uncultured Veillonella sp.
GCA_916438785.1	CAKAGV000000000	SAMEA10110189	uncultured Veillonella sp.
GCA_916438495.1	CAKAEX000000000	SAMEA10110185	uncultured bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	394
Data volume, Tbytes	0.24

BioProject

Result Filters

Display Settings:

Send to:

Links from Nucleotide

human saliva metagenome

Shotgun metagenome sequencing of human saliva using HiSeq

Supplemental Content

Related information

Recent activity